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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 613 |
| AciI | CCGC | 2 cut(s) | 611, 613 |
| AcuI | CTGAAG | 2 cut(s) | 98, 125 |
| AfaI | GTAC | 1 cut(s) | 563 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 98 |
| AgsI | TTSAA | 2 cut(s) | 48, 568 |
| AhlI | ACTAGT | 1 cut(s) | 426 |
| AjnI | CCWGG | 1 cut(s) | 468 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 241, 273 |
| AluBI | AGCT | 4 cut(s) | 298, 343, 458, 517 |
| AluI | AGCT | 4 cut(s) | 298, 343, 458, 517 |
| Alw26I | GTCTC | 1 cut(s) | 223 |
| ApeKI | GCWGC | 3 cut(s) | 184, 458, 517 |
| AsuHPI | GGTGA | 2 cut(s) | 81, 484 |
| BbvCI | CCTCAGC | 1 cut(s) | 332 |
| BbvI | GCAGC | 3 cut(s) | 171, 445, 504 |
| BccI | CCATC | 1 cut(s) | 17 |
| BceAI | ACGGC | 2 cut(s) | 223, 402 |
| BciT130I | CCWGG | 1 cut(s) | 470 |
| BcoDI | GTCTC | 1 cut(s) | 223 |
| BcuI | ACTAGT | 1 cut(s) | 426 |
| BfaI | CTAG | 1 cut(s) | 427 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 207 |
| BisI | GCNGC | 3 cut(s) | 185, 459, 518 |
| BlsI | GCNGC | 3 cut(s) | 186, 460, 519 |
| Bme1390I | CCNGG | 1 cut(s) | 470 |
| BmrFI | CCNGG | 1 cut(s) | 470 |
| BmsI | GCATC | 1 cut(s) | 150 |
| Bpu10I | CCTNAGC | 3 cut(s) | 137, 287, 332 |
| BsaJI | CCNNGG | 1 cut(s) | 611 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 98 |
| Bse118I | RCCGGY | 1 cut(s) | 180 |
| BseBI | CCWGG | 1 cut(s) | 470 |
| BseDI | CCNNGG | 1 cut(s) | 611 |
| BseGI | GGATG | 1 cut(s) | 28 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 98 |
| BseMII | CTCAG | 1 cut(s) | 323 |
| BseRI | GAGGAG | 5 cut(s) | 97, 277, 280, 322, 325 |
| BseXI | GCAGC | 3 cut(s) | 171, 445, 504 |
| Bsh1236I | CGCG | 1 cut(s) | 613 |
| BsiSI | CCGG | 1 cut(s) | 181 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 98 |
| BsmAI | GTCTC | 1 cut(s) | 223 |
| Bsp143I | GATC | 1 cut(s) | 86 |
| BspACI | CCGC | 2 cut(s) | 611, 613 |
| BspCNI | CTCAG | 1 cut(s) | 324 |
| BspFNI | CGCG | 1 cut(s) | 613 |
| BsrFI | RCCGGY | 1 cut(s) | 180 |
| BssAI | RCCGGY | 1 cut(s) | 180 |
| BssECI | CCNNGG | 1 cut(s) | 611 |
| BssMI | GATC | 1 cut(s) | 86 |
| Bst2UI | CCWGG | 1 cut(s) | 470 |
| Bst4CI | ACNGT | 2 cut(s) | 234, 326 |
| Bst6I | CTCTTC | 2 cut(s) | 74, 221 |
| BstC8I | GCNNGC | 2 cut(s) | 182, 584 |
| BstDEI | CTNAG | 3 cut(s) | 137, 287, 332 |
| BstDSI | CCRYGG | 1 cut(s) | 611 |
| BstF5I | GGATG | 1 cut(s) | 28 |
| BstFNI | CGCG | 1 cut(s) | 613 |
| BstKTI | GATC | 1 cut(s) | 89 |
| BstMAI | GTCTC | 1 cut(s) | 223 |
| BstMBI | GATC | 1 cut(s) | 86 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 207 |
| BstNI | CCWGG | 1 cut(s) | 470 |
| BstNSI | RCATGY | 1 cut(s) | 586 |
| BstSCI | CCNGG | 1 cut(s) | 468 |
| BstUI | CGCG | 1 cut(s) | 613 |
| BstV1I | GCAGC | 3 cut(s) | 171, 445, 504 |
| BtgI | CCRYGG | 1 cut(s) | 611 |
| BtsCI | GGATG | 1 cut(s) | 28 |
| BtsIMutI | CAGTG | 3 cut(s) | 239, 251, 587 |
| Cac8I | GCNNGC | 2 cut(s) | 182, 584 |
| Cfr10I | RCCGGY | 1 cut(s) | 180 |
| Cfr42I | CCGCGG | 1 cut(s) | 614 |
| Csp6I | GTAC | 1 cut(s) | 562 |
| CviAII | CATG | 2 cut(s) | 145, 583 |
| CviQI | GTAC | 1 cut(s) | 562 |
| DdeI | CTNAG | 3 cut(s) | 137, 287, 332 |
| DpnI | GATC | 1 cut(s) | 88 |
| DpnII | GATC | 1 cut(s) | 86 |
| Eam1104I | CTCTTC | 2 cut(s) | 74, 221 |
| EarI | CTCTTC | 2 cut(s) | 74, 221 |
| Eco32I | GATATC | 1 cut(s) | 239 |
| Eco57I | CTGAAG | 2 cut(s) | 98, 125 |
| EcoRII | CCWGG | 1 cut(s) | 468 |
| EcoRV | GATATC | 1 cut(s) | 239 |
| FaeI | CATG | 2 cut(s) | 148, 586 |
| FaiI | YATR | 4 cut(s) | 32, 146, 484, 584 |
| FatI | CATG | 2 cut(s) | 144, 582 |
| Fnu4HI | GCNGC | 3 cut(s) | 185, 459, 518 |
| FokI | GGATG | 1 cut(s) | 35 |
| Fsp4HI | GCNGC | 3 cut(s) | 185, 459, 518 |
| FspBI | CTAG | 1 cut(s) | 427 |
| GluI | GCNGC | 3 cut(s) | 185, 459, 518 |
| HapII | CCGG | 1 cut(s) | 181 |
| Hin1II | CATG | 2 cut(s) | 148, 586 |
| HinfI | GANTC | 1 cut(s) | 132 |
| HpaII | CCGG | 1 cut(s) | 181 |
| HphI | GGTGA | 2 cut(s) | 81, 484 |
| Hpy166II | GTNNAC | 1 cut(s) | 552 |
| Hpy188I | TCNGA | 1 cut(s) | 105 |
| Hpy188III | TCNNGA | 2 cut(s) | 52, 446 |
| Hpy8I | GTNNAC | 1 cut(s) | 552 |
| HpyAV | CCTTC | 3 cut(s) | 143, 264, 591 |
| HpyCH4III | ACNGT | 2 cut(s) | 234, 326 |
| HpyCH4V | TGCA | 3 cut(s) | 364, 520, 582 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 207 |
| HpyF3I | CTNAG | 3 cut(s) | 137, 287, 332 |
| Hsp92II | CATG | 2 cut(s) | 148, 586 |
| KroI | GCCGGC | 1 cut(s) | 180 |
| KroNI | GCCGGC | 1 cut(s) | 182 |
| KspI | CCGCGG | 1 cut(s) | 614 |
| Kzo9I | GATC | 1 cut(s) | 86 |
| LmnI | GCTCC | 2 cut(s) | 455, 466 |
| LpnPI | CCDG | 6 cut(s) | 37, 83, 194, 431, 455, 482 |
| Lsp1109I | GCAGC | 3 cut(s) | 171, 445, 504 |
| LweI | GCATC | 1 cut(s) | 150 |
| MaeI | CTAG | 1 cut(s) | 427 |
| MaeIII | GTNAC | 1 cut(s) | 510 |
| MalI | GATC | 1 cut(s) | 88 |
| MboI | GATC | 1 cut(s) | 86 |
| MboII | GAAGA | 7 cut(s) | 91, 118, 238, 261, 264, 369, 537 |
| MluCI | AATT | 3 cut(s) | 281, 486, 500 |
| MmeI | TCCRAC | 1 cut(s) | 512 |
| MnlI | CCTC | 8 cut(s) | 66, 75, 151, 255, 258, 300, 303, 327 |
| MroNI | GCCGGC | 1 cut(s) | 180 |
| MseI | TTAA | 4 cut(s) | 8, 61, 280, 538 |
| MspA1I | CMGCKG | 2 cut(s) | 517, 613 |
| MspI | CCGG | 1 cut(s) | 181 |
| MspR9I | CCNGG | 1 cut(s) | 470 |
| MvaI | CCWGG | 1 cut(s) | 470 |
| MvnI | CGCG | 1 cut(s) | 613 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 207 |
| NaeI | GCCGGC | 1 cut(s) | 182 |
| NdeII | GATC | 1 cut(s) | 86 |
| NgoMIV | GCCGGC | 1 cut(s) | 180 |
| NlaIII | CATG | 2 cut(s) | 148, 586 |
| NmuCI | GTSAC | 1 cut(s) | 510 |
| NspI | RCATGY | 1 cut(s) | 586 |
| PaeI | GCATGC | 1 cut(s) | 586 |
| PdiI | GCCGGC | 1 cut(s) | 182 |
| PfeI | GAWTC | 1 cut(s) | 132 |
| PkrI | GCNGC | 3 cut(s) | 186, 460, 519 |
| Psp6I | CCWGG | 1 cut(s) | 468 |
| PspGI | CCWGG | 1 cut(s) | 468 |
| PvuII | CAGCTG | 1 cut(s) | 517 |
| RsaI | GTAC | 1 cut(s) | 563 |
| RsaNI | GTAC | 1 cut(s) | 562 |
| SacII | CCGCGG | 1 cut(s) | 614 |
| SaqAI | TTAA | 4 cut(s) | 8, 61, 280, 538 |
| SatI | GCNGC | 3 cut(s) | 185, 459, 518 |
| Sau3AI | GATC | 1 cut(s) | 86 |
| ScrFI | CCNGG | 1 cut(s) | 470 |
| SetI | ASST | 6 cut(s) | 162, 300, 345, 460, 474, 519 |
| SfaNI | GCATC | 1 cut(s) | 150 |
| Sfr303I | CCGCGG | 1 cut(s) | 614 |
| SgrBI | CCGCGG | 1 cut(s) | 614 |
| SpeI | ACTAGT | 1 cut(s) | 426 |
| SphI | GCATGC | 1 cut(s) | 586 |
| Sse9I | AATT | 3 cut(s) | 281, 486, 500 |
| SsiI | CCGC | 2 cut(s) | 611, 613 |
| SspMI | CTAG | 1 cut(s) | 427 |
| StyD4I | CCNGG | 1 cut(s) | 468 |
| TaaI | ACNGT | 2 cut(s) | 234, 326 |
| TasI | AATT | 3 cut(s) | 281, 486, 500 |
| TfiI | GAWTC | 1 cut(s) | 132 |
| Tru1I | TTAA | 4 cut(s) | 8, 61, 280, 538 |
| Tru9I | TTAA | 4 cut(s) | 8, 61, 280, 538 |
| TscAI | CASTG | 3 cut(s) | 239, 251, 594 |
| TseFI | GTSAC | 1 cut(s) | 510 |
| TseI | GCWGC | 3 cut(s) | 184, 458, 517 |
| Tsp45I | GTSAC | 1 cut(s) | 510 |
| TspDTI | ATGAA | 2 cut(s) | 184, 449 |
| TspRI | CASTG | 3 cut(s) | 239, 251, 594 |
| XceI | RCATGY | 1 cut(s) | 586 |
| XspI | CTAG | 1 cut(s) | 427 |