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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 134 |
| AclWI | GGATC | 3 cut(s) | 290, 464, 477 |
| AcoI | YGGCCR | 2 cut(s) | 145, 192 |
| AcvI | CACGTG | 1 cut(s) | 81 |
| AfaI | GTAC | 2 cut(s) | 222, 313 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 339 |
| AgsI | TTSAA | 3 cut(s) | 35, 153, 259 |
| AhlI | ACTAGT | 1 cut(s) | 223 |
| AluBI | AGCT | 1 cut(s) | 240 |
| AluI | AGCT | 1 cut(s) | 240 |
| Alw21I | GWGCWC | 3 cut(s) | 80, 418, 462 |
| Alw26I | GTCTC | 1 cut(s) | 96 |
| Alw44I | GTGCAC | 2 cut(s) | 76, 458 |
| AlwI | GGATC | 3 cut(s) | 290, 464, 477 |
| AoxI | GGCC | 2 cut(s) | 145, 192 |
| ApaLI | GTGCAC | 2 cut(s) | 76, 458 |
| ApeKI | GCWGC | 1 cut(s) | 131 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 92 |
| AspS9I | GGNCC | 1 cut(s) | 136 |
| AsuHPI | GGTGA | 1 cut(s) | 103 |
| AvaII | GGWCC | 1 cut(s) | 136 |
| BaeGI | GKGCMC | 2 cut(s) | 80, 462 |
| BalI | TGGCCA | 1 cut(s) | 194 |
| BamHI | GGATCC | 1 cut(s) | 469 |
| BanII | GRGCYC | 1 cut(s) | 346 |
| BbrPI | CACGTG | 1 cut(s) | 81 |
| BbsI | GAAGAC | 1 cut(s) | 33 |
| Bbv12I | GWGCWC | 3 cut(s) | 80, 418, 462 |
| BbvI | GCAGC | 1 cut(s) | 118 |
| BccI | CCATC | 2 cut(s) | 122, 265 |
| BceAI | ACGGC | 1 cut(s) | 132 |
| BclI | TGATCA | 1 cut(s) | 301 |
| BcoDI | GTCTC | 1 cut(s) | 96 |
| BcuI | ACTAGT | 1 cut(s) | 223 |
| BfaI | CTAG | 3 cut(s) | 203, 224, 267 |
| BisI | GCNGC | 1 cut(s) | 132 |
| BlsI | GCNGC | 1 cut(s) | 133 |
| Bme18I | GGWCC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 1 cut(s) | 471 |
| BmrI | ACTGGG | 1 cut(s) | 504 |
| BmuI | ACTGGG | 1 cut(s) | 504 |
| BpiI | GAAGAC | 1 cut(s) | 33 |
| BsaAI | YACGTR | 1 cut(s) | 81 |
| BsaBI | GATNNNNATC | 1 cut(s) | 300 |
| BsaJI | CCNNGG | 1 cut(s) | 189 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 339 |
| Bse1I | ACTGG | 2 cut(s) | 313, 499 |
| Bse8I | GATNNNNATC | 1 cut(s) | 300 |
| BseDI | CCNNGG | 1 cut(s) | 189 |
| BseGI | GGATG | 4 cut(s) | 114, 276, 326, 429 |
| BseJI | GATNNNNATC | 1 cut(s) | 300 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 339 |
| BseMII | CTCAG | 1 cut(s) | 423 |
| BseNI | ACTGG | 2 cut(s) | 313, 499 |
| BseSI | GKGCMC | 2 cut(s) | 80, 462 |
| BseX3I | CGGCCG | 1 cut(s) | 145 |
| BseXI | GCAGC | 1 cut(s) | 118 |
| Bsh1285I | CGRYCG | 1 cut(s) | 148 |
| BshFI | GGCC | 2 cut(s) | 147, 194 |
| BsiEI | CGRYCG | 1 cut(s) | 148 |
| BsiHKAI | GWGCWC | 3 cut(s) | 80, 418, 462 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 339 |
| BsmAI | GTCTC | 1 cut(s) | 96 |
| BsmBI | CGTCTC | 1 cut(s) | 96 |
| BsnI | GGCC | 2 cut(s) | 147, 194 |
| Bsp1286I | GDGCHC | 4 cut(s) | 80, 346, 418, 462 |
| Bsp143I | GATC | 5 cut(s) | 178, 295, 301, 358, 469 |
| Bsp19I | CCATGG | 1 cut(s) | 189 |
| BspACI | CCGC | 1 cut(s) | 134 |
| BspANI | GGCC | 2 cut(s) | 147, 194 |
| BspCNI | CTCAG | 1 cut(s) | 422 |
| BspHI | TCATGA | 1 cut(s) | 247 |
| BspLI | GGNNCC | 1 cut(s) | 471 |
| BspPI | GGATC | 3 cut(s) | 290, 464, 477 |
| BsrI | ACTGG | 2 cut(s) | 313, 499 |
| BssECI | CCNNGG | 1 cut(s) | 189 |
| BssMI | GATC | 5 cut(s) | 178, 295, 301, 358, 469 |
| BssT1I | CCWWGG | 1 cut(s) | 189 |
| BstBAI | YACGTR | 1 cut(s) | 81 |
| BstDEI | CTNAG | 2 cut(s) | 98, 409 |
| BstDSI | CCRYGG | 1 cut(s) | 189 |
| BstEII | GGTNACC | 1 cut(s) | 109 |
| BstF5I | GGATG | 4 cut(s) | 114, 276, 326, 429 |
| BstKTI | GATC | 5 cut(s) | 181, 298, 304, 361, 472 |
| BstMAI | GTCTC | 1 cut(s) | 96 |
| BstMBI | GATC | 5 cut(s) | 178, 295, 301, 358, 469 |
| BstMCI | CGRYCG | 1 cut(s) | 148 |
| BstPI | GGTNACC | 1 cut(s) | 109 |
| BstSLI | GKGCMC | 2 cut(s) | 80, 462 |
| BstV1I | GCAGC | 1 cut(s) | 118 |
| BstV2I | GAAGAC | 1 cut(s) | 33 |
| BstX2I | RGATCY | 1 cut(s) | 469 |
| BstYI | RGATCY | 1 cut(s) | 469 |
| BstZI | CGGCCG | 1 cut(s) | 145 |
| BsuRI | GGCC | 2 cut(s) | 147, 194 |
| BtgI | CCRYGG | 1 cut(s) | 189 |
| BtsCI | GGATG | 4 cut(s) | 114, 276, 326, 429 |
| BtsIMutI | CAGTG | 1 cut(s) | 333 |
| CciI | TCATGA | 1 cut(s) | 247 |
| Cfr13I | GGNCC | 1 cut(s) | 136 |
| Csp6I | GTAC | 2 cut(s) | 221, 312 |
| CviAII | CATG | 4 cut(s) | 190, 235, 248, 466 |
| CviJI | RGCY | 4 cut(s) | 147, 194, 240, 344 |
| CviKI_1 | RGCY | 4 cut(s) | 147, 194, 240, 344 |
| CviQI | GTAC | 2 cut(s) | 221, 312 |
| DdeI | CTNAG | 2 cut(s) | 98, 409 |
| DpnI | GATC | 5 cut(s) | 180, 297, 303, 360, 471 |
| DpnII | GATC | 5 cut(s) | 178, 295, 301, 358, 469 |
| EaeI | YGGCCR | 2 cut(s) | 145, 192 |
| EagI | CGGCCG | 1 cut(s) | 145 |
| EclXI | CGGCCG | 1 cut(s) | 145 |
| Eco130I | CCWWGG | 1 cut(s) | 189 |
| Eco24I | GRGCYC | 1 cut(s) | 346 |
| Eco47I | GGWCC | 1 cut(s) | 136 |
| Eco52I | CGGCCG | 1 cut(s) | 145 |
| Eco72I | CACGTG | 1 cut(s) | 81 |
| Eco91I | GGTNACC | 1 cut(s) | 109 |
| EcoO65I | GGTNACC | 1 cut(s) | 109 |
| EcoT14I | CCWWGG | 1 cut(s) | 189 |
| EcoT38I | GRGCYC | 1 cut(s) | 346 |
| ErhI | CCWWGG | 1 cut(s) | 189 |
| Esp3I | CGTCTC | 1 cut(s) | 96 |
| FaeI | CATG | 4 cut(s) | 193, 238, 251, 469 |
| FaiI | YATR | 9 cut(s) | 186, 191, 236, 249, 281, 366, 403, 405, 467 |
| FatI | CATG | 4 cut(s) | 189, 234, 247, 465 |
| FbaI | TGATCA | 1 cut(s) | 301 |
| Fnu4HI | GCNGC | 1 cut(s) | 132 |
| FokI | GGATG | 4 cut(s) | 101, 283, 333, 436 |
| FriOI | GRGCYC | 1 cut(s) | 346 |
| Fsp4HI | GCNGC | 1 cut(s) | 132 |
| FspBI | CTAG | 3 cut(s) | 203, 224, 267 |
| GluI | GCNGC | 1 cut(s) | 132 |
| HaeIII | GGCC | 2 cut(s) | 147, 194 |
| Hin1II | CATG | 4 cut(s) | 193, 238, 251, 469 |
| HincII | GTYRAC | 2 cut(s) | 429, 517 |
| HindII | GTYRAC | 2 cut(s) | 429, 517 |
| HinfI | GANTC | 2 cut(s) | 49, 486 |
| HphI | GGTGA | 1 cut(s) | 103 |
| Hpy166II | GTNNAC | 7 cut(s) | 78, 221, 314, 429, 439, 460, 517 |
| Hpy188I | TCNGA | 2 cut(s) | 306, 358 |
| Hpy188III | TCNNGA | 3 cut(s) | 248, 256, 299 |
| Hpy8I | GTNNAC | 7 cut(s) | 78, 221, 314, 429, 439, 460, 517 |
| HpyAV | CCTTC | 1 cut(s) | 254 |
| HpyCH4IV | ACGT | 1 cut(s) | 80 |
| HpyCH4V | TGCA | 2 cut(s) | 78, 460 |
| HpyF3I | CTNAG | 2 cut(s) | 98, 409 |
| HpySE526I | ACGT | 1 cut(s) | 80 |
| Hsp92II | CATG | 4 cut(s) | 193, 238, 251, 469 |
| Ksp22I | TGATCA | 1 cut(s) | 301 |
| Kzo9I | GATC | 5 cut(s) | 178, 295, 301, 358, 469 |
| LpnPI | CCDG | 4 cut(s) | 294, 312, 396, 480 |
| Lsp1109I | GCAGC | 1 cut(s) | 118 |
| MaeI | CTAG | 3 cut(s) | 203, 224, 267 |
| MaeII | ACGT | 1 cut(s) | 80 |
| MaeIII | GTNAC | 1 cut(s) | 109 |
| MalI | GATC | 5 cut(s) | 180, 297, 303, 360, 471 |
| MboI | GATC | 5 cut(s) | 178, 295, 301, 358, 469 |
| MboII | GAAGA | 3 cut(s) | 38, 271, 461 |
| MflI | RGATCY | 1 cut(s) | 469 |
| MhlI | GDGCHC | 4 cut(s) | 80, 346, 418, 462 |
| MlsI | TGGCCA | 1 cut(s) | 194 |
| MluCI | AATT | 1 cut(s) | 91 |
| MluNI | TGGCCA | 1 cut(s) | 194 |
| MlyI | GAGTC | 1 cut(s) | 480 |
| MnlI | CCTC | 1 cut(s) | 369 |
| Mox20I | TGGCCA | 1 cut(s) | 194 |
| MroXI | GAANNNNTTC | 1 cut(s) | 92 |
| MscI | TGGCCA | 1 cut(s) | 194 |
| MseI | TTAA | 2 cut(s) | 65, 477 |
| MslI | CAYNNNNRTG | 1 cut(s) | 319 |
| Msp20I | TGGCCA | 1 cut(s) | 194 |
| NcoI | CCATGG | 1 cut(s) | 189 |
| NdeII | GATC | 5 cut(s) | 178, 295, 301, 358, 469 |
| NlaIII | CATG | 4 cut(s) | 193, 238, 251, 469 |
| NlaIV | GGNNCC | 1 cut(s) | 471 |
| NmuCI | GTSAC | 1 cut(s) | 109 |
| PagI | TCATGA | 1 cut(s) | 247 |
| PdmI | GAANNNNTTC | 1 cut(s) | 92 |
| PfeI | GAWTC | 1 cut(s) | 49 |
| PflFI | GACNNNGTC | 1 cut(s) | 107 |
| PkrI | GCNGC | 1 cut(s) | 133 |
| PleI | GAGTC | 1 cut(s) | 480 |
| PmaCI | CACGTG | 1 cut(s) | 81 |
| PmlI | CACGTG | 1 cut(s) | 81 |
| PpsI | GAGTC | 1 cut(s) | 480 |
| Ppu21I | YACGTR | 1 cut(s) | 81 |
| PspCI | CACGTG | 1 cut(s) | 81 |
| PspEI | GGTNACC | 1 cut(s) | 109 |
| PspN4I | GGNNCC | 1 cut(s) | 471 |
| PspPI | GGNCC | 1 cut(s) | 136 |
| PsuI | RGATCY | 1 cut(s) | 469 |
| PsyI | GACNNNGTC | 1 cut(s) | 107 |
| RsaI | GTAC | 2 cut(s) | 222, 313 |
| RsaNI | GTAC | 2 cut(s) | 221, 312 |
| RseI | CAYNNNNRTG | 1 cut(s) | 319 |
| SaqAI | TTAA | 2 cut(s) | 65, 477 |
| SatI | GCNGC | 1 cut(s) | 132 |
| Sau3AI | GATC | 5 cut(s) | 178, 295, 301, 358, 469 |
| Sau96I | GGNCC | 1 cut(s) | 136 |
| SchI | GAGTC | 1 cut(s) | 480 |
| SduI | GDGCHC | 4 cut(s) | 80, 346, 418, 462 |
| SetI | ASST | 8 cut(s) | 33, 83, 141, 204, 242, 246, 380, 415 |
| SinI | GGWCC | 1 cut(s) | 136 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 319 |
| SpeI | ACTAGT | 1 cut(s) | 223 |
| Sse9I | AATT | 1 cut(s) | 91 |
| SsiI | CCGC | 1 cut(s) | 134 |
| SspMI | CTAG | 3 cut(s) | 203, 224, 267 |
| StyI | CCWWGG | 1 cut(s) | 189 |
| TaiI | ACGT | 1 cut(s) | 83 |
| TaqI | TCGA | 2 cut(s) | 294, 489 |
| TaqII | GACCGA | 1 cut(s) | 336 |
| TasI | AATT | 1 cut(s) | 91 |
| TatI | WGTACW | 1 cut(s) | 220 |
| TfiI | GAWTC | 1 cut(s) | 49 |
| Tru1I | TTAA | 2 cut(s) | 65, 477 |
| Tru9I | TTAA | 2 cut(s) | 65, 477 |
| TscAI | CASTG | 1 cut(s) | 340 |
| TseFI | GTSAC | 1 cut(s) | 109 |
| TseI | GCWGC | 1 cut(s) | 131 |
| Tsp45I | GTSAC | 1 cut(s) | 109 |
| TspDTI | ATGAA | 5 cut(s) | 39, 236, 264, 454, 462 |
| TspRI | CASTG | 1 cut(s) | 340 |
| Tth111I | GACNNNGTC | 1 cut(s) | 107 |
| VneI | GTGCAC | 2 cut(s) | 76, 458 |
| VpaK11BI | GGWCC | 1 cut(s) | 136 |
| XmnI | GAANNNNTTC | 1 cut(s) | 92 |
| XspI | CTAG | 3 cut(s) | 203, 224, 267 |