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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 391 |
| AccB1I | GGYRCC | 1 cut(s) | 1252 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1262 |
| AccI | GTMKAC | 2 cut(s) | 14, 1503 |
| AciI | CCGC | 2 cut(s) | 466, 1073 |
| AclWI | GGATC | 3 cut(s) | 583, 617, 630 |
| AcoI | YGGCCR | 1 cut(s) | 1430 |
| AcuI | CTGAAG | 1 cut(s) | 461 |
| AcvI | CACGTG | 1 cut(s) | 1088 |
| AdeI | CACNNNGTG | 1 cut(s) | 1463 |
| AfaI | GTAC | 4 cut(s) | 583, 1197, 1245, 1260 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1213, 1262, 1460 |
| AflIII | ACRYGT | 1 cut(s) | 1085 |
| AgsI | TTSAA | 6 cut(s) | 116, 433, 784, 815, 1163, 1620 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 405, 437, 1112, 1144 |
| AleI | CACNNNNGTG | 1 cut(s) | 1518 |
| AluBI | AGCT | 8 cut(s) | 47, 212, 341, 875, 932, 985, 1027, 1553 |
| AluI | AGCT | 8 cut(s) | 47, 212, 341, 875, 932, 985, 1027, 1553 |
| Alw21I | GWGCWC | 1 cut(s) | 86 |
| Alw26I | GTCTC | 5 cut(s) | 119, 270, 306, 1280, 1355 |
| AlwI | GGATC | 3 cut(s) | 583, 617, 630 |
| AoxI | GGCC | 1 cut(s) | 1430 |
| ApeKI | GCWGC | 8 cut(s) | 143, 176, 212, 284, 542, 985, 1070, 1177 |
| AspS9I | GGNCC | 1 cut(s) | 1606 |
| AsuHPI | GGTGA | 4 cut(s) | 1120, 1277, 1295, 1486 |
| AvaII | GGWCC | 1 cut(s) | 1606 |
| BamHI | GGATCC | 1 cut(s) | 622 |
| BanI | GGYRCC | 1 cut(s) | 1252 |
| BbrPI | CACGTG | 1 cut(s) | 1088 |
| Bbv12I | GWGCWC | 1 cut(s) | 86 |
| BbvCI | CCTCAGC | 1 cut(s) | 921 |
| BbvI | GCAGC | 8 cut(s) | 130, 188, 199, 271, 529, 972, 1057, 1189 |
| BccI | CCATC | 1 cut(s) | 968 |
| BceAI | ACGGC | 1 cut(s) | 812 |
| BcoDI | GTCTC | 5 cut(s) | 119, 270, 306, 1280, 1355 |
| BfaI | CTAG | 4 cut(s) | 378, 825, 959, 1301 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 796 |
| BisI | GCNGC | 9 cut(s) | 144, 177, 213, 285, 466, 543, 986, 1071, 1178 |
| BlsI | GCNGC | 9 cut(s) | 145, 178, 214, 286, 467, 544, 987, 1072, 1179 |
| Bme18I | GGWCC | 1 cut(s) | 1606 |
| BmgT120I | GGNCC | 1 cut(s) | 1606 |
| BmiI | GGNNCC | 4 cut(s) | 624, 1254, 1439, 1608 |
| BmrI | ACTGGG | 1 cut(s) | 1176 |
| BmsI | GCATC | 3 cut(s) | 945, 1161, 1396 |
| BmuI | ACTGGG | 1 cut(s) | 1176 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1421 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1036, 1068 |
| BpmI | CTGGAG | 1 cut(s) | 1268 |
| Bpu10I | CCTNAGC | 1 cut(s) | 921 |
| BpuEI | CTTGAG | 1 cut(s) | 1379 |
| BsaAI | YACGTR | 2 cut(s) | 581, 1088 |
| BsaBI | GATNNNNATC | 1 cut(s) | 593 |
| BsaI | GGTCTC | 2 cut(s) | 1280, 1355 |
| BsaJI | CCNNGG | 2 cut(s) | 1057, 1433 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1213, 1262, 1460 |
| Bse1I | ACTGG | 3 cut(s) | 1182, 1251, 1256 |
| Bse3DI | GCAATG | 1 cut(s) | 75 |
| Bse8I | GATNNNNATC | 1 cut(s) | 593 |
| BseDI | CCNNGG | 2 cut(s) | 1057, 1433 |
| BseGI | GGATG | 2 cut(s) | 409, 1411 |
| BseJI | GATNNNNATC | 1 cut(s) | 593 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1213, 1262, 1460 |
| BseMI | GCAATG | 1 cut(s) | 75 |
| BseMII | CTCAG | 4 cut(s) | 114, 281, 912, 933 |
| BseNI | ACTGG | 3 cut(s) | 1182, 1251, 1256 |
| BseRI | GAGGAG | 6 cut(s) | 866, 869, 911, 914, 938, 1235 |
| BseXI | GCAGC | 8 cut(s) | 130, 188, 199, 271, 529, 972, 1057, 1189 |
| BsgI | GTGCAG | 2 cut(s) | 1196, 1440 |
| BshFI | GGCC | 1 cut(s) | 1432 |
| BshNI | GGYRCC | 1 cut(s) | 1252 |
| BsiHKAI | GWGCWC | 1 cut(s) | 86 |
| BslFI | GGGAC | 3 cut(s) | 982, 1429, 1592 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1213, 1262, 1460 |
| BsmAI | GTCTC | 5 cut(s) | 119, 270, 306, 1280, 1355 |
| BsmFI | GGGAC | 3 cut(s) | 982, 1429, 1592 |
| BsnI | GGCC | 1 cut(s) | 1432 |
| Bso31I | GGTCTC | 2 cut(s) | 1280, 1355 |
| Bsp1286I | GDGCHC | 1 cut(s) | 86 |
| Bsp143I | GATC | 3 cut(s) | 20, 588, 622 |
| BspACI | CCGC | 2 cut(s) | 466, 1073 |
| BspANI | GGCC | 1 cut(s) | 1432 |
| BspCNI | CTCAG | 4 cut(s) | 115, 280, 913, 934 |
| BspLI | GGNNCC | 4 cut(s) | 624, 1254, 1439, 1608 |
| BspPI | GGATC | 3 cut(s) | 583, 617, 630 |
| BspT107I | GGYRCC | 1 cut(s) | 1252 |
| BspTNI | GGTCTC | 2 cut(s) | 1280, 1355 |
| BsrDI | GCAATG | 1 cut(s) | 75 |
| BsrI | ACTGG | 3 cut(s) | 1182, 1251, 1256 |
| BssECI | CCNNGG | 2 cut(s) | 1057, 1433 |
| BssMI | GATC | 3 cut(s) | 20, 588, 622 |
| BssT1I | CCWWGG | 1 cut(s) | 1057 |
| Bst4CI | ACNGT | 6 cut(s) | 325, 505, 1200, 1315, 1342, 1492 |
| Bst6I | CTCTTC | 3 cut(s) | 1158, 1212, 1263 |
| BstBAI | YACGTR | 2 cut(s) | 581, 1088 |
| BstC8I | GCNNGC | 1 cut(s) | 1555 |
| BstDEI | CTNAG | 9 cut(s) | 50, 123, 186, 195, 267, 921, 942, 1476, 1558 |
| BstEII | GGTNACC | 2 cut(s) | 454, 1492 |
| BstF5I | GGATG | 2 cut(s) | 409, 1411 |
| BstKTI | GATC | 3 cut(s) | 23, 591, 625 |
| BstMAI | GTCTC | 5 cut(s) | 119, 270, 306, 1280, 1355 |
| BstMBI | GATC | 3 cut(s) | 20, 588, 622 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 680, 796, 1079 |
| BstNSI | RCATGY | 1 cut(s) | 992 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1421 |
| BstPI | GGTNACC | 2 cut(s) | 454, 1492 |
| BstV1I | GCAGC | 8 cut(s) | 130, 188, 199, 271, 529, 972, 1057, 1189 |
| BstX2I | RGATCY | 2 cut(s) | 588, 622 |
| BstYI | RGATCY | 2 cut(s) | 588, 622 |
| BsuRI | GGCC | 1 cut(s) | 1432 |
| BtsCI | GGATG | 2 cut(s) | 409, 1411 |
| BtsIMutI | CAGTG | 2 cut(s) | 501, 1189 |
| Cac8I | GCNNGC | 1 cut(s) | 1555 |
| Cfr13I | GGNCC | 1 cut(s) | 1606 |
| Csp6I | GTAC | 4 cut(s) | 582, 1196, 1244, 1259 |
| CviAII | CATG | 8 cut(s) | 313, 460, 891, 989, 1262, 1382, 1442, 1460 |
| CviQI | GTAC | 4 cut(s) | 582, 1196, 1244, 1259 |
| DdeI | CTNAG | 9 cut(s) | 50, 123, 186, 195, 267, 921, 942, 1476, 1558 |
| DpnI | GATC | 3 cut(s) | 22, 590, 624 |
| DpnII | GATC | 3 cut(s) | 20, 588, 622 |
| DraIII | CACNNNGTG | 1 cut(s) | 1463 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 391 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 391 |
| EaeI | YGGCCR | 1 cut(s) | 1430 |
| Eam1104I | CTCTTC | 3 cut(s) | 1158, 1212, 1263 |
| EarI | CTCTTC | 3 cut(s) | 1158, 1212, 1263 |
| Eco130I | CCWWGG | 1 cut(s) | 1057 |
| Eco31I | GGTCTC | 2 cut(s) | 1280, 1355 |
| Eco47I | GGWCC | 1 cut(s) | 1606 |
| Eco57I | CTGAAG | 1 cut(s) | 461 |
| Eco72I | CACGTG | 1 cut(s) | 1088 |
| Eco91I | GGTNACC | 2 cut(s) | 454, 1492 |
| EcoO65I | GGTNACC | 2 cut(s) | 454, 1492 |
| EcoT14I | CCWWGG | 1 cut(s) | 1057 |
| ErhI | CCWWGG | 1 cut(s) | 1057 |
| FaeI | CATG | 8 cut(s) | 316, 463, 894, 992, 1265, 1385, 1445, 1463 |
| FaqI | GGGAC | 3 cut(s) | 982, 1429, 1592 |
| FatI | CATG | 8 cut(s) | 312, 459, 890, 988, 1261, 1381, 1441, 1459 |
| FauNDI | CATATG | 1 cut(s) | 714 |
| FblI | GTMKAC | 2 cut(s) | 14, 1503 |
| Fnu4HI | GCNGC | 9 cut(s) | 144, 177, 213, 285, 466, 543, 986, 1071, 1178 |
| FokI | GGATG | 2 cut(s) | 416, 1418 |
| Fsp4HI | GCNGC | 9 cut(s) | 144, 177, 213, 285, 466, 543, 986, 1071, 1178 |
| FspBI | CTAG | 4 cut(s) | 378, 825, 959, 1301 |
| GluI | GCNGC | 9 cut(s) | 144, 177, 213, 285, 466, 543, 986, 1071, 1178 |
| GsuI | CTGGAG | 1 cut(s) | 1268 |
| HaeIII | GGCC | 1 cut(s) | 1432 |
| Hin1II | CATG | 8 cut(s) | 316, 463, 894, 992, 1265, 1385, 1445, 1463 |
| HincII | GTYRAC | 2 cut(s) | 360, 1504 |
| HindII | GTYRAC | 2 cut(s) | 360, 1504 |
| HinfI | GANTC | 2 cut(s) | 650, 995 |
| HphI | GGTGA | 4 cut(s) | 1120, 1277, 1295, 1486 |
| Hpy166II | GTNNAC | 4 cut(s) | 15, 360, 1504, 1630 |
| Hpy188I | TCNGA | 4 cut(s) | 234, 270, 306, 397 |
| Hpy188III | TCNNGA | 2 cut(s) | 626, 1035 |
| Hpy8I | GTNNAC | 4 cut(s) | 15, 360, 1504, 1630 |
| HpyAV | CCTTC | 7 cut(s) | 110, 853, 961, 1072, 1105, 1390, 1465 |
| HpyCH4III | ACNGT | 6 cut(s) | 325, 505, 1200, 1315, 1342, 1492 |
| HpyCH4IV | ACGT | 3 cut(s) | 580, 667, 1087 |
| HpyCH4V | TGCA | 9 cut(s) | 35, 110, 545, 556, 683, 988, 1177, 1457, 1523 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 680, 796, 1079 |
| HpyF3I | CTNAG | 9 cut(s) | 50, 123, 186, 195, 267, 921, 942, 1476, 1558 |
| HpySE526I | ACGT | 3 cut(s) | 580, 667, 1087 |
| Hsp92II | CATG | 8 cut(s) | 316, 463, 894, 992, 1265, 1385, 1445, 1463 |
| Kzo9I | GATC | 3 cut(s) | 20, 588, 622 |
| Lsp1109I | GCAGC | 8 cut(s) | 130, 188, 199, 271, 529, 972, 1057, 1189 |
| LweI | GCATC | 3 cut(s) | 945, 1161, 1396 |
| MaeI | CTAG | 4 cut(s) | 378, 825, 959, 1301 |
| MaeII | ACGT | 3 cut(s) | 580, 667, 1087 |
| MaeIII | GTNAC | 4 cut(s) | 454, 717, 1009, 1492 |
| MalI | GATC | 3 cut(s) | 22, 590, 624 |
| MboI | GATC | 3 cut(s) | 20, 588, 622 |
| MboII | GAAGA | 8 cut(s) | 853, 958, 991, 1175, 1229, 1244, 1280, 1480 |
| MfeI | CAATTG | 1 cut(s) | 111 |
| MflI | RGATCY | 2 cut(s) | 588, 622 |
| MhlI | GDGCHC | 1 cut(s) | 86 |
| MluCI | AATT | 7 cut(s) | 102, 111, 420, 678, 1170, 1277, 1615 |
| MlyI | GAGTC | 1 cut(s) | 1004 |
| MmeI | TCCRAC | 2 cut(s) | 357, 1565 |
| MseI | TTAA | 7 cut(s) | 57, 206, 327, 512, 1020, 1136, 1202 |
| MslI | CAYNNNNRTG | 2 cut(s) | 569, 1518 |
| MspA1I | CMGCKG | 1 cut(s) | 212 |
| MunI | CAATTG | 1 cut(s) | 111 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 680, 796, 1079 |
| NdeI | CATATG | 1 cut(s) | 714 |
| NdeII | GATC | 3 cut(s) | 20, 588, 622 |
| NlaIII | CATG | 8 cut(s) | 316, 463, 894, 992, 1265, 1385, 1445, 1463 |
| NlaIV | GGNNCC | 4 cut(s) | 624, 1254, 1439, 1608 |
| NmeAIII | GCCGAG | 1 cut(s) | 1458 |
| NmuCI | GTSAC | 3 cut(s) | 717, 1009, 1492 |
| NspI | RCATGY | 1 cut(s) | 992 |
| OliI | CACNNNNGTG | 1 cut(s) | 1518 |
| PfeI | GAWTC | 1 cut(s) | 650 |
| PflFI | GACNNNGTC | 2 cut(s) | 355, 1490 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1262 |
| PkrI | GCNGC | 9 cut(s) | 145, 178, 214, 286, 467, 544, 987, 1072, 1179 |
| PleI | GAGTC | 1 cut(s) | 1003 |
| PmaCI | CACGTG | 1 cut(s) | 1088 |
| PmlI | CACGTG | 1 cut(s) | 1088 |
| PpsI | GAGTC | 1 cut(s) | 1003 |
| Ppu21I | YACGTR | 2 cut(s) | 581, 1088 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1421 |
| PspCI | CACGTG | 1 cut(s) | 1088 |
| PspEI | GGTNACC | 2 cut(s) | 454, 1492 |
| PspN4I | GGNNCC | 4 cut(s) | 624, 1254, 1439, 1608 |
| PspPI | GGNCC | 1 cut(s) | 1606 |
| PsuI | RGATCY | 2 cut(s) | 588, 622 |
| PsyI | GACNNNGTC | 2 cut(s) | 355, 1490 |
| PvuII | CAGCTG | 1 cut(s) | 212 |
| RsaI | GTAC | 4 cut(s) | 583, 1197, 1245, 1260 |
| RsaNI | GTAC | 4 cut(s) | 582, 1196, 1244, 1259 |
| RseI | CAYNNNNRTG | 2 cut(s) | 569, 1518 |
| SalI | GTCGAC | 1 cut(s) | 1502 |
| SaqAI | TTAA | 7 cut(s) | 57, 206, 327, 512, 1020, 1136, 1202 |
| SatI | GCNGC | 9 cut(s) | 144, 177, 213, 285, 466, 543, 986, 1071, 1178 |
| Sau3AI | GATC | 3 cut(s) | 20, 588, 622 |
| Sau96I | GGNCC | 1 cut(s) | 1606 |
| SchI | GAGTC | 1 cut(s) | 1004 |
| SduI | GDGCHC | 1 cut(s) | 86 |
| SfaNI | GCATC | 3 cut(s) | 945, 1161, 1396 |
| SinI | GGWCC | 1 cut(s) | 1606 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 569, 1518 |
| SmlI | CTYRAG | 1 cut(s) | 1358 |
| SmoI | CTYRAG | 1 cut(s) | 1358 |
| Sse9I | AATT | 7 cut(s) | 102, 111, 420, 678, 1170, 1277, 1615 |
| SsiI | CCGC | 2 cut(s) | 466, 1073 |
| SspMI | CTAG | 4 cut(s) | 378, 825, 959, 1301 |
| StyI | CCWWGG | 1 cut(s) | 1057 |
| TaaI | ACNGT | 6 cut(s) | 325, 505, 1200, 1315, 1342, 1492 |
| TaiI | ACGT | 3 cut(s) | 583, 670, 1090 |
| TaqI | TCGA | 7 cut(s) | 80, 350, 487, 972, 1155, 1353, 1503 |
| TasI | AATT | 7 cut(s) | 102, 111, 420, 678, 1170, 1277, 1615 |
| TatI | WGTACW | 2 cut(s) | 1243, 1258 |
| TauI | GCSGC | 1 cut(s) | 468 |
| TfiI | GAWTC | 1 cut(s) | 650 |
| Tru1I | TTAA | 7 cut(s) | 57, 206, 327, 512, 1020, 1136, 1202 |
| Tru9I | TTAA | 7 cut(s) | 57, 206, 327, 512, 1020, 1136, 1202 |
| TscAI | CASTG | 2 cut(s) | 508, 1189 |
| TseFI | GTSAC | 3 cut(s) | 717, 1009, 1492 |
| TseI | GCWGC | 8 cut(s) | 143, 176, 212, 284, 542, 985, 1070, 1177 |
| Tsp45I | GTSAC | 3 cut(s) | 717, 1009, 1492 |
| TspDTI | ATGAA | 9 cut(s) | 86, 426, 531, 645, 854, 1113, 1158, 1496, 1564 |
| TspGWI | ACGGA | 1 cut(s) | 674 |
| TspRI | CASTG | 2 cut(s) | 508, 1189 |
| Tth111I | GACNNNGTC | 2 cut(s) | 355, 1490 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1262 |
| VpaK11BI | GGWCC | 1 cut(s) | 1606 |
| XceI | RCATGY | 1 cut(s) | 992 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1312 |
| XmiI | GTMKAC | 2 cut(s) | 14, 1503 |
| XspI | CTAG | 4 cut(s) | 378, 825, 959, 1301 |