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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 45, 665 |
| AarI | CACCTGC | 1 cut(s) | 644 |
| AatII | GACGTC | 1 cut(s) | 1326 |
| Acc36I | ACCTGC | 3 cut(s) | 273, 598, 644 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 153, 519 |
| AccI | GTMKAC | 1 cut(s) | 1108 |
| AccII | CGCG | 2 cut(s) | 1239, 1241 |
| AciI | CCGC | 1 cut(s) | 1096 |
| AclI | AACGTT | 1 cut(s) | 615 |
| AcoI | YGGCCR | 2 cut(s) | 1084, 1116 |
| AcsI | RAATTY | 1 cut(s) | 404 |
| AcyI | GRCGYC | 1 cut(s) | 1323 |
| AfaI | GTAC | 1 cut(s) | 70 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 153, 519, 596, 920, 1146 |
| AflII | CTTAAG | 1 cut(s) | 185 |
| AgeI | ACCGGT | 1 cut(s) | 1103 |
| AgsI | TTSAA | 3 cut(s) | 58, 236, 569 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 679 |
| AjnI | CCWGG | 1 cut(s) | 683 |
| Alw26I | GTCTC | 4 cut(s) | 174, 460, 1084, 1137 |
| Ama87I | CYCGRG | 1 cut(s) | 676 |
| AoxI | GGCC | 3 cut(s) | 144, 1084, 1116 |
| ApeKI | GCWGC | 2 cut(s) | 593, 1391 |
| ApoI | RAATTY | 1 cut(s) | 404 |
| AsiGI | ACCGGT | 1 cut(s) | 1103 |
| AspLEI | GCGC | 2 cut(s) | 1239, 1241 |
| AspS9I | GGNCC | 2 cut(s) | 681, 861 |
| AsuHPI | GGTGA | 7 cut(s) | 731, 1093, 1226, 1319, 1390, 1475, 1526 |
| AsuNHI | GCTAGC | 1 cut(s) | 329 |
| AvaI | CYCGRG | 1 cut(s) | 676 |
| AvaII | GGWCC | 2 cut(s) | 681, 861 |
| BbvI | GCAGC | 2 cut(s) | 580, 1378 |
| BccI | CCATC | 2 cut(s) | 252, 614 |
| BceAI | ACGGC | 1 cut(s) | 883 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 719, 753 |
| BciT130I | CCWGG | 1 cut(s) | 685 |
| BciVI | GTATCC | 2 cut(s) | 191, 791 |
| BclI | TGATCA | 1 cut(s) | 346 |
| BcoDI | GTCTC | 4 cut(s) | 174, 460, 1084, 1137 |
| BfmI | CTRYAG | 1 cut(s) | 489 |
| BfrI | CTTAAG | 1 cut(s) | 185 |
| BfuAI | ACCTGC | 3 cut(s) | 273, 598, 644 |
| BfuI | GTATCC | 2 cut(s) | 191, 791 |
| BglII | AGATCT | 1 cut(s) | 481 |
| BisI | GCNGC | 2 cut(s) | 594, 1392 |
| BlsI | GCNGC | 2 cut(s) | 595, 1393 |
| Bme1390I | CCNGG | 1 cut(s) | 685 |
| Bme18I | GGWCC | 2 cut(s) | 681, 861 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 679 |
| BmeT110I | CYCGRG | 1 cut(s) | 676 |
| BmgT120I | GGNCC | 2 cut(s) | 681, 861 |
| BmiI | GGNNCC | 3 cut(s) | 263, 682, 862 |
| BmrFI | CCNGG | 1 cut(s) | 685 |
| BmsI | GCATC | 1 cut(s) | 813 |
| BmtI | GCTAGC | 1 cut(s) | 333 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 84, 116 |
| Bpu10I | CCTNAGC | 1 cut(s) | 141 |
| BpuEI | CTTGAG | 3 cut(s) | 124, 462, 610 |
| Bsa29I | ATCGAT | 1 cut(s) | 936 |
| BsaHI | GRCGYC | 1 cut(s) | 1323 |
| BsaI | GGTCTC | 3 cut(s) | 174, 1084, 1137 |
| BsaJI | CCNNGG | 1 cut(s) | 537 |
| BsaWI | WCCGGW | 1 cut(s) | 1103 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 153, 519, 596, 920, 1146 |
| Bse118I | RCCGGY | 1 cut(s) | 1103 |
| Bse1I | ACTGG | 2 cut(s) | 282, 1374 |
| Bse3DI | GCAATG | 1 cut(s) | 312 |
| BseBI | CCWGG | 1 cut(s) | 685 |
| BseCI | ATCGAT | 1 cut(s) | 936 |
| BseDI | CCNNGG | 1 cut(s) | 537 |
| BseGI | GGATG | 2 cut(s) | 383, 676 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 153, 519, 596, 920, 1146 |
| BseMI | GCAATG | 1 cut(s) | 312 |
| BseMII | CTCAG | 1 cut(s) | 285 |
| BseNI | ACTGG | 2 cut(s) | 282, 1374 |
| BsePI | GCGCGC | 1 cut(s) | 1237 |
| BseRI | GAGGAG | 2 cut(s) | 217, 1055 |
| BseXI | GCAGC | 2 cut(s) | 580, 1378 |
| BseYI | CCCAGC | 1 cut(s) | 1233 |
| BsgI | GTGCAG | 1 cut(s) | 672 |
| Bsh1236I | CGCG | 2 cut(s) | 1239, 1241 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1108 |
| BshFI | GGCC | 3 cut(s) | 146, 1086, 1118 |
| BshTI | ACCGGT | 1 cut(s) | 1103 |
| BshVI | ATCGAT | 1 cut(s) | 936 |
| BsiEI | CGRYCG | 1 cut(s) | 1108 |
| BsiHKCI | CYCGRG | 1 cut(s) | 676 |
| BsiSI | CCGG | 8 cut(s) | 1071, 1083, 1093, 1104, 1115, 1147, 1224, 1317 |
| BslFI | GGGAC | 1 cut(s) | 874 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 153, 519, 596, 920, 1146 |
| BsmAI | GTCTC | 4 cut(s) | 174, 460, 1084, 1137 |
| BsmFI | GGGAC | 1 cut(s) | 874 |
| BsnI | GGCC | 3 cut(s) | 146, 1086, 1118 |
| Bso31I | GGTCTC | 3 cut(s) | 174, 1084, 1137 |
| BsoBI | CYCGRG | 1 cut(s) | 676 |
| Bsp143I | GATC | 4 cut(s) | 97, 337, 346, 481 |
| BspACI | CCGC | 1 cut(s) | 1096 |
| BspANI | GGCC | 3 cut(s) | 146, 1086, 1118 |
| BspCNI | CTCAG | 1 cut(s) | 286 |
| BspDI | ATCGAT | 1 cut(s) | 936 |
| BspFNI | CGCG | 2 cut(s) | 1239, 1241 |
| BspLI | GGNNCC | 3 cut(s) | 263, 682, 862 |
| BspMI | ACCTGC | 3 cut(s) | 273, 598, 644 |
| BspOI | GCTAGC | 1 cut(s) | 333 |
| BspTI | CTTAAG | 1 cut(s) | 185 |
| BspTNI | GGTCTC | 3 cut(s) | 174, 1084, 1137 |
| BsrDI | GCAATG | 1 cut(s) | 312 |
| BsrFI | RCCGGY | 1 cut(s) | 1103 |
| BsrI | ACTGG | 2 cut(s) | 282, 1374 |
| BssAI | RCCGGY | 1 cut(s) | 1103 |
| BssECI | CCNNGG | 1 cut(s) | 537 |
| BssHII | GCGCGC | 1 cut(s) | 1237 |
| BssMI | GATC | 4 cut(s) | 97, 337, 346, 481 |
| BssNI | GRCGYC | 1 cut(s) | 1323 |
| BssT1I | CCWWGG | 1 cut(s) | 537 |
| Bst2UI | CCWGG | 1 cut(s) | 685 |
| Bst4CI | ACNGT | 6 cut(s) | 439, 779, 923, 1167, 1260, 1282 |
| Bst6I | CTCTTC | 1 cut(s) | 463 |
| BstACI | GRCGYC | 1 cut(s) | 1323 |
| BstAFI | CTTAAG | 1 cut(s) | 185 |
| BstC8I | GCNNGC | 2 cut(s) | 331, 1239 |
| BstDEI | CTNAG | 3 cut(s) | 141, 294, 771 |
| BstEII | GGTNACC | 1 cut(s) | 1099 |
| BstF5I | GGATG | 2 cut(s) | 383, 676 |
| BstFNI | CGCG | 2 cut(s) | 1239, 1241 |
| BstHHI | GCGC | 2 cut(s) | 1239, 1241 |
| BstKTI | GATC | 4 cut(s) | 100, 340, 349, 484 |
| BstMAI | GTCTC | 4 cut(s) | 174, 460, 1084, 1137 |
| BstMBI | GATC | 4 cut(s) | 97, 337, 346, 481 |
| BstMCI | CGRYCG | 1 cut(s) | 1108 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 580, 650, 1296, 1495 |
| BstNI | CCWGG | 1 cut(s) | 685 |
| BstPI | GGTNACC | 1 cut(s) | 1099 |
| BstSCI | CCNGG | 1 cut(s) | 683 |
| BstSFI | CTRYAG | 1 cut(s) | 489 |
| BstUI | CGCG | 2 cut(s) | 1239, 1241 |
| BstV1I | GCAGC | 2 cut(s) | 580, 1378 |
| BstX2I | RGATCY | 1 cut(s) | 481 |
| BstYI | RGATCY | 1 cut(s) | 481 |
| Bsu15I | ATCGAT | 1 cut(s) | 936 |
| BsuI | GTATCC | 2 cut(s) | 191, 791 |
| BsuRI | GGCC | 3 cut(s) | 146, 1086, 1118 |
| BsuTUI | ATCGAT | 1 cut(s) | 936 |
| BtsCI | GGATG | 2 cut(s) | 383, 676 |
| BtsIMutI | CAGTG | 3 cut(s) | 513, 1341, 1381 |
| BveI | ACCTGC | 3 cut(s) | 273, 598, 644 |
| Cac8I | GCNNGC | 2 cut(s) | 331, 1239 |
| CfoI | GCGC | 2 cut(s) | 1239, 1241 |
| Cfr10I | RCCGGY | 1 cut(s) | 1103 |
| Cfr13I | GGNCC | 2 cut(s) | 681, 861 |
| ClaI | ATCGAT | 1 cut(s) | 936 |
| Csp6I | GTAC | 1 cut(s) | 69 |
| CspAI | ACCGGT | 1 cut(s) | 1103 |
| CviAII | CATG | 3 cut(s) | 72, 788, 812 |
| CviQI | GTAC | 1 cut(s) | 69 |
| DdeI | CTNAG | 3 cut(s) | 141, 294, 771 |
| DpnI | GATC | 4 cut(s) | 99, 339, 348, 483 |
| DpnII | GATC | 4 cut(s) | 97, 337, 346, 481 |
| DraI | TTTAAA | 1 cut(s) | 222 |
| DriI | GACNNNNNGTC | 1 cut(s) | 679 |
| EaeI | YGGCCR | 2 cut(s) | 1084, 1116 |
| Eam1104I | CTCTTC | 1 cut(s) | 463 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 679 |
| EarI | CTCTTC | 1 cut(s) | 463 |
| Eco130I | CCWWGG | 1 cut(s) | 537 |
| Eco31I | GGTCTC | 3 cut(s) | 174, 1084, 1137 |
| Eco47I | GGWCC | 2 cut(s) | 681, 861 |
| Eco88I | CYCGRG | 1 cut(s) | 676 |
| Eco91I | GGTNACC | 1 cut(s) | 1099 |
| EcoO109I | RGGNCCY | 2 cut(s) | 681, 861 |
| EcoO65I | GGTNACC | 1 cut(s) | 1099 |
| EcoRI | GAATTC | 1 cut(s) | 404 |
| EcoRII | CCWGG | 1 cut(s) | 683 |
| EcoT14I | CCWWGG | 1 cut(s) | 537 |
| ErhI | CCWWGG | 1 cut(s) | 537 |
| FaeI | CATG | 3 cut(s) | 75, 791, 815 |
| FaqI | GGGAC | 1 cut(s) | 874 |
| FatI | CATG | 3 cut(s) | 71, 787, 811 |
| FauI | CCCGC | 1 cut(s) | 1089 |
| FbaI | TGATCA | 1 cut(s) | 346 |
| FblI | GTMKAC | 1 cut(s) | 1108 |
| Fnu4HI | GCNGC | 2 cut(s) | 594, 1392 |
| FokI | GGATG | 2 cut(s) | 390, 683 |
| Fsp4HI | GCNGC | 2 cut(s) | 594, 1392 |
| GlaI | GCGC | 2 cut(s) | 1238, 1240 |
| GluI | GCNGC | 2 cut(s) | 594, 1392 |
| GsaI | CCCAGC | 1 cut(s) | 1237 |
| HaeIII | GGCC | 3 cut(s) | 146, 1086, 1118 |
| HapII | CCGG | 8 cut(s) | 1071, 1083, 1093, 1104, 1115, 1147, 1224, 1317 |
| HhaI | GCGC | 2 cut(s) | 1239, 1241 |
| Hin1I | GRCGYC | 1 cut(s) | 1323 |
| Hin1II | CATG | 3 cut(s) | 75, 791, 815 |
| Hin6I | GCGC | 2 cut(s) | 1237, 1239 |
| HinP1I | GCGC | 2 cut(s) | 1237, 1239 |
| HincII | GTYRAC | 2 cut(s) | 1047, 1109 |
| HindII | GTYRAC | 2 cut(s) | 1047, 1109 |
| HinfI | GANTC | 3 cut(s) | 425, 630, 674 |
| HpaII | CCGG | 8 cut(s) | 1071, 1083, 1093, 1104, 1115, 1147, 1224, 1317 |
| HphI | GGTGA | 7 cut(s) | 731, 1093, 1226, 1319, 1390, 1475, 1526 |
| Hpy166II | GTNNAC | 4 cut(s) | 304, 1019, 1047, 1109 |
| Hpy188I | TCNGA | 1 cut(s) | 1126 |
| Hpy188III | TCNNGA | 7 cut(s) | 103, 206, 344, 479, 627, 740, 867 |
| Hpy8I | GTNNAC | 4 cut(s) | 304, 1019, 1047, 1109 |
| Hpy99I | CGWCG | 1 cut(s) | 1325 |
| HpyAV | CCTTC | 1 cut(s) | 794 |
| HpyCH4III | ACNGT | 6 cut(s) | 439, 779, 923, 1167, 1260, 1282 |
| HpyCH4IV | ACGT | 3 cut(s) | 615, 1323, 1556 |
| HpyCH4V | TGCA | 5 cut(s) | 34, 653, 804, 811, 951 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 580, 650, 1296, 1495 |
| HpyF3I | CTNAG | 3 cut(s) | 141, 294, 771 |
| HpySE526I | ACGT | 3 cut(s) | 615, 1323, 1556 |
| Hsp92I | GRCGYC | 1 cut(s) | 1323 |
| Hsp92II | CATG | 3 cut(s) | 75, 791, 815 |
| HspAI | GCGC | 2 cut(s) | 1237, 1239 |
| Ksp22I | TGATCA | 1 cut(s) | 346 |
| Kzo9I | GATC | 4 cut(s) | 97, 337, 346, 481 |
| LmnI | GCTCC | 2 cut(s) | 92, 1420 |
| Lsp1109I | GCAGC | 2 cut(s) | 580, 1378 |
| LweI | GCATC | 1 cut(s) | 813 |
| MaeII | ACGT | 3 cut(s) | 615, 1323, 1556 |
| MalI | GATC | 4 cut(s) | 99, 339, 348, 483 |
| MboI | GATC | 4 cut(s) | 97, 337, 346, 481 |
| MboII | GAAGA | 7 cut(s) | 5, 278, 332, 359, 450, 919, 936 |
| MflI | RGATCY | 1 cut(s) | 481 |
| MlyI | GAGTC | 2 cut(s) | 639, 668 |
| MmeI | TCCRAC | 3 cut(s) | 101, 425, 825 |
| MseI | TTAA | 7 cut(s) | 116, 186, 201, 221, 585, 726, 1274 |
| MspCI | CTTAAG | 1 cut(s) | 185 |
| MspI | CCGG | 8 cut(s) | 1071, 1083, 1093, 1104, 1115, 1147, 1224, 1317 |
| MspR9I | CCNGG | 1 cut(s) | 685 |
| MvaI | CCWGG | 1 cut(s) | 685 |
| MvnI | CGCG | 2 cut(s) | 1239, 1241 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 580, 650, 1296, 1495 |
| NdeII | GATC | 4 cut(s) | 97, 337, 346, 481 |
| NheI | GCTAGC | 1 cut(s) | 329 |
| NlaIII | CATG | 3 cut(s) | 75, 791, 815 |
| NlaIV | GGNNCC | 3 cut(s) | 263, 682, 862 |
| NmuCI | GTSAC | 8 cut(s) | 1099, 1245, 1260, 1282, 1324, 1339, 1381, 1396 |
| PaqCI | CACCTGC | 1 cut(s) | 644 |
| PauI | GCGCGC | 1 cut(s) | 1237 |
| PfeI | GAWTC | 1 cut(s) | 425 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 153, 519 |
| PinAI | ACCGGT | 1 cut(s) | 1103 |
| PkrI | GCNGC | 2 cut(s) | 595, 1393 |
| PleI | GAGTC | 2 cut(s) | 638, 668 |
| PpsI | GAGTC | 2 cut(s) | 638, 668 |
| PpuMI | RGGWCCY | 2 cut(s) | 681, 861 |
| PsiI | TTATAA | 2 cut(s) | 45, 665 |
| Psp1406I | AACGTT | 1 cut(s) | 615 |
| Psp5II | RGGWCCY | 2 cut(s) | 681, 861 |
| Psp6I | CCWGG | 1 cut(s) | 683 |
| PspEI | GGTNACC | 1 cut(s) | 1099 |
| PspFI | CCCAGC | 1 cut(s) | 1233 |
| PspGI | CCWGG | 1 cut(s) | 683 |
| PspN4I | GGNNCC | 3 cut(s) | 263, 682, 862 |
| PspPI | GGNCC | 2 cut(s) | 681, 861 |
| PspPPI | RGGWCCY | 2 cut(s) | 681, 861 |
| PsuI | RGATCY | 1 cut(s) | 481 |
| PteI | GCGCGC | 1 cut(s) | 1237 |
| RsaI | GTAC | 1 cut(s) | 70 |
| RsaNI | GTAC | 1 cut(s) | 69 |
| SalI | GTCGAC | 1 cut(s) | 1107 |
| SaqAI | TTAA | 7 cut(s) | 116, 186, 201, 221, 585, 726, 1274 |
| SatI | GCNGC | 2 cut(s) | 594, 1392 |
| Sau3AI | GATC | 4 cut(s) | 97, 337, 346, 481 |
| Sau96I | GGNCC | 2 cut(s) | 681, 861 |
| SchI | GAGTC | 2 cut(s) | 639, 668 |
| ScrFI | CCNGG | 1 cut(s) | 685 |
| SfaNI | GCATC | 1 cut(s) | 813 |
| SfcI | CTRYAG | 1 cut(s) | 489 |
| SinI | GGWCC | 2 cut(s) | 681, 861 |
| SmlI | CTYRAG | 4 cut(s) | 103, 185, 477, 625 |
| SmoI | CTYRAG | 4 cut(s) | 103, 185, 477, 625 |
| SsiI | CCGC | 1 cut(s) | 1096 |
| StyD4I | CCNGG | 1 cut(s) | 683 |
| StyI | CCWWGG | 1 cut(s) | 537 |
| TaaI | ACNGT | 6 cut(s) | 439, 779, 923, 1167, 1260, 1282 |
| TaiI | ACGT | 3 cut(s) | 618, 1326, 1559 |
| TaqI | TCGA | 2 cut(s) | 936, 1108 |
| TatI | WGTACW | 1 cut(s) | 68 |
| TfiI | GAWTC | 1 cut(s) | 425 |
| Tru1I | TTAA | 7 cut(s) | 116, 186, 201, 221, 585, 726, 1274 |
| Tru9I | TTAA | 7 cut(s) | 116, 186, 201, 221, 585, 726, 1274 |
| TscAI | CASTG | 3 cut(s) | 520, 1348, 1381 |
| TseFI | GTSAC | 8 cut(s) | 1099, 1245, 1260, 1282, 1324, 1339, 1381, 1396 |
| TseI | GCWGC | 2 cut(s) | 593, 1391 |
| Tsp45I | GTSAC | 8 cut(s) | 1099, 1245, 1260, 1282, 1324, 1339, 1381, 1396 |
| TspDTI | ATGAA | 4 cut(s) | 5, 17, 725, 776 |
| TspRI | CASTG | 3 cut(s) | 520, 1348, 1381 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 153, 519 |
| Vha464I | CTTAAG | 1 cut(s) | 185 |
| VpaK11BI | GGWCC | 2 cut(s) | 681, 861 |
| XapI | RAATTY | 1 cut(s) | 404 |
| XbaI | TCTAGA | 1 cut(s) | 866 |
| XmiI | GTMKAC | 1 cut(s) | 1108 |
| ZraI | GACGTC | 1 cut(s) | 1324 |