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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 201, 1148 |
| Acc36I | ACCTGC | 1 cut(s) | 795 |
| AccIII | TCCGGA | 1 cut(s) | 979 |
| AciI | CCGC | 1 cut(s) | 809 |
| AclWI | GGATC | 1 cut(s) | 174 |
| AcsI | RAATTY | 1 cut(s) | 301 |
| AcuI | CTGAAG | 2 cut(s) | 345, 901 |
| AfaI | GTAC | 1 cut(s) | 655 |
| AflII | CTTAAG | 1 cut(s) | 812 |
| AgsI | TTSAA | 5 cut(s) | 124, 341, 503, 847, 1156 |
| AjnI | CCWGG | 1 cut(s) | 1122 |
| AluBI | AGCT | 2 cut(s) | 49, 955 |
| AluI | AGCT | 2 cut(s) | 49, 955 |
| Alw21I | GWGCWC | 1 cut(s) | 827 |
| Alw26I | GTCTC | 1 cut(s) | 669 |
| AlwI | GGATC | 1 cut(s) | 174 |
| Aor13HI | TCCGGA | 1 cut(s) | 979 |
| AoxI | GGCC | 1 cut(s) | 668 |
| ApoI | RAATTY | 1 cut(s) | 301 |
| AsuHPI | GGTGA | 3 cut(s) | 406, 568, 1004 |
| AxyI | CCTNAGG | 1 cut(s) | 874 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 645, 678 |
| Bbv12I | GWGCWC | 1 cut(s) | 827 |
| BbvCI | CCTCAGC | 2 cut(s) | 390, 552 |
| BccI | CCATC | 5 cut(s) | 341, 503, 845, 920, 982 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 68, 102 |
| BciT130I | CCWGG | 1 cut(s) | 1124 |
| BciVI | GTATCC | 1 cut(s) | 739 |
| BcoDI | GTCTC | 1 cut(s) | 669 |
| BfaI | CTAG | 5 cut(s) | 50, 56, 357, 672, 1165 |
| BfmI | CTRYAG | 1 cut(s) | 693 |
| BfrI | CTTAAG | 1 cut(s) | 812 |
| BfuAI | ACCTGC | 1 cut(s) | 795 |
| BfuI | GTATCC | 1 cut(s) | 739 |
| Bme1390I | CCNGG | 1 cut(s) | 1124 |
| BmiI | GGNNCC | 3 cut(s) | 225, 331, 493 |
| BmrFI | CCNGG | 1 cut(s) | 1124 |
| BmrI | ACTGGG | 1 cut(s) | 688 |
| BmsI | GCATC | 4 cut(s) | 6, 472, 634, 691 |
| BmuI | ACTGGG | 1 cut(s) | 688 |
| Bpu10I | CCTNAGC | 2 cut(s) | 390, 552 |
| BpuEI | CTTGAG | 1 cut(s) | 53 |
| BsaJI | CCNNGG | 2 cut(s) | 373, 535 |
| BsaWI | WCCGGW | 1 cut(s) | 979 |
| Bse1I | ACTGG | 4 cut(s) | 277, 493, 655, 683 |
| Bse21I | CCTNAGG | 1 cut(s) | 874 |
| BseAI | TCCGGA | 1 cut(s) | 979 |
| BseBI | CCWGG | 1 cut(s) | 1124 |
| BseDI | CCNNGG | 2 cut(s) | 373, 535 |
| BseGI | GGATG | 5 cut(s) | 21, 352, 514, 856, 931 |
| BseMII | CTCAG | 2 cut(s) | 381, 543 |
| BseNI | ACTGG | 4 cut(s) | 277, 493, 655, 683 |
| BseRI | GAGGAG | 1 cut(s) | 745 |
| BshFI | GGCC | 1 cut(s) | 670 |
| BsiHKAI | GWGCWC | 1 cut(s) | 827 |
| BsiSI | CCGG | 1 cut(s) | 980 |
| BsmAI | GTCTC | 1 cut(s) | 669 |
| BsmI | GAATGC | 1 cut(s) | 975 |
| BsnI | GGCC | 1 cut(s) | 670 |
| Bsp1286I | GDGCHC | 1 cut(s) | 827 |
| Bsp13I | TCCGGA | 1 cut(s) | 979 |
| Bsp143I | GATC | 4 cut(s) | 32, 166, 411, 573 |
| Bsp19I | CCATGG | 2 cut(s) | 373, 535 |
| BspACI | CCGC | 1 cut(s) | 809 |
| BspANI | GGCC | 1 cut(s) | 670 |
| BspCNI | CTCAG | 2 cut(s) | 382, 544 |
| BspEI | TCCGGA | 1 cut(s) | 979 |
| BspHI | TCATGA | 2 cut(s) | 769, 936 |
| BspLI | GGNNCC | 3 cut(s) | 225, 331, 493 |
| BspMI | ACCTGC | 1 cut(s) | 795 |
| BspPI | GGATC | 1 cut(s) | 174 |
| BspTI | CTTAAG | 1 cut(s) | 812 |
| BsrI | ACTGG | 4 cut(s) | 277, 493, 655, 683 |
| BssECI | CCNNGG | 2 cut(s) | 373, 535 |
| BssMI | GATC | 4 cut(s) | 32, 166, 411, 573 |
| BssT1I | CCWWGG | 2 cut(s) | 373, 535 |
| Bst2UI | CCWGG | 1 cut(s) | 1124 |
| Bst4CI | ACNGT | 2 cut(s) | 694, 968 |
| BstAFI | CTTAAG | 1 cut(s) | 812 |
| BstC8I | GCNNGC | 3 cut(s) | 21, 362, 524 |
| BstDEI | CTNAG | 4 cut(s) | 390, 552, 874, 1068 |
| BstDSI | CCRYGG | 2 cut(s) | 373, 535 |
| BstF5I | GGATG | 5 cut(s) | 21, 352, 514, 856, 931 |
| BstKTI | GATC | 4 cut(s) | 35, 169, 414, 576 |
| BstMAI | GTCTC | 1 cut(s) | 669 |
| BstMBI | GATC | 4 cut(s) | 32, 166, 411, 573 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 715, 808, 1133 |
| BstNI | CCWGG | 1 cut(s) | 1124 |
| BstNSI | RCATGY | 2 cut(s) | 23, 660 |
| BstSCI | CCNGG | 1 cut(s) | 1122 |
| BstSFI | CTRYAG | 1 cut(s) | 693 |
| Bsu36I | CCTNAGG | 1 cut(s) | 874 |
| BsuI | GTATCC | 1 cut(s) | 739 |
| BsuRI | GGCC | 1 cut(s) | 670 |
| BtgI | CCRYGG | 2 cut(s) | 373, 535 |
| BtgZI | GCGATG | 2 cut(s) | 495, 657 |
| BtsCI | GGATG | 5 cut(s) | 21, 352, 514, 856, 931 |
| BtsIMutI | CAGTG | 1 cut(s) | 690 |
| BveI | ACCTGC | 1 cut(s) | 795 |
| Cac8I | GCNNGC | 3 cut(s) | 21, 362, 524 |
| CciI | TCATGA | 2 cut(s) | 769, 936 |
| Csp6I | GTAC | 1 cut(s) | 654 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 780, 815 |
| CviJI | RGCY | 7 cut(s) | 49, 323, 389, 551, 670, 833, 955 |
| CviKI_1 | RGCY | 7 cut(s) | 49, 323, 389, 551, 670, 833, 955 |
| CviQI | GTAC | 1 cut(s) | 654 |
| DdeI | CTNAG | 4 cut(s) | 390, 552, 874, 1068 |
| DpnI | GATC | 4 cut(s) | 34, 168, 413, 575 |
| DpnII | GATC | 4 cut(s) | 32, 166, 411, 573 |
| Eco130I | CCWWGG | 2 cut(s) | 373, 535 |
| Eco32I | GATATC | 1 cut(s) | 896 |
| Eco57I | CTGAAG | 2 cut(s) | 345, 901 |
| Eco81I | CCTNAGG | 1 cut(s) | 874 |
| EcoRII | CCWGG | 1 cut(s) | 1122 |
| EcoRV | GATATC | 1 cut(s) | 896 |
| EcoT14I | CCWWGG | 2 cut(s) | 373, 535 |
| EcoT22I | ATGCAT | 2 cut(s) | 21, 1023 |
| ErhI | CCWWGG | 2 cut(s) | 373, 535 |
| FokI | GGATG | 5 cut(s) | 28, 359, 521, 863, 938 |
| FspBI | CTAG | 5 cut(s) | 50, 56, 357, 672, 1165 |
| HaeIII | GGCC | 1 cut(s) | 670 |
| HapII | CCGG | 1 cut(s) | 980 |
| HinfI | GANTC | 5 cut(s) | 80, 353, 466, 515, 628 |
| HpaII | CCGG | 1 cut(s) | 980 |
| HphI | GGTGA | 3 cut(s) | 406, 568, 1004 |
| Hpy166II | GTNNAC | 1 cut(s) | 290 |
| Hpy188I | TCNGA | 4 cut(s) | 404, 566, 893, 920 |
| Hpy188III | TCNNGA | 3 cut(s) | 770, 937, 980 |
| Hpy8I | GTNNAC | 1 cut(s) | 290 |
| HpyAV | CCTTC | 5 cut(s) | 320, 736, 841, 915, 943 |
| HpyCH4III | ACNGT | 2 cut(s) | 694, 968 |
| HpyCH4V | TGCA | 5 cut(s) | 19, 485, 647, 704, 1021 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 715, 808, 1133 |
| HpyF3I | CTNAG | 4 cut(s) | 390, 552, 874, 1068 |
| Kpn2I | TCCGGA | 1 cut(s) | 979 |
| Kzo9I | GATC | 4 cut(s) | 32, 166, 411, 573 |
| LmnI | GCTCC | 2 cut(s) | 952, 982 |
| LweI | GCATC | 4 cut(s) | 6, 472, 634, 691 |
| MaeI | CTAG | 5 cut(s) | 50, 56, 357, 672, 1165 |
| MaeIII | GTNAC | 2 cut(s) | 131, 856 |
| MalI | GATC | 4 cut(s) | 34, 168, 413, 575 |
| MboI | GATC | 4 cut(s) | 32, 166, 411, 573 |
| MboII | GAAGA | 2 cut(s) | 42, 907 |
| MhlI | GDGCHC | 1 cut(s) | 827 |
| MluCI | AATT | 6 cut(s) | 301, 447, 609, 723, 796, 884 |
| MlyI | GAGTC | 3 cut(s) | 89, 362, 524 |
| MmeI | TCCRAC | 2 cut(s) | 133, 288 |
| Mph1103I | ATGCAT | 2 cut(s) | 21, 1023 |
| MroI | TCCGGA | 1 cut(s) | 979 |
| MseI | TTAA | 5 cut(s) | 162, 189, 456, 618, 813 |
| MslI | CAYNNNNRTG | 2 cut(s) | 341, 503 |
| MspCI | CTTAAG | 1 cut(s) | 812 |
| MspI | CCGG | 1 cut(s) | 980 |
| MspR9I | CCNGG | 1 cut(s) | 1124 |
| Mva1269I | GAATGC | 1 cut(s) | 975 |
| MvaI | CCWGG | 1 cut(s) | 1124 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 715, 808, 1133 |
| NcoI | CCATGG | 2 cut(s) | 373, 535 |
| NdeII | GATC | 4 cut(s) | 32, 166, 411, 573 |
| NlaIV | GGNNCC | 3 cut(s) | 225, 331, 493 |
| NmeAIII | GCCGAG | 1 cut(s) | 103 |
| NsiI | ATGCAT | 2 cut(s) | 21, 1023 |
| NspI | RCATGY | 2 cut(s) | 23, 660 |
| PaeI | GCATGC | 1 cut(s) | 23 |
| PagI | TCATGA | 2 cut(s) | 769, 936 |
| PctI | GAATGC | 1 cut(s) | 975 |
| PfeI | GAWTC | 2 cut(s) | 466, 628 |
| PleI | GAGTC | 3 cut(s) | 88, 361, 523 |
| PpsI | GAGTC | 3 cut(s) | 88, 361, 523 |
| PsiI | TTATAA | 2 cut(s) | 201, 1148 |
| Psp6I | CCWGG | 1 cut(s) | 1122 |
| PspGI | CCWGG | 1 cut(s) | 1122 |
| PspN4I | GGNNCC | 3 cut(s) | 225, 331, 493 |
| RsaI | GTAC | 1 cut(s) | 655 |
| RsaNI | GTAC | 1 cut(s) | 654 |
| RseI | CAYNNNNRTG | 2 cut(s) | 341, 503 |
| SaqAI | TTAA | 5 cut(s) | 162, 189, 456, 618, 813 |
| Sau3AI | GATC | 4 cut(s) | 32, 166, 411, 573 |
| SchI | GAGTC | 3 cut(s) | 89, 362, 524 |
| ScrFI | CCNGG | 1 cut(s) | 1124 |
| SduI | GDGCHC | 1 cut(s) | 827 |
| SetI | ASST | 7 cut(s) | 51, 215, 229, 286, 789, 875, 957 |
| SfaNI | GCATC | 4 cut(s) | 6, 472, 634, 691 |
| SfcI | CTRYAG | 1 cut(s) | 693 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 341, 503 |
| SmlI | CTYRAG | 2 cut(s) | 68, 812 |
| SmoI | CTYRAG | 2 cut(s) | 68, 812 |
| SphI | GCATGC | 1 cut(s) | 23 |
| Sse9I | AATT | 6 cut(s) | 301, 447, 609, 723, 796, 884 |
| SsiI | CCGC | 1 cut(s) | 809 |
| SspI | AATATT | 1 cut(s) | 271 |
| SspMI | CTAG | 5 cut(s) | 50, 56, 357, 672, 1165 |
| StyD4I | CCNGG | 1 cut(s) | 1122 |
| StyI | CCWWGG | 2 cut(s) | 373, 535 |
| TaaI | ACNGT | 2 cut(s) | 694, 968 |
| TaqI | TCGA | 2 cut(s) | 410, 572 |
| TasI | AATT | 6 cut(s) | 301, 447, 609, 723, 796, 884 |
| TfiI | GAWTC | 2 cut(s) | 466, 628 |
| Tru1I | TTAA | 5 cut(s) | 162, 189, 456, 618, 813 |
| Tru9I | TTAA | 5 cut(s) | 162, 189, 456, 618, 813 |
| TscAI | CASTG | 1 cut(s) | 697 |
| TspDTI | ATGAA | 3 cut(s) | 257, 294, 962 |
| TspGWI | ACGGA | 3 cut(s) | 152, 372, 534 |
| TspRI | CASTG | 1 cut(s) | 697 |
| Vha464I | CTTAAG | 1 cut(s) | 812 |
| XapI | RAATTY | 1 cut(s) | 301 |
| XceI | RCATGY | 2 cut(s) | 23, 660 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 340, 502 |
| XspI | CTAG | 5 cut(s) | 50, 56, 357, 672, 1165 |
| Zsp2I | ATGCAT | 2 cut(s) | 21, 1023 |