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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 143 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 33 |
| AciI | CCGC | 2 cut(s) | 407, 908 |
| AclWI | GGATC | 2 cut(s) | 44, 652 |
| AdeI | CACNNNGTG | 1 cut(s) | 764 |
| AfaI | GTAC | 2 cut(s) | 540, 634 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 33, 194, 393 |
| AgsI | TTSAA | 6 cut(s) | 70, 583, 614, 956, 1097, 1141 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1019, 1051 |
| AluBI | AGCT | 3 cut(s) | 846, 866, 971 |
| AluI | AGCT | 3 cut(s) | 846, 866, 971 |
| Alw21I | GWGCWC | 1 cut(s) | 868 |
| Alw26I | GTCTC | 2 cut(s) | 129, 176 |
| AlwI | GGATC | 2 cut(s) | 44, 652 |
| AoxI | GGCC | 3 cut(s) | 24, 664, 992 |
| ApeKI | GCWGC | 1 cut(s) | 524 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 717, 749 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 502 |
| AspS9I | GGNCC | 4 cut(s) | 24, 568, 928, 993 |
| AsuHPI | GGTGA | 2 cut(s) | 17, 750 |
| AvaII | GGWCC | 2 cut(s) | 568, 928 |
| BanII | GRGCYC | 1 cut(s) | 868 |
| Bbv12I | GWGCWC | 1 cut(s) | 868 |
| BbvI | GCAGC | 1 cut(s) | 511 |
| BccI | CCATC | 5 cut(s) | 53, 125, 446, 872, 905 |
| BcoDI | GTCTC | 2 cut(s) | 129, 176 |
| BfaI | CTAG | 2 cut(s) | 425, 762 |
| BisI | GCNGC | 2 cut(s) | 408, 525 |
| BlsI | GCNGC | 2 cut(s) | 409, 526 |
| Bme18I | GGWCC | 2 cut(s) | 568, 928 |
| BmgT120I | GGNCC | 4 cut(s) | 24, 568, 928, 993 |
| BmiI | GGNNCC | 1 cut(s) | 930 |
| BmsI | GCATC | 4 cut(s) | 355, 637, 1118, 1127 |
| BoxI | GACNNNNGTC | 1 cut(s) | 49 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 855, 887 |
| BpuEI | CTTGAG | 1 cut(s) | 513 |
| BsaI | GGTCTC | 1 cut(s) | 129 |
| BsaJI | CCNNGG | 3 cut(s) | 54, 387, 549 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 33, 194, 393 |
| Bse1I | ACTGG | 1 cut(s) | 781 |
| BseDI | CCNNGG | 3 cut(s) | 54, 387, 549 |
| BseGI | GGATG | 3 cut(s) | 64, 370, 679 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 33, 194, 393 |
| BseMII | CTCAG | 3 cut(s) | 693, 759, 1038 |
| BseNI | ACTGG | 1 cut(s) | 781 |
| BseRI | GAGGAG | 2 cut(s) | 353, 404 |
| BseXI | GCAGC | 1 cut(s) | 511 |
| BshFI | GGCC | 3 cut(s) | 26, 666, 994 |
| BsiHKAI | GWGCWC | 1 cut(s) | 868 |
| BslFI | GGGAC | 1 cut(s) | 914 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 33, 194, 393 |
| BsmAI | GTCTC | 2 cut(s) | 129, 176 |
| BsmFI | GGGAC | 1 cut(s) | 914 |
| BsmI | GAATGC | 1 cut(s) | 754 |
| BsnI | GGCC | 3 cut(s) | 26, 666, 994 |
| Bso31I | GGTCTC | 1 cut(s) | 129 |
| Bsp1286I | GDGCHC | 1 cut(s) | 868 |
| Bsp143I | GATC | 3 cut(s) | 36, 604, 644 |
| BspACI | CCGC | 2 cut(s) | 407, 908 |
| BspANI | GGCC | 3 cut(s) | 26, 666, 994 |
| BspCNI | CTCAG | 3 cut(s) | 694, 760, 1039 |
| BspHI | TCATGA | 1 cut(s) | 838 |
| BspLI | GGNNCC | 1 cut(s) | 930 |
| BspPI | GGATC | 2 cut(s) | 44, 652 |
| BspTNI | GGTCTC | 1 cut(s) | 129 |
| BsrI | ACTGG | 1 cut(s) | 781 |
| BssECI | CCNNGG | 3 cut(s) | 54, 387, 549 |
| BssMI | GATC | 3 cut(s) | 36, 604, 644 |
| BssT1I | CCWWGG | 1 cut(s) | 54 |
| Bst4CI | ACNGT | 3 cut(s) | 286, 826, 961 |
| Bst6I | CTCTTC | 4 cut(s) | 196, 241, 312, 1049 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 416 |
| BstC8I | GCNNGC | 2 cut(s) | 741, 969 |
| BstDEI | CTNAG | 4 cut(s) | 702, 768, 1047, 1087 |
| BstDSI | CCRYGG | 1 cut(s) | 549 |
| BstF5I | GGATG | 3 cut(s) | 64, 370, 679 |
| BstKTI | GATC | 3 cut(s) | 39, 607, 647 |
| BstMAI | GTCTC | 2 cut(s) | 129, 176 |
| BstMBI | GATC | 3 cut(s) | 36, 604, 644 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 404, 416, 1115 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 49 |
| BstV1I | GCAGC | 1 cut(s) | 511 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 829 |
| BsuRI | GGCC | 3 cut(s) | 26, 666, 994 |
| BtgI | CCRYGG | 1 cut(s) | 549 |
| BtgZI | GCGATG | 1 cut(s) | 891 |
| BtsCI | GGATG | 3 cut(s) | 64, 370, 679 |
| BtsI | GCAGTG | 1 cut(s) | 594 |
| BtsIMutI | CAGTG | 2 cut(s) | 594, 822 |
| Cac8I | GCNNGC | 2 cut(s) | 741, 969 |
| CciI | TCATGA | 1 cut(s) | 838 |
| Cfr13I | GGNCC | 4 cut(s) | 24, 568, 928, 993 |
| Csp6I | GTAC | 2 cut(s) | 539, 633 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 531, 566 |
| CviJI | RGCY | 8 cut(s) | 26, 524, 666, 739, 846, 866, 971, 994 |
| CviKI_1 | RGCY | 8 cut(s) | 26, 524, 666, 739, 846, 866, 971, 994 |
| CviQI | GTAC | 2 cut(s) | 539, 633 |
| DdeI | CTNAG | 4 cut(s) | 702, 768, 1047, 1087 |
| DpnI | GATC | 3 cut(s) | 38, 606, 646 |
| DpnII | GATC | 3 cut(s) | 36, 604, 644 |
| DraIII | CACNNNGTG | 1 cut(s) | 764 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 143 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 143 |
| Eam1104I | CTCTTC | 4 cut(s) | 196, 241, 312, 1049 |
| EarI | CTCTTC | 4 cut(s) | 196, 241, 312, 1049 |
| Ecl136II | GAGCTC | 1 cut(s) | 866 |
| Eco130I | CCWWGG | 1 cut(s) | 54 |
| Eco147I | AGGCCT | 1 cut(s) | 666 |
| Eco24I | GRGCYC | 1 cut(s) | 868 |
| Eco31I | GGTCTC | 1 cut(s) | 129 |
| Eco47I | GGWCC | 2 cut(s) | 568, 928 |
| Eco53kI | GAGCTC | 1 cut(s) | 866 |
| EcoICRI | GAGCTC | 1 cut(s) | 866 |
| EcoO109I | RGGNCCY | 1 cut(s) | 928 |
| EcoT14I | CCWWGG | 1 cut(s) | 54 |
| EcoT22I | ATGCAT | 1 cut(s) | 630 |
| EcoT38I | GRGCYC | 1 cut(s) | 868 |
| ErhI | CCWWGG | 1 cut(s) | 54 |
| FaqI | GGGAC | 1 cut(s) | 914 |
| FauNDI | CATATG | 2 cut(s) | 249, 481 |
| Fnu4HI | GCNGC | 2 cut(s) | 408, 525 |
| FokI | GGATG | 3 cut(s) | 71, 377, 686 |
| FriOI | GRGCYC | 1 cut(s) | 868 |
| Fsp4HI | GCNGC | 2 cut(s) | 408, 525 |
| FspBI | CTAG | 2 cut(s) | 425, 762 |
| GluI | GCNGC | 2 cut(s) | 408, 525 |
| HaeIII | GGCC | 3 cut(s) | 26, 666, 994 |
| HincII | GTYRAC | 3 cut(s) | 708, 721, 802 |
| HindII | GTYRAC | 3 cut(s) | 708, 721, 802 |
| HinfI | GANTC | 4 cut(s) | 107, 184, 428, 1133 |
| HphI | GGTGA | 2 cut(s) | 17, 750 |
| Hpy166II | GTNNAC | 5 cut(s) | 506, 568, 708, 721, 802 |
| Hpy188III | TCNNGA | 6 cut(s) | 34, 166, 188, 530, 655, 839 |
| Hpy8I | GTNNAC | 5 cut(s) | 506, 568, 708, 721, 802 |
| HpyAV | CCTTC | 4 cut(s) | 634, 652, 656, 1060 |
| HpyCH4III | ACNGT | 3 cut(s) | 286, 826, 961 |
| HpyCH4V | TGCA | 7 cut(s) | 208, 301, 368, 419, 443, 628, 743 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 404, 416, 1115 |
| HpyF3I | CTNAG | 4 cut(s) | 702, 768, 1047, 1087 |
| Kzo9I | GATC | 3 cut(s) | 36, 604, 644 |
| LmnI | GCTCC | 4 cut(s) | 692, 851, 863, 871 |
| LpnPI | CCDG | 9 cut(s) | 19, 201, 474, 749, 753, 794, 951, 1044, 1143 |
| Lsp1109I | GCAGC | 1 cut(s) | 511 |
| LweI | GCATC | 4 cut(s) | 355, 637, 1118, 1127 |
| MaeI | CTAG | 2 cut(s) | 425, 762 |
| MaeIII | GTNAC | 3 cut(s) | 155, 463, 1014 |
| MalI | GATC | 3 cut(s) | 38, 606, 646 |
| MboI | GATC | 3 cut(s) | 36, 604, 644 |
| MboII | GAAGA | 9 cut(s) | 127, 213, 228, 329, 461, 566, 1036, 1063, 1066 |
| MhlI | GDGCHC | 1 cut(s) | 868 |
| MluCI | AATT | 4 cut(s) | 457, 951, 1097, 1124 |
| MlyI | GAGTC | 1 cut(s) | 178 |
| MmeI | TCCRAC | 1 cut(s) | 159 |
| Mph1103I | ATGCAT | 1 cut(s) | 630 |
| MroXI | GAANNNNTTC | 1 cut(s) | 502 |
| MseI | TTAA | 3 cut(s) | 774, 942, 963 |
| MslI | CAYNNNNRTG | 1 cut(s) | 827 |
| Mva1269I | GAATGC | 1 cut(s) | 754 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 404, 416, 1115 |
| NdeI | CATATG | 2 cut(s) | 249, 481 |
| NdeII | GATC | 3 cut(s) | 36, 604, 644 |
| NlaIV | GGNNCC | 1 cut(s) | 930 |
| NmeAIII | GCCGAG | 2 cut(s) | 412, 852 |
| NmuCI | GTSAC | 2 cut(s) | 155, 1014 |
| NsiI | ATGCAT | 1 cut(s) | 630 |
| PagI | TCATGA | 1 cut(s) | 838 |
| PceI | AGGCCT | 1 cut(s) | 666 |
| PctI | GAATGC | 1 cut(s) | 754 |
| PdmI | GAANNNNTTC | 1 cut(s) | 502 |
| PfeI | GAWTC | 3 cut(s) | 107, 428, 1133 |
| PflFI | GACNNNGTC | 1 cut(s) | 161 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 33 |
| PkrI | GCNGC | 2 cut(s) | 409, 526 |
| PleI | GAGTC | 1 cut(s) | 178 |
| PpsI | GAGTC | 1 cut(s) | 178 |
| PpuMI | RGGWCCY | 1 cut(s) | 928 |
| PshAI | GACNNNNGTC | 1 cut(s) | 49 |
| Psp124BI | GAGCTC | 1 cut(s) | 868 |
| Psp5II | RGGWCCY | 1 cut(s) | 928 |
| PspN4I | GGNNCC | 1 cut(s) | 930 |
| PspPI | GGNCC | 4 cut(s) | 24, 568, 928, 993 |
| PspPPI | RGGWCCY | 1 cut(s) | 928 |
| PsyI | GACNNNGTC | 1 cut(s) | 161 |
| RsaI | GTAC | 2 cut(s) | 540, 634 |
| RsaNI | GTAC | 2 cut(s) | 539, 633 |
| RseI | CAYNNNNRTG | 1 cut(s) | 827 |
| SacI | GAGCTC | 1 cut(s) | 868 |
| SaqAI | TTAA | 3 cut(s) | 774, 942, 963 |
| SatI | GCNGC | 2 cut(s) | 408, 525 |
| Sau3AI | GATC | 3 cut(s) | 36, 604, 644 |
| Sau96I | GGNCC | 4 cut(s) | 24, 568, 928, 993 |
| SchI | GAGTC | 1 cut(s) | 178 |
| SduI | GDGCHC | 1 cut(s) | 868 |
| SfaNI | GCATC | 4 cut(s) | 355, 637, 1118, 1127 |
| SinI | GGWCC | 2 cut(s) | 568, 928 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 827 |
| SmlI | CTYRAG | 1 cut(s) | 528 |
| SmoI | CTYRAG | 1 cut(s) | 528 |
| Sse9I | AATT | 4 cut(s) | 457, 951, 1097, 1124 |
| SseBI | AGGCCT | 1 cut(s) | 666 |
| SsiI | CCGC | 2 cut(s) | 407, 908 |
| SspMI | CTAG | 2 cut(s) | 425, 762 |
| SstI | GAGCTC | 1 cut(s) | 868 |
| StuI | AGGCCT | 1 cut(s) | 666 |
| StyI | CCWWGG | 1 cut(s) | 54 |
| TaaI | ACNGT | 3 cut(s) | 286, 826, 961 |
| TaqI | TCGA | 2 cut(s) | 147, 360 |
| TasI | AATT | 4 cut(s) | 457, 951, 1097, 1124 |
| TauI | GCSGC | 1 cut(s) | 410 |
| TfiI | GAWTC | 3 cut(s) | 107, 428, 1133 |
| Tru1I | TTAA | 3 cut(s) | 774, 942, 963 |
| Tru9I | TTAA | 3 cut(s) | 774, 942, 963 |
| TscAI | CASTG | 2 cut(s) | 594, 829 |
| TseFI | GTSAC | 2 cut(s) | 155, 1014 |
| TseI | GCWGC | 1 cut(s) | 524 |
| Tsp45I | GTSAC | 2 cut(s) | 155, 1014 |
| TspDTI | ATGAA | 4 cut(s) | 90, 128, 848, 963 |
| TspGWI | ACGGA | 1 cut(s) | 274 |
| TspRI | CASTG | 2 cut(s) | 594, 829 |
| Tth111I | GACNNNGTC | 1 cut(s) | 161 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 33 |
| VpaK11BI | GGWCC | 2 cut(s) | 568, 928 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 857 |
| XmnI | GAANNNNTTC | 1 cut(s) | 502 |
| XspI | CTAG | 2 cut(s) | 425, 762 |
| Zsp2I | ATGCAT | 1 cut(s) | 630 |