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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 322, 1666 |
| AccB1I | GGYRCC | 1 cut(s) | 170 |
| AccI | GTMKAC | 1 cut(s) | 459 |
| AccIII | TCCGGA | 1 cut(s) | 1637 |
| AciI | CCGC | 6 cut(s) | 29, 339, 839, 1108, 1130, 1874 |
| AclWI | GGATC | 8 cut(s) | 104, 860, 1214, 1227, 1553, 1866, 2017, 2030 |
| AcsI | RAATTY | 5 cut(s) | 115, 306, 488, 1053, 2086 |
| AcuI | CTGAAG | 3 cut(s) | 396, 1614, 1776 |
| AfaI | GTAC | 6 cut(s) | 142, 641, 1265, 1313, 1470, 1780 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 345 |
| AgeI | ACCGGT | 1 cut(s) | 1886 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 399 |
| AjnI | CCWGG | 5 cut(s) | 349, 691, 1021, 1774, 2065 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 918, 950 |
| Alw21I | GWGCWC | 1 cut(s) | 977 |
| Alw26I | GTCTC | 3 cut(s) | 79, 1154, 1963 |
| AlwI | GGATC | 8 cut(s) | 104, 860, 1214, 1227, 1553, 1866, 2017, 2030 |
| Aor13HI | TCCGGA | 1 cut(s) | 1637 |
| AoxI | GGCC | 5 cut(s) | 347, 465, 1787, 1963, 2063 |
| ApeKI | GCWGC | 8 cut(s) | 164, 365, 368, 371, 633, 733, 1192, 1241 |
| ApoI | RAATTY | 5 cut(s) | 115, 306, 488, 1053, 2086 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1941, 1973 |
| AseI | ATTAAT | 1 cut(s) | 699 |
| AsiGI | ACCGGT | 1 cut(s) | 1886 |
| AspA2I | CCTAGG | 1 cut(s) | 1402 |
| AspS9I | GGNCC | 7 cut(s) | 466, 1171, 1415, 1640, 1655, 1934, 1964 |
| AsuC2I | CCSGG | 2 cut(s) | 44, 294 |
| AsuHPI | GGTGA | 5 cut(s) | 1065, 1700, 1837, 1862, 1876 |
| AvaII | GGWCC | 5 cut(s) | 1171, 1415, 1640, 1655, 1934 |
| AvrII | CCTAGG | 1 cut(s) | 1402 |
| AxyI | CCTNAGG | 2 cut(s) | 270, 714 |
| BaeGI | GKGCMC | 2 cut(s) | 1390, 2047 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1617, 1650 |
| BamHI | GGATCC | 2 cut(s) | 1219, 2022 |
| BanI | GGYRCC | 1 cut(s) | 170 |
| Bbv12I | GWGCWC | 1 cut(s) | 977 |
| BbvCI | CCTCAGC | 1 cut(s) | 1423 |
| BbvI | GCAGC | 8 cut(s) | 151, 355, 377, 383, 645, 745, 1204, 1228 |
| BccI | CCATC | 5 cut(s) | 152, 1084, 1192, 1570, 1826 |
| BceAI | ACGGC | 2 cut(s) | 879, 1802 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2000, 2034 |
| BciT130I | CCWGG | 5 cut(s) | 351, 693, 1023, 1776, 2067 |
| BciVI | GTATCC | 1 cut(s) | 1645 |
| BclI | TGATCA | 3 cut(s) | 286, 580, 1993 |
| BcnI | CCSGG | 2 cut(s) | 44, 294 |
| BcoDI | GTCTC | 3 cut(s) | 79, 1154, 1963 |
| BfaI | CTAG | 6 cut(s) | 989, 1359, 1403, 1545, 1593, 1737 |
| BfmI | CTRYAG | 3 cut(s) | 363, 369, 1190 |
| BfuAI | ACCTGC | 2 cut(s) | 322, 1666 |
| BfuI | GTATCC | 1 cut(s) | 1645 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 355 |
| BlnI | CCTAGG | 1 cut(s) | 1402 |
| BlpI | GCTNAGC | 1 cut(s) | 327 |
| BmcAI | AGTACT | 1 cut(s) | 1265 |
| Bme1390I | CCNGG | 7 cut(s) | 44, 294, 351, 693, 1023, 1776, 2067 |
| Bme18I | GGWCC | 5 cut(s) | 1171, 1415, 1640, 1655, 1934 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 399 |
| BmgT120I | GGNCC | 7 cut(s) | 466, 1171, 1415, 1640, 1655, 1934, 1964 |
| BmiI | GGNNCC | 7 cut(s) | 105, 172, 940, 1221, 1408, 1936, 2024 |
| BmrFI | CCNGG | 7 cut(s) | 44, 294, 351, 693, 1023, 1776, 2067 |
| BmsI | GCATC | 5 cut(s) | 692, 1324, 1445, 1854, 1989 |
| BpmI | CTGGAG | 1 cut(s) | 906 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1423 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 327 |
| BpuMI | CCSGG | 2 cut(s) | 44, 294 |
| BsaBI | GATNNNNATC | 1 cut(s) | 870 |
| BsaJI | CCNNGG | 5 cut(s) | 107, 692, 1402, 1651, 1938 |
| BsaWI | WCCGGW | 2 cut(s) | 1637, 1886 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 964, 994, 1669, 1699, 1732, 1762 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 345 |
| Bse118I | RCCGGY | 2 cut(s) | 173, 1886 |
| Bse1I | ACTGG | 1 cut(s) | 982 |
| Bse21I | CCTNAGG | 2 cut(s) | 270, 714 |
| Bse8I | GATNNNNATC | 1 cut(s) | 870 |
| BseAI | TCCGGA | 1 cut(s) | 1637 |
| BseBI | CCWGG | 5 cut(s) | 351, 693, 1023, 1776, 2067 |
| BseDI | CCNNGG | 5 cut(s) | 107, 692, 1402, 1651, 1938 |
| BseGI | GGATG | 5 cut(s) | 163, 289, 583, 1562, 1647 |
| BseJI | GATNNNNATC | 1 cut(s) | 870 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 345 |
| BseNI | ACTGG | 1 cut(s) | 982 |
| BseSI | GKGCMC | 2 cut(s) | 1390, 2047 |
| BseXI | GCAGC | 8 cut(s) | 151, 355, 377, 383, 645, 745, 1204, 1228 |
| BseYI | CCCAGC | 1 cut(s) | 341 |
| BshFI | GGCC | 5 cut(s) | 349, 467, 1789, 1965, 2065 |
| BshNI | GGYRCC | 1 cut(s) | 170 |
| BshTI | ACCGGT | 1 cut(s) | 1886 |
| BsiHKAI | GWGCWC | 1 cut(s) | 977 |
| BsiSI | CCGG | 5 cut(s) | 43, 174, 293, 1638, 1887 |
| BslFI | GGGAC | 2 cut(s) | 1920, 2092 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 345 |
| BsmAI | GTCTC | 3 cut(s) | 79, 1154, 1963 |
| BsmFI | GGGAC | 2 cut(s) | 1920, 2092 |
| BsmI | GAATGC | 2 cut(s) | 984, 1111 |
| BsnI | GGCC | 5 cut(s) | 349, 467, 1789, 1965, 2065 |
| Bsp1286I | GDGCHC | 3 cut(s) | 977, 1390, 2047 |
| Bsp13I | TCCGGA | 1 cut(s) | 1637 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 327 |
| Bsp19I | CCATGG | 1 cut(s) | 1651 |
| BspACI | CCGC | 6 cut(s) | 29, 339, 839, 1108, 1130, 1874 |
| BspANI | GGCC | 5 cut(s) | 349, 467, 1789, 1965, 2065 |
| BspEI | TCCGGA | 1 cut(s) | 1637 |
| BspHI | TCATGA | 1 cut(s) | 1551 |
| BspLI | GGNNCC | 7 cut(s) | 105, 172, 940, 1221, 1408, 1936, 2024 |
| BspMAI | CTGCAG | 3 cut(s) | 367, 373, 1194 |
| BspMI | ACCTGC | 2 cut(s) | 322, 1666 |
| BspPI | GGATC | 8 cut(s) | 104, 860, 1214, 1227, 1553, 1866, 2017, 2030 |
| BspT107I | GGYRCC | 1 cut(s) | 170 |
| BsrFI | RCCGGY | 2 cut(s) | 173, 1886 |
| BsrI | ACTGG | 1 cut(s) | 982 |
| BssAI | RCCGGY | 2 cut(s) | 173, 1886 |
| BssECI | CCNNGG | 5 cut(s) | 107, 692, 1402, 1651, 1938 |
| BssT1I | CCWWGG | 3 cut(s) | 1402, 1651, 1938 |
| Bst2UI | CCWGG | 5 cut(s) | 351, 693, 1023, 1776, 2067 |
| Bst4CI | ACNGT | 9 cut(s) | 111, 280, 322, 761, 785, 878, 1044, 1120, 1572 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 981, 1433, 1442 |
| BstC8I | GCNNGC | 1 cut(s) | 856 |
| BstDSI | CCRYGG | 2 cut(s) | 107, 1651 |
| BstF5I | GGATG | 5 cut(s) | 163, 289, 583, 1562, 1647 |
| BstMAI | GTCTC | 3 cut(s) | 79, 1154, 1963 |
| BstNI | CCWGG | 5 cut(s) | 351, 693, 1023, 1776, 2067 |
| BstNSI | RCATGY | 1 cut(s) | 733 |
| BstSCI | CCNGG | 7 cut(s) | 42, 292, 349, 691, 1021, 1774, 2065 |
| BstSFI | CTRYAG | 3 cut(s) | 363, 369, 1190 |
| BstSLI | GKGCMC | 2 cut(s) | 1390, 2047 |
| BstV1I | GCAGC | 8 cut(s) | 151, 355, 377, 383, 645, 745, 1204, 1228 |
| BstX2I | RGATCY | 2 cut(s) | 1219, 2022 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1282 |
| BstYI | RGATCY | 2 cut(s) | 1219, 2022 |
| Bsu36I | CCTNAGG | 2 cut(s) | 270, 714 |
| BsuI | GTATCC | 1 cut(s) | 1645 |
| BsuRI | GGCC | 5 cut(s) | 349, 467, 1789, 1965, 2065 |
| BtgI | CCRYGG | 2 cut(s) | 107, 1651 |
| BtsCI | GGATG | 5 cut(s) | 163, 289, 583, 1562, 1647 |
| BtsI | GCAGTG | 1 cut(s) | 966 |
| BtsIMutI | CAGTG | 9 cut(s) | 220, 528, 751, 757, 883, 884, 966, 975, 1125 |
| BveI | ACCTGC | 2 cut(s) | 322, 1666 |
| Cac8I | GCNNGC | 1 cut(s) | 856 |
| CciI | TCATGA | 1 cut(s) | 1551 |
| Cfr10I | RCCGGY | 2 cut(s) | 173, 1886 |
| Cfr13I | GGNCC | 7 cut(s) | 466, 1171, 1415, 1640, 1655, 1934, 1964 |
| CseI | GACGC | 3 cut(s) | 445, 1598, 1856 |
| CsiI | ACCWGGT | 1 cut(s) | 1774 |
| Csp6I | GTAC | 6 cut(s) | 141, 640, 1264, 1312, 1469, 1779 |
| CspAI | ACCGGT | 1 cut(s) | 1886 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 879, 914 |
| CviAII | CATG | 7 cut(s) | 665, 730, 770, 1552, 1652, 1662, 2012 |
| CviQI | GTAC | 6 cut(s) | 141, 640, 1264, 1312, 1469, 1779 |
| DriI | GACNNNNNGTC | 1 cut(s) | 399 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 399 |
| Eco130I | CCWWGG | 3 cut(s) | 1402, 1651, 1938 |
| Eco147I | AGGCCT | 1 cut(s) | 2065 |
| Eco47I | GGWCC | 5 cut(s) | 1171, 1415, 1640, 1655, 1934 |
| Eco57I | CTGAAG | 3 cut(s) | 396, 1614, 1776 |
| Eco81I | CCTNAGG | 2 cut(s) | 270, 714 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1171 |
| EcoRI | GAATTC | 2 cut(s) | 115, 306 |
| EcoRII | CCWGG | 5 cut(s) | 349, 691, 1021, 1774, 2065 |
| EcoT14I | CCWWGG | 3 cut(s) | 1402, 1651, 1938 |
| ErhI | CCWWGG | 3 cut(s) | 1402, 1651, 1938 |
| FaeI | CATG | 7 cut(s) | 668, 733, 773, 1555, 1655, 1665, 2015 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 52, 84 |
| FaqI | GGGAC | 2 cut(s) | 1920, 2092 |
| FatI | CATG | 7 cut(s) | 664, 729, 769, 1551, 1651, 1661, 2011 |
| FauI | CCCGC | 1 cut(s) | 1881 |
| FbaI | TGATCA | 3 cut(s) | 286, 580, 1993 |
| FblI | GTMKAC | 1 cut(s) | 459 |
| FokI | GGATG | 5 cut(s) | 170, 276, 570, 1549, 1634 |
| FspBI | CTAG | 6 cut(s) | 989, 1359, 1403, 1545, 1593, 1737 |
| GsaI | CCCAGC | 1 cut(s) | 345 |
| GsuI | CTGGAG | 1 cut(s) | 906 |
| HaeIII | GGCC | 5 cut(s) | 349, 467, 1789, 1965, 2065 |
| HapII | CCGG | 5 cut(s) | 43, 174, 293, 1638, 1887 |
| HgaI | GACGC | 3 cut(s) | 445, 1598, 1856 |
| Hin1II | CATG | 7 cut(s) | 668, 733, 773, 1555, 1655, 1665, 2015 |
| HincII | GTYRAC | 2 cut(s) | 814, 1458 |
| HindII | GTYRAC | 2 cut(s) | 814, 1458 |
| HindIII | AAGCTT | 1 cut(s) | 856 |
| HinfI | GANTC | 4 cut(s) | 825, 1454, 1691, 1881 |
| HpaII | CCGG | 5 cut(s) | 43, 174, 293, 1638, 1887 |
| HphI | GGTGA | 5 cut(s) | 1065, 1700, 1837, 1862, 1876 |
| Hpy166II | GTNNAC | 5 cut(s) | 460, 749, 814, 1208, 1458 |
| Hpy8I | GTNNAC | 5 cut(s) | 460, 749, 814, 1208, 1458 |
| Hpy99I | CGWCG | 3 cut(s) | 405, 2022, 2043 |
| HpyAV | CCTTC | 6 cut(s) | 33, 599, 1184, 1305, 1356, 1377 |
| HpyCH4III | ACNGT | 9 cut(s) | 111, 280, 322, 761, 785, 878, 1044, 1120, 1572 |
| HpyCH4IV | ACGT | 1 cut(s) | 1684 |
| HpySE526I | ACGT | 1 cut(s) | 1684 |
| Hsp92II | CATG | 7 cut(s) | 668, 733, 773, 1555, 1655, 1665, 2015 |
| Kpn2I | TCCGGA | 1 cut(s) | 1637 |
| Ksp22I | TGATCA | 3 cut(s) | 286, 580, 1993 |
| LmnI | GCTCC | 4 cut(s) | 938, 972, 1370, 1753 |
| Lsp1109I | GCAGC | 8 cut(s) | 151, 355, 377, 383, 645, 745, 1204, 1228 |
| LweI | GCATC | 5 cut(s) | 692, 1324, 1445, 1854, 1989 |
| MabI | ACCWGGT | 1 cut(s) | 1774 |
| MaeI | CTAG | 6 cut(s) | 989, 1359, 1403, 1545, 1593, 1737 |
| MaeII | ACGT | 1 cut(s) | 1684 |
| MaeIII | GTNAC | 6 cut(s) | 274, 316, 785, 901, 1868, 1968 |
| MflI | RGATCY | 2 cut(s) | 1219, 2022 |
| MhlI | GDGCHC | 3 cut(s) | 977, 1390, 2047 |
| MlyI | GAGTC | 1 cut(s) | 1463 |
| MmeI | TCCRAC | 1 cut(s) | 2000 |
| MroI | TCCGGA | 1 cut(s) | 1637 |
| MseI | TTAA | 9 cut(s) | 8, 425, 699, 720, 753, 1059, 1167, 2004, 2110 |
| MslI | CAYNNNNRTG | 3 cut(s) | 588, 768, 876 |
| MspA1I | CMGCKG | 4 cut(s) | 341, 368, 374, 1195 |
| MspI | CCGG | 5 cut(s) | 43, 174, 293, 1638, 1887 |
| MspR9I | CCNGG | 7 cut(s) | 44, 294, 351, 693, 1023, 1776, 2067 |
| Mva1269I | GAATGC | 2 cut(s) | 984, 1111 |
| MvaI | CCWGG | 5 cut(s) | 351, 693, 1023, 1776, 2067 |
| NciI | CCSGG | 2 cut(s) | 44, 294 |
| NcoI | CCATGG | 1 cut(s) | 1651 |
| NlaIII | CATG | 7 cut(s) | 668, 733, 773, 1555, 1655, 1665, 2015 |
| NlaIV | GGNNCC | 7 cut(s) | 105, 172, 940, 1221, 1408, 1936, 2024 |
| NmuCI | GTSAC | 2 cut(s) | 785, 1868 |
| NspI | RCATGY | 1 cut(s) | 733 |
| PagI | TCATGA | 1 cut(s) | 1551 |
| PceI | AGGCCT | 1 cut(s) | 2065 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2044 |
| PctI | GAATGC | 2 cut(s) | 984, 1111 |
| PfeI | GAWTC | 3 cut(s) | 825, 1691, 1881 |
| PinAI | ACCGGT | 1 cut(s) | 1886 |
| PleI | GAGTC | 1 cut(s) | 1462 |
| PpsI | GAGTC | 1 cut(s) | 1462 |
| PpuMI | RGGWCCY | 1 cut(s) | 1171 |
| PshBI | ATTAAT | 1 cut(s) | 699 |
| Psp5II | RGGWCCY | 1 cut(s) | 1171 |
| Psp6I | CCWGG | 5 cut(s) | 349, 691, 1021, 1774, 2065 |
| PspFI | CCCAGC | 1 cut(s) | 341 |
| PspGI | CCWGG | 5 cut(s) | 349, 691, 1021, 1774, 2065 |
| PspN4I | GGNNCC | 7 cut(s) | 105, 172, 940, 1221, 1408, 1936, 2024 |
| PspPI | GGNCC | 7 cut(s) | 466, 1171, 1415, 1640, 1655, 1934, 1964 |
| PspPPI | RGGWCCY | 1 cut(s) | 1171 |
| PstI | CTGCAG | 3 cut(s) | 367, 373, 1194 |
| PsuI | RGATCY | 2 cut(s) | 1219, 2022 |
| PvuII | CAGCTG | 3 cut(s) | 368, 374, 1195 |
| RsaI | GTAC | 6 cut(s) | 142, 641, 1265, 1313, 1470, 1780 |
| RsaNI | GTAC | 6 cut(s) | 141, 640, 1264, 1312, 1469, 1779 |
| RseI | CAYNNNNRTG | 3 cut(s) | 588, 768, 876 |
| SaqAI | TTAA | 9 cut(s) | 8, 425, 699, 720, 753, 1059, 1167, 2004, 2110 |
| Sau96I | GGNCC | 7 cut(s) | 466, 1171, 1415, 1640, 1655, 1934, 1964 |
| ScaI | AGTACT | 1 cut(s) | 1265 |
| SchI | GAGTC | 1 cut(s) | 1463 |
| ScrFI | CCNGG | 7 cut(s) | 44, 294, 351, 693, 1023, 1776, 2067 |
| SduI | GDGCHC | 3 cut(s) | 977, 1390, 2047 |
| SexAI | ACCWGGT | 1 cut(s) | 1774 |
| SfaNI | GCATC | 5 cut(s) | 692, 1324, 1445, 1854, 1989 |
| SfcI | CTRYAG | 3 cut(s) | 363, 369, 1190 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1886 |
| SinI | GGWCC | 5 cut(s) | 1171, 1415, 1640, 1655, 1934 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 588, 768, 876 |
| SseBI | AGGCCT | 1 cut(s) | 2065 |
| SsiI | CCGC | 6 cut(s) | 29, 339, 839, 1108, 1130, 1874 |
| SspMI | CTAG | 6 cut(s) | 989, 1359, 1403, 1545, 1593, 1737 |
| StuI | AGGCCT | 1 cut(s) | 2065 |
| StyD4I | CCNGG | 7 cut(s) | 42, 292, 349, 691, 1021, 1774, 2065 |
| StyI | CCWWGG | 3 cut(s) | 1402, 1651, 1938 |
| TaaI | ACNGT | 9 cut(s) | 111, 280, 322, 761, 785, 878, 1044, 1120, 1572 |
| TaiI | ACGT | 1 cut(s) | 1687 |
| TaqI | TCGA | 5 cut(s) | 77, 403, 916, 1231, 2038 |
| TatI | WGTACW | 2 cut(s) | 1263, 1468 |
| TauI | GCSGC | 2 cut(s) | 341, 1111 |
| TfiI | GAWTC | 3 cut(s) | 825, 1691, 1881 |
| Tru1I | TTAA | 9 cut(s) | 8, 425, 699, 720, 753, 1059, 1167, 2004, 2110 |
| Tru9I | TTAA | 9 cut(s) | 8, 425, 699, 720, 753, 1059, 1167, 2004, 2110 |
| TscAI | CASTG | 9 cut(s) | 220, 535, 751, 764, 883, 891, 966, 982, 1125 |
| TseFI | GTSAC | 2 cut(s) | 785, 1868 |
| TseI | GCWGC | 8 cut(s) | 164, 365, 368, 371, 633, 733, 1192, 1241 |
| Tsp45I | GTSAC | 2 cut(s) | 785, 1868 |
| TspDTI | ATGAA | 2 cut(s) | 1540, 2079 |
| TspGWI | ACGGA | 2 cut(s) | 637, 1595 |
| TspRI | CASTG | 9 cut(s) | 220, 535, 751, 764, 883, 891, 966, 982, 1125 |
| VpaK11BI | GGWCC | 5 cut(s) | 1171, 1415, 1640, 1655, 1934 |
| VspI | ATTAAT | 1 cut(s) | 699 |
| XapI | RAATTY | 5 cut(s) | 115, 306, 488, 1053, 2086 |
| XceI | RCATGY | 1 cut(s) | 733 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1279 |
| XmaJI | CCTAGG | 1 cut(s) | 1402 |
| XmiI | GTMKAC | 1 cut(s) | 459 |
| XspI | CTAG | 6 cut(s) | 989, 1359, 1403, 1545, 1593, 1737 |
| ZrmI | AGTACT | 1 cut(s) | 1265 |