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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 148 |
| AgeI | ACCGGT | 1 cut(s) | 197 |
| AluBI | AGCT | 1 cut(s) | 21 |
| AluI | AGCT | 1 cut(s) | 21 |
| Alw26I | GTCTC | 1 cut(s) | 96 |
| AoxI | GGCC | 2 cut(s) | 134, 148 |
| AsiGI | ACCGGT | 1 cut(s) | 197 |
| AspS9I | GGNCC | 2 cut(s) | 163, 200 |
| AsuC2I | CCSGG | 1 cut(s) | 171 |
| AsuHPI | GGTGA | 1 cut(s) | 79 |
| AvaII | GGWCC | 2 cut(s) | 163, 200 |
| BccI | CCATC | 2 cut(s) | 17, 174 |
| BclI | TGATCA | 1 cut(s) | 121 |
| BcnI | CCSGG | 1 cut(s) | 171 |
| BcoDI | GTCTC | 1 cut(s) | 96 |
| Bme1390I | CCNGG | 1 cut(s) | 171 |
| Bme18I | GGWCC | 2 cut(s) | 163, 200 |
| BmgT120I | GGNCC | 2 cut(s) | 163, 200 |
| BmrFI | CCNGG | 1 cut(s) | 171 |
| BpuMI | CCSGG | 1 cut(s) | 171 |
| BsaWI | WCCGGW | 1 cut(s) | 197 |
| Bse118I | RCCGGY | 1 cut(s) | 197 |
| Bse1I | ACTGG | 1 cut(s) | 69 |
| BseGI | GGATG | 2 cut(s) | 78, 166 |
| BseNI | ACTGG | 1 cut(s) | 69 |
| BseRI | GAGGAG | 3 cut(s) | 98, 109, 114 |
| BshFI | GGCC | 2 cut(s) | 136, 150 |
| BshTI | ACCGGT | 1 cut(s) | 197 |
| BsiSI | CCGG | 5 cut(s) | 151, 170, 182, 198, 203 |
| BsmAI | GTCTC | 1 cut(s) | 96 |
| BsmBI | CGTCTC | 1 cut(s) | 96 |
| BsnI | GGCC | 2 cut(s) | 136, 150 |
| Bsp143I | GATC | 1 cut(s) | 121 |
| BspANI | GGCC | 2 cut(s) | 136, 150 |
| BsrFI | RCCGGY | 1 cut(s) | 197 |
| BsrI | ACTGG | 1 cut(s) | 69 |
| BssAI | RCCGGY | 1 cut(s) | 197 |
| BssMI | GATC | 1 cut(s) | 121 |
| Bst6I | CTCTTC | 1 cut(s) | 41 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 23 |
| BstC8I | GCNNGC | 1 cut(s) | 19 |
| BstF5I | GGATG | 2 cut(s) | 78, 166 |
| BstKTI | GATC | 1 cut(s) | 124 |
| BstMAI | GTCTC | 1 cut(s) | 96 |
| BstMBI | GATC | 1 cut(s) | 121 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 23, 49 |
| BstSCI | CCNGG | 1 cut(s) | 169 |
| BsuRI | GGCC | 2 cut(s) | 136, 150 |
| BtsCI | GGATG | 2 cut(s) | 78, 166 |
| Cac8I | GCNNGC | 1 cut(s) | 19 |
| Cfr10I | RCCGGY | 1 cut(s) | 197 |
| Cfr13I | GGNCC | 2 cut(s) | 163, 200 |
| CpoI | CGGWCCG | 1 cut(s) | 200 |
| CspAI | ACCGGT | 1 cut(s) | 197 |
| CspI | CGGWCCG | 1 cut(s) | 200 |
| CviAII | CATG | 1 cut(s) | 40 |
| CviJI | RGCY | 5 cut(s) | 21, 136, 150, 185, 212 |
| CviKI_1 | RGCY | 5 cut(s) | 21, 136, 150, 185, 212 |
| DpnI | GATC | 1 cut(s) | 123 |
| DpnII | GATC | 1 cut(s) | 121 |
| EaeI | YGGCCR | 1 cut(s) | 148 |
| Eam1104I | CTCTTC | 1 cut(s) | 41 |
| EarI | CTCTTC | 1 cut(s) | 41 |
| Eco147I | AGGCCT | 1 cut(s) | 136 |
| Eco47I | GGWCC | 2 cut(s) | 163, 200 |
| Esp3I | CGTCTC | 1 cut(s) | 96 |
| FaeI | CATG | 1 cut(s) | 43 |
| FaiI | YATR | 5 cut(s) | 24, 36, 41, 131, 147 |
| FatI | CATG | 1 cut(s) | 39 |
| FbaI | TGATCA | 1 cut(s) | 121 |
| FokI | GGATG | 2 cut(s) | 85, 153 |
| HaeIII | GGCC | 2 cut(s) | 136, 150 |
| HapII | CCGG | 5 cut(s) | 151, 170, 182, 198, 203 |
| Hin1II | CATG | 1 cut(s) | 43 |
| HpaII | CCGG | 5 cut(s) | 151, 170, 182, 198, 203 |
| HphI | GGTGA | 1 cut(s) | 79 |
| Hpy188I | TCNGA | 1 cut(s) | 190 |
| Hpy188III | TCNNGA | 1 cut(s) | 125 |
| HpyAV | CCTTC | 3 cut(s) | 49, 154, 202 |
| HpyCH4V | TGCA | 2 cut(s) | 17, 43 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 23, 49 |
| Hsp92II | CATG | 1 cut(s) | 43 |
| Ksp22I | TGATCA | 1 cut(s) | 121 |
| Kzo9I | GATC | 1 cut(s) | 121 |
| LpnPI | CCDG | 7 cut(s) | 12, 50, 164, 183, 195, 211, 216 |
| MalI | GATC | 1 cut(s) | 123 |
| MboI | GATC | 1 cut(s) | 121 |
| MboII | GAAGA | 3 cut(s) | 58, 166, 169 |
| MluCI | AATT | 1 cut(s) | 220 |
| MnlI | CCTC | 5 cut(s) | 42, 63, 76, 87, 92 |
| MseI | TTAA | 1 cut(s) | 223 |
| MspI | CCGG | 5 cut(s) | 151, 170, 182, 198, 203 |
| MspR9I | CCNGG | 1 cut(s) | 171 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 23, 49 |
| NciI | CCSGG | 1 cut(s) | 171 |
| NdeII | GATC | 1 cut(s) | 121 |
| NlaIII | CATG | 1 cut(s) | 43 |
| PceI | AGGCCT | 1 cut(s) | 136 |
| PfoI | TCCNGGA | 1 cut(s) | 169 |
| PinAI | ACCGGT | 1 cut(s) | 197 |
| PspPI | GGNCC | 2 cut(s) | 163, 200 |
| Rsr2I | CGGWCCG | 1 cut(s) | 200 |
| RsrII | CGGWCCG | 1 cut(s) | 200 |
| SaqAI | TTAA | 1 cut(s) | 223 |
| Sau3AI | GATC | 1 cut(s) | 121 |
| Sau96I | GGNCC | 2 cut(s) | 163, 200 |
| ScrFI | CCNGG | 1 cut(s) | 171 |
| SetI | ASST | 2 cut(s) | 23, 165 |
| SinI | GGWCC | 2 cut(s) | 163, 200 |
| Sse9I | AATT | 1 cut(s) | 220 |
| SseBI | AGGCCT | 1 cut(s) | 136 |
| StuI | AGGCCT | 1 cut(s) | 136 |
| StyD4I | CCNGG | 1 cut(s) | 169 |
| TasI | AATT | 1 cut(s) | 220 |
| Tru1I | TTAA | 1 cut(s) | 223 |
| Tru9I | TTAA | 1 cut(s) | 223 |
| TspDTI | ATGAA | 1 cut(s) | 89 |
| TspGWI | ACGGA | 1 cut(s) | 120 |
| VpaK11BI | GGWCC | 2 cut(s) | 163, 200 |