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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AciI | CCGC | 2 cut(s) | 442, 460 |
| AclWI | GGATC | 3 cut(s) | 198, 211, 547 |
| AfaI | GTAC | 2 cut(s) | 345, 547 |
| AgsI | TTSAA | 1 cut(s) | 112 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 426 |
| AluBI | AGCT | 4 cut(s) | 26, 35, 56, 359 |
| AluI | AGCT | 4 cut(s) | 26, 35, 56, 359 |
| Alw21I | GWGCWC | 1 cut(s) | 283 |
| AlwI | GGATC | 3 cut(s) | 198, 211, 547 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 26 |
| ApeKI | GCWGC | 8 cut(s) | 20, 23, 26, 242, 353, 356, 400, 506 |
| AseI | ATTAAT | 1 cut(s) | 477 |
| AspS9I | GGNCC | 1 cut(s) | 586 |
| AsuC2I | CCSGG | 1 cut(s) | 590 |
| AsuHPI | GGTGA | 3 cut(s) | 96, 430, 581 |
| AvaII | GGWCC | 1 cut(s) | 586 |
| AxyI | CCTNAGG | 1 cut(s) | 81 |
| BamHI | GGATCC | 1 cut(s) | 203 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| Bbv12I | GWGCWC | 1 cut(s) | 283 |
| BbvI | GCAGC | 8 cut(s) | 13, 32, 35, 229, 365, 368, 387, 493 |
| BclI | TGATCA | 1 cut(s) | 447 |
| BcnI | CCSGG | 1 cut(s) | 590 |
| BfaI | CTAG | 3 cut(s) | 276, 315, 360 |
| Bme1390I | CCNGG | 1 cut(s) | 590 |
| Bme18I | GGWCC | 1 cut(s) | 586 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 426 |
| BmgT120I | GGNCC | 1 cut(s) | 586 |
| BmiI | GGNNCC | 3 cut(s) | 6, 205, 588 |
| BmrFI | CCNGG | 1 cut(s) | 590 |
| BmsI | GCATC | 2 cut(s) | 149, 254 |
| BpuMI | CCSGG | 1 cut(s) | 590 |
| Bsa29I | ATCGAT | 1 cut(s) | 617 |
| BsaAI | YACGTR | 1 cut(s) | 545 |
| Bse118I | RCCGGY | 1 cut(s) | 94 |
| Bse21I | CCTNAGG | 1 cut(s) | 81 |
| BseCI | ATCGAT | 1 cut(s) | 617 |
| BseGI | GGATG | 5 cut(s) | 163, 245, 266, 301, 598 |
| BseXI | GCAGC | 8 cut(s) | 13, 32, 35, 229, 365, 368, 387, 493 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BshVI | ATCGAT | 1 cut(s) | 617 |
| BsiHKAI | GWGCWC | 1 cut(s) | 283 |
| BsiSI | CCGG | 2 cut(s) | 95, 590 |
| BslFI | GGGAC | 1 cut(s) | 148 |
| BsmFI | GGGAC | 1 cut(s) | 148 |
| Bsp1286I | GDGCHC | 1 cut(s) | 283 |
| Bsp143I | GATC | 3 cut(s) | 203, 447, 552 |
| BspACI | CCGC | 2 cut(s) | 442, 460 |
| BspDI | ATCGAT | 1 cut(s) | 617 |
| BspLI | GGNNCC | 3 cut(s) | 6, 205, 588 |
| BspPI | GGATC | 3 cut(s) | 198, 211, 547 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BsrFI | RCCGGY | 1 cut(s) | 94 |
| BssAI | RCCGGY | 1 cut(s) | 94 |
| BssMI | GATC | 3 cut(s) | 203, 447, 552 |
| Bst4CI | ACNGT | 1 cut(s) | 469 |
| Bst6I | CTCTTC | 3 cut(s) | 62, 167, 209 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 26 |
| BstBAI | YACGTR | 1 cut(s) | 545 |
| BstC8I | GCNNGC | 1 cut(s) | 96 |
| BstDEI | CTNAG | 4 cut(s) | 81, 126, 336, 538 |
| BstF5I | GGATG | 5 cut(s) | 163, 245, 266, 301, 598 |
| BstKTI | GATC | 3 cut(s) | 206, 450, 555 |
| BstMBI | GATC | 3 cut(s) | 203, 447, 552 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 26, 32, 406 |
| BstSCI | CCNGG | 1 cut(s) | 588 |
| BstV1I | GCAGC | 8 cut(s) | 13, 32, 35, 229, 365, 368, 387, 493 |
| BstX2I | RGATCY | 2 cut(s) | 203, 552 |
| BstYI | RGATCY | 2 cut(s) | 203, 552 |
| Bsu15I | ATCGAT | 1 cut(s) | 617 |
| Bsu36I | CCTNAGG | 1 cut(s) | 81 |
| BsuTUI | ATCGAT | 1 cut(s) | 617 |
| BtsCI | GGATG | 5 cut(s) | 163, 245, 266, 301, 598 |
| Cac8I | GCNNGC | 1 cut(s) | 96 |
| CaiI | CAGNNNCTG | 1 cut(s) | 26 |
| Cfr10I | RCCGGY | 1 cut(s) | 94 |
| Cfr13I | GGNCC | 1 cut(s) | 586 |
| ClaI | ATCGAT | 1 cut(s) | 617 |
| Csp6I | GTAC | 2 cut(s) | 344, 546 |
| CviQI | GTAC | 2 cut(s) | 344, 546 |
| DdeI | CTNAG | 4 cut(s) | 81, 126, 336, 538 |
| DpnI | GATC | 3 cut(s) | 205, 449, 554 |
| DpnII | GATC | 3 cut(s) | 203, 447, 552 |
| DriI | GACNNNNNGTC | 1 cut(s) | 426 |
| Eam1104I | CTCTTC | 3 cut(s) | 62, 167, 209 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 426 |
| EarI | CTCTTC | 3 cut(s) | 62, 167, 209 |
| Eco32I | GATATC | 1 cut(s) | 376 |
| Eco47I | GGWCC | 1 cut(s) | 586 |
| Eco81I | CCTNAGG | 1 cut(s) | 81 |
| EcoRV | GATATC | 1 cut(s) | 376 |
| FaiI | YATR | 3 cut(s) | 89, 290, 610 |
| FaqI | GGGAC | 1 cut(s) | 148 |
| FbaI | TGATCA | 1 cut(s) | 447 |
| FokI | GGATG | 5 cut(s) | 170, 232, 253, 308, 605 |
| FspBI | CTAG | 3 cut(s) | 276, 315, 360 |
| HapII | CCGG | 2 cut(s) | 95, 590 |
| HinfI | GANTC | 2 cut(s) | 427, 614 |
| HpaII | CCGG | 2 cut(s) | 95, 590 |
| HphI | GGTGA | 3 cut(s) | 96, 430, 581 |
| Hpy166II | GTNNAC | 2 cut(s) | 333, 586 |
| Hpy188I | TCNGA | 1 cut(s) | 452 |
| Hpy188III | TCNNGA | 1 cut(s) | 315 |
| Hpy8I | GTNNAC | 2 cut(s) | 333, 586 |
| HpyAV | CCTTC | 2 cut(s) | 148, 286 |
| HpyCH4III | ACNGT | 1 cut(s) | 469 |
| HpyCH4IV | ACGT | 3 cut(s) | 116, 381, 544 |
| HpyCH4V | TGCA | 4 cut(s) | 140, 245, 509, 520 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 26, 32, 406 |
| HpyF3I | CTNAG | 4 cut(s) | 81, 126, 336, 538 |
| HpySE526I | ACGT | 3 cut(s) | 116, 381, 544 |
| KroI | GCCGGC | 1 cut(s) | 94 |
| KroNI | GCCGGC | 1 cut(s) | 96 |
| Ksp22I | TGATCA | 1 cut(s) | 447 |
| Kzo9I | GATC | 3 cut(s) | 203, 447, 552 |
| LpnPI | CCDG | 5 cut(s) | 108, 186, 283, 372, 603 |
| Lsp1109I | GCAGC | 8 cut(s) | 13, 32, 35, 229, 365, 368, 387, 493 |
| LweI | GCATC | 2 cut(s) | 149, 254 |
| MaeI | CTAG | 3 cut(s) | 276, 315, 360 |
| MaeII | ACGT | 3 cut(s) | 116, 381, 544 |
| MaeIII | GTNAC | 3 cut(s) | 382, 418, 428 |
| MalI | GATC | 3 cut(s) | 205, 449, 554 |
| MboI | GATC | 3 cut(s) | 203, 447, 552 |
| MboII | GAAGA | 6 cut(s) | 79, 142, 184, 226, 268, 383 |
| MflI | RGATCY | 2 cut(s) | 203, 552 |
| MhlI | GDGCHC | 1 cut(s) | 283 |
| MluCI | AATT | 1 cut(s) | 495 |
| MlyI | GAGTC | 1 cut(s) | 436 |
| MnlI | CCTC | 7 cut(s) | 63, 168, 210, 361, 390, 404, 446 |
| MroNI | GCCGGC | 1 cut(s) | 94 |
| MseI | TTAA | 2 cut(s) | 44, 477 |
| MspA1I | CMGCKG | 1 cut(s) | 26 |
| MspI | CCGG | 2 cut(s) | 95, 590 |
| MspR9I | CCNGG | 1 cut(s) | 590 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 26, 32, 406 |
| NaeI | GCCGGC | 1 cut(s) | 96 |
| NciI | CCSGG | 1 cut(s) | 590 |
| NdeII | GATC | 3 cut(s) | 203, 447, 552 |
| NgoMIV | GCCGGC | 1 cut(s) | 94 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 205, 588 |
| NmuCI | GTSAC | 2 cut(s) | 418, 428 |
| PdiI | GCCGGC | 1 cut(s) | 96 |
| PfeI | GAWTC | 1 cut(s) | 614 |
| PflFI | GACNNNGTC | 2 cut(s) | 181, 223 |
| PleI | GAGTC | 1 cut(s) | 435 |
| PpsI | GAGTC | 1 cut(s) | 435 |
| Ppu21I | YACGTR | 1 cut(s) | 545 |
| PshBI | ATTAAT | 1 cut(s) | 477 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 205, 588 |
| PspPI | GGNCC | 1 cut(s) | 586 |
| PstNI | CAGNNNCTG | 1 cut(s) | 26 |
| PsuI | RGATCY | 2 cut(s) | 203, 552 |
| PsyI | GACNNNGTC | 2 cut(s) | 181, 223 |
| PvuII | CAGCTG | 1 cut(s) | 26 |
| RsaI | GTAC | 2 cut(s) | 345, 547 |
| RsaNI | GTAC | 2 cut(s) | 344, 546 |
| SaqAI | TTAA | 2 cut(s) | 44, 477 |
| Sau3AI | GATC | 3 cut(s) | 203, 447, 552 |
| Sau96I | GGNCC | 1 cut(s) | 586 |
| SchI | GAGTC | 1 cut(s) | 436 |
| ScrFI | CCNGG | 1 cut(s) | 590 |
| SduI | GDGCHC | 1 cut(s) | 283 |
| SetI | ASST | 9 cut(s) | 28, 37, 58, 82, 119, 361, 384, 391, 547 |
| SfaNI | GCATC | 2 cut(s) | 149, 254 |
| SinI | GGWCC | 1 cut(s) | 586 |
| Sse9I | AATT | 1 cut(s) | 495 |
| SsiI | CCGC | 2 cut(s) | 442, 460 |
| SspMI | CTAG | 3 cut(s) | 276, 315, 360 |
| StyD4I | CCNGG | 1 cut(s) | 588 |
| TaaI | ACNGT | 1 cut(s) | 469 |
| TaiI | ACGT | 3 cut(s) | 119, 384, 547 |
| TaqI | TCGA | 2 cut(s) | 283, 617 |
| TasI | AATT | 1 cut(s) | 495 |
| TatI | WGTACW | 1 cut(s) | 343 |
| TauI | GCSGC | 2 cut(s) | 445, 463 |
| TfiI | GAWTC | 1 cut(s) | 614 |
| Tru1I | TTAA | 2 cut(s) | 44, 477 |
| Tru9I | TTAA | 2 cut(s) | 44, 477 |
| TseFI | GTSAC | 2 cut(s) | 418, 428 |
| TseI | GCWGC | 8 cut(s) | 20, 23, 26, 242, 353, 356, 400, 506 |
| Tsp45I | GTSAC | 2 cut(s) | 418, 428 |
| TspDTI | ATGAA | 4 cut(s) | 65, 80, 305, 609 |
| Tth111I | GACNNNGTC | 2 cut(s) | 181, 223 |
| VpaK11BI | GGWCC | 1 cut(s) | 586 |
| VspI | ATTAAT | 1 cut(s) | 477 |
| XbaI | TCTAGA | 1 cut(s) | 314 |
| XspI | CTAG | 3 cut(s) | 276, 315, 360 |