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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 667 |
| Acc36I | ACCTGC | 1 cut(s) | 176 |
| AccB1I | GGYRCC | 2 cut(s) | 91, 359 |
| AccI | GTMKAC | 1 cut(s) | 507 |
| AciI | CCGC | 2 cut(s) | 95, 638 |
| AclWI | GGATC | 2 cut(s) | 512, 525 |
| AcoI | YGGCCR | 1 cut(s) | 430 |
| AcuI | CTGAAG | 1 cut(s) | 333 |
| AfaI | GTAC | 1 cut(s) | 642 |
| AfeI | AGCGCT | 1 cut(s) | 389 |
| AgsI | TTSAA | 2 cut(s) | 307, 526 |
| AjiI | CACGTC | 1 cut(s) | 197 |
| Alw26I | GTCTC | 1 cut(s) | 526 |
| AlwI | GGATC | 2 cut(s) | 512, 525 |
| Aor51HI | AGCGCT | 1 cut(s) | 389 |
| AoxI | GGCC | 2 cut(s) | 132, 430 |
| ApeKI | GCWGC | 1 cut(s) | 11 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 489, 521 |
| AseI | ATTAAT | 1 cut(s) | 231 |
| AspLEI | GCGC | 1 cut(s) | 390 |
| AspS9I | GGNCC | 1 cut(s) | 132 |
| BalI | TGGCCA | 1 cut(s) | 432 |
| BamHI | GGATCC | 1 cut(s) | 517 |
| BanI | GGYRCC | 2 cut(s) | 91, 359 |
| BauI | CACGAG | 1 cut(s) | 393 |
| BbsI | GAAGAC | 2 cut(s) | 164, 504 |
| BbvI | GCAGC | 1 cut(s) | 23 |
| BccI | CCATC | 1 cut(s) | 322 |
| BceAI | ACGGC | 1 cut(s) | 586 |
| BcoDI | GTCTC | 1 cut(s) | 526 |
| BfaI | CTAG | 1 cut(s) | 74 |
| BfoI | RGCGCY | 1 cut(s) | 391 |
| BfuAI | ACCTGC | 1 cut(s) | 176 |
| BglII | AGATCT | 1 cut(s) | 70 |
| BisI | GCNGC | 1 cut(s) | 12 |
| BlsI | GCNGC | 1 cut(s) | 13 |
| BmgBI | CACGTC | 1 cut(s) | 197 |
| BmgT120I | GGNCC | 1 cut(s) | 132 |
| BmiI | GGNNCC | 3 cut(s) | 93, 361, 519 |
| BmsI | GCATC | 8 cut(s) | 92, 116, 209, 276, 285, 309, 462, 582 |
| BpiI | GAAGAC | 2 cut(s) | 164, 504 |
| BpmI | CTGGAG | 1 cut(s) | 344 |
| BpuEI | CTTGAG | 1 cut(s) | 576 |
| Bse3DI | GCAATG | 1 cut(s) | 21 |
| BseGI | GGATG | 3 cut(s) | 107, 417, 477 |
| BseMI | GCAATG | 1 cut(s) | 21 |
| BseRI | GAGGAG | 1 cut(s) | 544 |
| BseXI | GCAGC | 1 cut(s) | 23 |
| BsgI | GTGCAG | 1 cut(s) | 154 |
| BshFI | GGCC | 2 cut(s) | 134, 432 |
| BshNI | GGYRCC | 2 cut(s) | 91, 359 |
| BsmAI | GTCTC | 1 cut(s) | 526 |
| BsnI | GGCC | 2 cut(s) | 134, 432 |
| Bsp143I | GATC | 2 cut(s) | 70, 517 |
| BspACI | CCGC | 2 cut(s) | 95, 638 |
| BspANI | GGCC | 2 cut(s) | 134, 432 |
| BspLI | GGNNCC | 3 cut(s) | 93, 361, 519 |
| BspMI | ACCTGC | 1 cut(s) | 176 |
| BspPI | GGATC | 2 cut(s) | 512, 525 |
| BspT107I | GGYRCC | 2 cut(s) | 91, 359 |
| BsrDI | GCAATG | 1 cut(s) | 21 |
| BssMI | GATC | 2 cut(s) | 70, 517 |
| BssSI | CACGAG | 1 cut(s) | 393 |
| Bst2BI | CACGAG | 1 cut(s) | 393 |
| Bst6I | CTCTTC | 2 cut(s) | 29, 521 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 273 |
| BstF5I | GGATG | 3 cut(s) | 107, 417, 477 |
| BstH2I | RGCGCY | 1 cut(s) | 391 |
| BstHHI | GCGC | 1 cut(s) | 390 |
| BstKTI | GATC | 2 cut(s) | 73, 520 |
| BstMAI | GTCTC | 1 cut(s) | 526 |
| BstMBI | GATC | 2 cut(s) | 70, 517 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 89, 140, 273 |
| BstV1I | GCAGC | 1 cut(s) | 23 |
| BstV2I | GAAGAC | 2 cut(s) | 164, 504 |
| BstX2I | RGATCY | 2 cut(s) | 70, 517 |
| BstYI | RGATCY | 2 cut(s) | 70, 517 |
| BsuRI | GGCC | 2 cut(s) | 134, 432 |
| BtrI | CACGTC | 1 cut(s) | 197 |
| BtsCI | GGATG | 3 cut(s) | 107, 417, 477 |
| BtsIMutI | CAGTG | 1 cut(s) | 143 |
| BveI | ACCTGC | 1 cut(s) | 176 |
| CfoI | GCGC | 1 cut(s) | 390 |
| Cfr13I | GGNCC | 1 cut(s) | 132 |
| Csp6I | GTAC | 1 cut(s) | 641 |
| CviAII | CATG | 4 cut(s) | 56, 79, 247, 514 |
| CviJI | RGCY | 5 cut(s) | 134, 404, 432, 490, 609 |
| CviKI_1 | RGCY | 5 cut(s) | 134, 404, 432, 490, 609 |
| CviQI | GTAC | 1 cut(s) | 641 |
| DpnI | GATC | 2 cut(s) | 72, 519 |
| DpnII | GATC | 2 cut(s) | 70, 517 |
| EaeI | YGGCCR | 1 cut(s) | 430 |
| Eam1104I | CTCTTC | 2 cut(s) | 29, 521 |
| EarI | CTCTTC | 2 cut(s) | 29, 521 |
| Eco47III | AGCGCT | 1 cut(s) | 389 |
| Eco57I | CTGAAG | 1 cut(s) | 333 |
| EcoT22I | ATGCAT | 2 cut(s) | 128, 278 |
| FaeI | CATG | 4 cut(s) | 59, 82, 250, 517 |
| FatI | CATG | 4 cut(s) | 55, 78, 246, 513 |
| FauNDI | CATATG | 2 cut(s) | 128, 272 |
| FblI | GTMKAC | 1 cut(s) | 507 |
| Fnu4HI | GCNGC | 1 cut(s) | 12 |
| FokI | GGATG | 3 cut(s) | 94, 424, 484 |
| Fsp4HI | GCNGC | 1 cut(s) | 12 |
| FspBI | CTAG | 1 cut(s) | 74 |
| GlaI | GCGC | 1 cut(s) | 389 |
| GluI | GCNGC | 1 cut(s) | 12 |
| GsuI | CTGGAG | 1 cut(s) | 344 |
| HaeII | RGCGCY | 1 cut(s) | 391 |
| HaeIII | GGCC | 2 cut(s) | 134, 432 |
| HhaI | GCGC | 1 cut(s) | 390 |
| Hin1II | CATG | 4 cut(s) | 59, 82, 250, 517 |
| Hin6I | GCGC | 1 cut(s) | 388 |
| HinP1I | GCGC | 1 cut(s) | 388 |
| HinfI | GANTC | 2 cut(s) | 100, 534 |
| Hpy166II | GTNNAC | 2 cut(s) | 508, 565 |
| Hpy188I | TCNGA | 2 cut(s) | 194, 352 |
| Hpy188III | TCNNGA | 2 cut(s) | 31, 74 |
| Hpy8I | GTNNAC | 2 cut(s) | 508, 565 |
| HpyAV | CCTTC | 1 cut(s) | 244 |
| HpyCH4IV | ACGT | 1 cut(s) | 196 |
| HpyCH4V | TGCA | 6 cut(s) | 107, 126, 171, 200, 276, 398 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 89, 140, 273 |
| HpySE526I | ACGT | 1 cut(s) | 196 |
| Hsp92II | CATG | 4 cut(s) | 59, 82, 250, 517 |
| HspAI | GCGC | 1 cut(s) | 388 |
| Kzo9I | GATC | 2 cut(s) | 70, 517 |
| LmnI | GCTCC | 1 cut(s) | 264 |
| Lsp1109I | GCAGC | 1 cut(s) | 23 |
| LweI | GCATC | 8 cut(s) | 92, 116, 209, 276, 285, 309, 462, 582 |
| MaeI | CTAG | 1 cut(s) | 74 |
| MaeII | ACGT | 1 cut(s) | 196 |
| MaeIII | GTNAC | 2 cut(s) | 241, 287 |
| MalI | GATC | 2 cut(s) | 72, 519 |
| MboI | GATC | 2 cut(s) | 70, 517 |
| MboII | GAAGA | 7 cut(s) | 46, 62, 80, 169, 509, 538, 565 |
| MfeI | CAATTG | 1 cut(s) | 381 |
| MflI | RGATCY | 2 cut(s) | 70, 517 |
| MlsI | TGGCCA | 1 cut(s) | 432 |
| MluCI | AATT | 3 cut(s) | 162, 381, 631 |
| MluNI | TGGCCA | 1 cut(s) | 432 |
| MlyI | GAGTC | 1 cut(s) | 528 |
| MnlI | CCTC | 2 cut(s) | 58, 522 |
| Mox20I | TGGCCA | 1 cut(s) | 432 |
| Mph1103I | ATGCAT | 2 cut(s) | 128, 278 |
| MscI | TGGCCA | 1 cut(s) | 432 |
| MseI | TTAA | 2 cut(s) | 114, 231 |
| MslI | CAYNNNNRTG | 2 cut(s) | 60, 281 |
| Msp20I | TGGCCA | 1 cut(s) | 432 |
| MunI | CAATTG | 1 cut(s) | 381 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 89, 140, 273 |
| NdeI | CATATG | 2 cut(s) | 128, 272 |
| NdeII | GATC | 2 cut(s) | 70, 517 |
| NlaIII | CATG | 4 cut(s) | 59, 82, 250, 517 |
| NlaIV | GGNNCC | 3 cut(s) | 93, 361, 519 |
| NsiI | ATGCAT | 2 cut(s) | 128, 278 |
| PfeI | GAWTC | 1 cut(s) | 100 |
| PflFI | GACNNNGTC | 1 cut(s) | 503 |
| PkrI | GCNGC | 1 cut(s) | 13 |
| PleI | GAGTC | 1 cut(s) | 528 |
| PpsI | GAGTC | 1 cut(s) | 528 |
| PshBI | ATTAAT | 1 cut(s) | 231 |
| PsiI | TTATAA | 1 cut(s) | 667 |
| PspN4I | GGNNCC | 3 cut(s) | 93, 361, 519 |
| PspPI | GGNCC | 1 cut(s) | 132 |
| PsuI | RGATCY | 2 cut(s) | 70, 517 |
| PsyI | GACNNNGTC | 1 cut(s) | 503 |
| RsaI | GTAC | 1 cut(s) | 642 |
| RsaNI | GTAC | 1 cut(s) | 641 |
| RseI | CAYNNNNRTG | 2 cut(s) | 60, 281 |
| SaqAI | TTAA | 2 cut(s) | 114, 231 |
| SatI | GCNGC | 1 cut(s) | 12 |
| Sau3AI | GATC | 2 cut(s) | 70, 517 |
| Sau96I | GGNCC | 1 cut(s) | 132 |
| SchI | GAGTC | 1 cut(s) | 528 |
| SetI | ASST | 4 cut(s) | 170, 199, 294, 658 |
| SfaNI | GCATC | 8 cut(s) | 92, 116, 209, 276, 285, 309, 462, 582 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 60, 281 |
| SmlI | CTYRAG | 1 cut(s) | 591 |
| SmoI | CTYRAG | 1 cut(s) | 591 |
| Sse9I | AATT | 3 cut(s) | 162, 381, 631 |
| SsiI | CCGC | 2 cut(s) | 95, 638 |
| SspMI | CTAG | 1 cut(s) | 74 |
| TaiI | ACGT | 1 cut(s) | 199 |
| TasI | AATT | 3 cut(s) | 162, 381, 631 |
| TfiI | GAWTC | 1 cut(s) | 100 |
| Tru1I | TTAA | 2 cut(s) | 114, 231 |
| Tru9I | TTAA | 2 cut(s) | 114, 231 |
| TscAI | CASTG | 1 cut(s) | 150 |
| TseI | GCWGC | 1 cut(s) | 11 |
| TspDTI | ATGAA | 6 cut(s) | 195, 263, 356, 428, 502, 665 |
| TspRI | CASTG | 1 cut(s) | 150 |
| Tth111I | GACNNNGTC | 1 cut(s) | 503 |
| VspI | ATTAAT | 1 cut(s) | 231 |
| XbaI | TCTAGA | 1 cut(s) | 73 |
| XmiI | GTMKAC | 1 cut(s) | 507 |
| XspI | CTAG | 1 cut(s) | 74 |
| Zsp2I | ATGCAT | 2 cut(s) | 128, 278 |