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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 133 |
| AccII | CGCG | 1 cut(s) | 196 |
| AciI | CCGC | 4 cut(s) | 59, 194, 254, 803 |
| AclWI | GGATC | 2 cut(s) | 551, 706 |
| AcoI | YGGCCR | 1 cut(s) | 510 |
| AcsI | RAATTY | 1 cut(s) | 268 |
| AcuI | CTGAAG | 2 cut(s) | 165, 589 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 183, 263 |
| AflII | CTTAAG | 2 cut(s) | 383, 500 |
| AgsI | TTSAA | 1 cut(s) | 535 |
| AjnI | CCWGG | 1 cut(s) | 236 |
| AluBI | AGCT | 2 cut(s) | 209, 475 |
| AluI | AGCT | 2 cut(s) | 209, 475 |
| Alw26I | GTCTC | 2 cut(s) | 94, 667 |
| AlwI | GGATC | 2 cut(s) | 551, 706 |
| AoxI | GGCC | 1 cut(s) | 510 |
| ApeKI | GCWGC | 3 cut(s) | 397, 475, 654 |
| ApoI | RAATTY | 1 cut(s) | 268 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 284, 314, 316, 346 |
| AspA2I | CCTAGG | 1 cut(s) | 182 |
| AspLEI | GCGC | 2 cut(s) | 708, 724 |
| AspS9I | GGNCC | 1 cut(s) | 771 |
| AsuHPI | GGTGA | 2 cut(s) | 538, 710 |
| AvaII | GGWCC | 1 cut(s) | 771 |
| AvrII | CCTAGG | 1 cut(s) | 182 |
| AxyI | CCTNAGG | 1 cut(s) | 562 |
| BalI | TGGCCA | 1 cut(s) | 512 |
| BauI | CACGAG | 1 cut(s) | 788 |
| BbvI | GCAGC | 3 cut(s) | 409, 462, 641 |
| BccI | CCATC | 6 cut(s) | 16, 533, 557, 608, 782, 800 |
| BceAI | ACGGC | 3 cut(s) | 735, 748, 823 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 37 |
| BciT130I | CCWGG | 1 cut(s) | 238 |
| BclI | TGATCA | 2 cut(s) | 454, 729 |
| BcoDI | GTCTC | 2 cut(s) | 94, 667 |
| BfaI | CTAG | 2 cut(s) | 33, 183 |
| BfmI | CTRYAG | 2 cut(s) | 39, 845 |
| BfoI | RGCGCY | 1 cut(s) | 709 |
| BfrI | CTTAAG | 2 cut(s) | 383, 500 |
| BfuAI | ACCTGC | 1 cut(s) | 133 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 170, 518 |
| BglII | AGATCT | 1 cut(s) | 35 |
| BisI | GCNGC | 3 cut(s) | 398, 476, 655 |
| BlnI | CCTAGG | 1 cut(s) | 182 |
| BlsI | GCNGC | 3 cut(s) | 399, 477, 656 |
| Bme1390I | CCNGG | 1 cut(s) | 238 |
| Bme18I | GGWCC | 1 cut(s) | 771 |
| BmgT120I | GGNCC | 1 cut(s) | 771 |
| BmiI | GGNNCC | 2 cut(s) | 6, 772 |
| BmrFI | CCNGG | 1 cut(s) | 238 |
| BmsI | GCATC | 3 cut(s) | 217, 384, 745 |
| BpuEI | CTTGAG | 1 cut(s) | 31 |
| Bsa29I | ATCGAT | 1 cut(s) | 753 |
| BsaBI | GATNNNNATC | 2 cut(s) | 453, 548 |
| BsaJI | CCNNGG | 2 cut(s) | 182, 336 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 183, 263 |
| Bse118I | RCCGGY | 1 cut(s) | 650 |
| Bse1I | ACTGG | 2 cut(s) | 306, 370 |
| Bse21I | CCTNAGG | 1 cut(s) | 562 |
| Bse8I | GATNNNNATC | 2 cut(s) | 453, 548 |
| BseBI | CCWGG | 1 cut(s) | 238 |
| BseCI | ATCGAT | 1 cut(s) | 753 |
| BseDI | CCNNGG | 2 cut(s) | 182, 336 |
| BseGI | GGATG | 7 cut(s) | 232, 332, 399, 544, 549, 619, 811 |
| BseJI | GATNNNNATC | 2 cut(s) | 453, 548 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 183, 263 |
| BseMII | CTCAG | 1 cut(s) | 227 |
| BseNI | ACTGG | 2 cut(s) | 306, 370 |
| BseRI | GAGGAG | 3 cut(s) | 433, 693, 716 |
| BseXI | GCAGC | 3 cut(s) | 409, 462, 641 |
| BsgI | GTGCAG | 1 cut(s) | 83 |
| Bsh1236I | CGCG | 1 cut(s) | 196 |
| BshFI | GGCC | 1 cut(s) | 512 |
| BshVI | ATCGAT | 1 cut(s) | 753 |
| BsiSI | CCGG | 1 cut(s) | 651 |
| BslFI | GGGAC | 1 cut(s) | 784 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 183, 263 |
| BsmAI | GTCTC | 2 cut(s) | 94, 667 |
| BsmBI | CGTCTC | 2 cut(s) | 94, 667 |
| BsmFI | GGGAC | 1 cut(s) | 784 |
| BsnI | GGCC | 1 cut(s) | 512 |
| Bsp143I | GATC | 8 cut(s) | 35, 454, 543, 687, 711, 729, 781, 792 |
| BspACI | CCGC | 4 cut(s) | 59, 194, 254, 803 |
| BspANI | GGCC | 1 cut(s) | 512 |
| BspCNI | CTCAG | 1 cut(s) | 226 |
| BspDI | ATCGAT | 1 cut(s) | 753 |
| BspFNI | CGCG | 1 cut(s) | 196 |
| BspHI | TCATGA | 1 cut(s) | 457 |
| BspLI | GGNNCC | 2 cut(s) | 6, 772 |
| BspMI | ACCTGC | 1 cut(s) | 133 |
| BspPI | GGATC | 2 cut(s) | 551, 706 |
| BspTI | CTTAAG | 2 cut(s) | 383, 500 |
| BsrFI | RCCGGY | 1 cut(s) | 650 |
| BsrI | ACTGG | 2 cut(s) | 306, 370 |
| BssAI | RCCGGY | 1 cut(s) | 650 |
| BssECI | CCNNGG | 2 cut(s) | 182, 336 |
| BssMI | GATC | 8 cut(s) | 35, 454, 543, 687, 711, 729, 781, 792 |
| BssSI | CACGAG | 1 cut(s) | 788 |
| BssT1I | CCWWGG | 1 cut(s) | 182 |
| Bst2BI | CACGAG | 1 cut(s) | 788 |
| Bst2UI | CCWGG | 1 cut(s) | 238 |
| Bst4CI | ACNGT | 2 cut(s) | 88, 698 |
| BstAFI | CTTAAG | 2 cut(s) | 383, 500 |
| BstC8I | GCNNGC | 2 cut(s) | 16, 652 |
| BstDEI | CTNAG | 2 cut(s) | 213, 562 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 181, 261 |
| BstF5I | GGATG | 7 cut(s) | 232, 332, 399, 544, 549, 619, 811 |
| BstFNI | CGCG | 1 cut(s) | 196 |
| BstH2I | RGCGCY | 1 cut(s) | 709 |
| BstHHI | GCGC | 2 cut(s) | 708, 724 |
| BstKTI | GATC | 8 cut(s) | 38, 457, 546, 690, 714, 732, 784, 795 |
| BstMAI | GTCTC | 2 cut(s) | 94, 667 |
| BstMBI | GATC | 8 cut(s) | 35, 454, 543, 687, 711, 729, 781, 792 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 11, 170, 394, 403, 518 |
| BstNI | CCWGG | 1 cut(s) | 238 |
| BstSCI | CCNGG | 1 cut(s) | 236 |
| BstSFI | CTRYAG | 2 cut(s) | 39, 845 |
| BstUI | CGCG | 1 cut(s) | 196 |
| BstV1I | GCAGC | 3 cut(s) | 409, 462, 641 |
| BstX2I | RGATCY | 2 cut(s) | 35, 711 |
| BstYI | RGATCY | 2 cut(s) | 35, 711 |
| Bsu15I | ATCGAT | 1 cut(s) | 753 |
| Bsu36I | CCTNAGG | 1 cut(s) | 562 |
| BsuRI | GGCC | 1 cut(s) | 512 |
| BsuTUI | ATCGAT | 1 cut(s) | 753 |
| BtsCI | GGATG | 7 cut(s) | 232, 332, 399, 544, 549, 619, 811 |
| BtsI | GCAGTG | 1 cut(s) | 690 |
| BtsIMutI | CAGTG | 2 cut(s) | 363, 690 |
| BveI | ACCTGC | 1 cut(s) | 133 |
| Cac8I | GCNNGC | 2 cut(s) | 16, 652 |
| CciI | TCATGA | 1 cut(s) | 457 |
| CfoI | GCGC | 2 cut(s) | 708, 724 |
| Cfr10I | RCCGGY | 1 cut(s) | 650 |
| Cfr13I | GGNCC | 1 cut(s) | 771 |
| ClaI | ATCGAT | 1 cut(s) | 753 |
| CseI | GACGC | 1 cut(s) | 219 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 468, 503 |
| CviAII | CATG | 4 cut(s) | 458, 516, 625, 634 |
| DdeI | CTNAG | 2 cut(s) | 213, 562 |
| DpnI | GATC | 8 cut(s) | 37, 456, 545, 689, 713, 731, 783, 794 |
| DpnII | GATC | 8 cut(s) | 35, 454, 543, 687, 711, 729, 781, 792 |
| EaeI | YGGCCR | 1 cut(s) | 510 |
| Eco130I | CCWWGG | 1 cut(s) | 182 |
| Eco32I | GATATC | 1 cut(s) | 584 |
| Eco47I | GGWCC | 1 cut(s) | 771 |
| Eco57I | CTGAAG | 2 cut(s) | 165, 589 |
| Eco81I | CCTNAGG | 1 cut(s) | 562 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 181, 261 |
| EcoRII | CCWGG | 1 cut(s) | 236 |
| EcoRV | GATATC | 1 cut(s) | 584 |
| EcoT14I | CCWWGG | 1 cut(s) | 182 |
| ErhI | CCWWGG | 1 cut(s) | 182 |
| Esp3I | CGTCTC | 2 cut(s) | 94, 667 |
| FaeI | CATG | 4 cut(s) | 461, 519, 628, 637 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 161, 193 |
| FaqI | GGGAC | 1 cut(s) | 784 |
| FatI | CATG | 4 cut(s) | 457, 515, 624, 633 |
| FbaI | TGATCA | 2 cut(s) | 454, 729 |
| Fnu4HI | GCNGC | 3 cut(s) | 398, 476, 655 |
| FokI | GGATG | 7 cut(s) | 239, 319, 406, 536, 551, 626, 818 |
| Fsp4HI | GCNGC | 3 cut(s) | 398, 476, 655 |
| FspBI | CTAG | 2 cut(s) | 33, 183 |
| GlaI | GCGC | 2 cut(s) | 707, 723 |
| GluI | GCNGC | 3 cut(s) | 398, 476, 655 |
| HaeII | RGCGCY | 1 cut(s) | 709 |
| HaeIII | GGCC | 1 cut(s) | 512 |
| HapII | CCGG | 1 cut(s) | 651 |
| HgaI | GACGC | 1 cut(s) | 219 |
| HhaI | GCGC | 2 cut(s) | 708, 724 |
| Hin1II | CATG | 4 cut(s) | 461, 519, 628, 637 |
| Hin6I | GCGC | 2 cut(s) | 706, 722 |
| HinP1I | GCGC | 2 cut(s) | 706, 722 |
| HinfI | GANTC | 1 cut(s) | 341 |
| HpaII | CCGG | 1 cut(s) | 651 |
| HphI | GGTGA | 2 cut(s) | 538, 710 |
| Hpy166II | GTNNAC | 1 cut(s) | 122 |
| Hpy188I | TCNGA | 4 cut(s) | 94, 337, 346, 608 |
| Hpy188III | TCNNGA | 3 cut(s) | 458, 788, 796 |
| Hpy8I | GTNNAC | 1 cut(s) | 122 |
| Hpy99I | CGWCG | 4 cut(s) | 304, 698, 838, 844 |
| HpyAV | CCTTC | 7 cut(s) | 133, 187, 271, 424, 529, 603, 631 |
| HpyCH4III | ACNGT | 2 cut(s) | 88, 698 |
| HpyCH4IV | ACGT | 3 cut(s) | 73, 360, 506 |
| HpyCH4V | TGCA | 5 cut(s) | 14, 64, 320, 397, 657 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 11, 170, 394, 403, 518 |
| HpyF3I | CTNAG | 2 cut(s) | 213, 562 |
| HpySE526I | ACGT | 3 cut(s) | 73, 360, 506 |
| Hsp92II | CATG | 4 cut(s) | 461, 519, 628, 637 |
| HspAI | GCGC | 2 cut(s) | 706, 722 |
| KroI | GCCGGC | 1 cut(s) | 650 |
| KroNI | GCCGGC | 1 cut(s) | 652 |
| Ksp22I | TGATCA | 2 cut(s) | 454, 729 |
| Kzo9I | GATC | 8 cut(s) | 35, 454, 543, 687, 711, 729, 781, 792 |
| LmnI | GCTCC | 3 cut(s) | 10, 680, 703 |
| Lsp1109I | GCAGC | 3 cut(s) | 409, 462, 641 |
| LweI | GCATC | 3 cut(s) | 217, 384, 745 |
| MaeI | CTAG | 2 cut(s) | 33, 183 |
| MaeII | ACGT | 3 cut(s) | 73, 360, 506 |
| MaeIII | GTNAC | 1 cut(s) | 361 |
| MalI | GATC | 8 cut(s) | 37, 456, 545, 689, 713, 731, 783, 794 |
| MboI | GATC | 8 cut(s) | 35, 454, 543, 687, 711, 729, 781, 792 |
| MboII | GAAGA | 3 cut(s) | 595, 776, 809 |
| MflI | RGATCY | 2 cut(s) | 35, 711 |
| MlsI | TGGCCA | 1 cut(s) | 512 |
| MluCI | AATT | 4 cut(s) | 268, 411, 484, 572 |
| MluNI | TGGCCA | 1 cut(s) | 512 |
| Mox20I | TGGCCA | 1 cut(s) | 512 |
| MroNI | GCCGGC | 1 cut(s) | 650 |
| MscI | TGGCCA | 1 cut(s) | 512 |
| MseI | TTAA | 3 cut(s) | 384, 501, 824 |
| MslI | CAYNNNNRTG | 1 cut(s) | 662 |
| Msp20I | TGGCCA | 1 cut(s) | 512 |
| MspCI | CTTAAG | 2 cut(s) | 383, 500 |
| MspI | CCGG | 1 cut(s) | 651 |
| MspR9I | CCNGG | 1 cut(s) | 238 |
| MvaI | CCWGG | 1 cut(s) | 238 |
| MvnI | CGCG | 1 cut(s) | 196 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 11, 170, 394, 403, 518 |
| NaeI | GCCGGC | 1 cut(s) | 652 |
| NdeII | GATC | 8 cut(s) | 35, 454, 543, 687, 711, 729, 781, 792 |
| NgoMIV | GCCGGC | 1 cut(s) | 650 |
| NlaIII | CATG | 4 cut(s) | 461, 519, 628, 637 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 772 |
| NmuCI | GTSAC | 1 cut(s) | 361 |
| PagI | TCATGA | 1 cut(s) | 457 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 786 |
| PdiI | GCCGGC | 1 cut(s) | 652 |
| PfeI | GAWTC | 1 cut(s) | 341 |
| PflFI | GACNNNGTC | 1 cut(s) | 746 |
| PkrI | GCNGC | 3 cut(s) | 399, 477, 656 |
| Psp6I | CCWGG | 1 cut(s) | 236 |
| PspGI | CCWGG | 1 cut(s) | 236 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 772 |
| PspPI | GGNCC | 1 cut(s) | 771 |
| PsuI | RGATCY | 2 cut(s) | 35, 711 |
| PsyI | GACNNNGTC | 1 cut(s) | 746 |
| RseI | CAYNNNNRTG | 1 cut(s) | 662 |
| SaqAI | TTAA | 3 cut(s) | 384, 501, 824 |
| SatI | GCNGC | 3 cut(s) | 398, 476, 655 |
| Sau3AI | GATC | 8 cut(s) | 35, 454, 543, 687, 711, 729, 781, 792 |
| Sau96I | GGNCC | 1 cut(s) | 771 |
| ScrFI | CCNGG | 1 cut(s) | 238 |
| SfaNI | GCATC | 3 cut(s) | 217, 384, 745 |
| SfcI | CTRYAG | 2 cut(s) | 39, 845 |
| SinI | GGWCC | 1 cut(s) | 771 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 662 |
| SmlI | CTYRAG | 3 cut(s) | 46, 383, 500 |
| SmoI | CTYRAG | 3 cut(s) | 46, 383, 500 |
| Sse9I | AATT | 4 cut(s) | 268, 411, 484, 572 |
| SsiI | CCGC | 4 cut(s) | 59, 194, 254, 803 |
| SspMI | CTAG | 2 cut(s) | 33, 183 |
| StyD4I | CCNGG | 1 cut(s) | 236 |
| StyI | CCWWGG | 1 cut(s) | 182 |
| TaaI | ACNGT | 2 cut(s) | 88, 698 |
| TaiI | ACGT | 3 cut(s) | 76, 363, 509 |
| TaqI | TCGA | 2 cut(s) | 23, 753 |
| TasI | AATT | 4 cut(s) | 268, 411, 484, 572 |
| TfiI | GAWTC | 1 cut(s) | 341 |
| Tru1I | TTAA | 3 cut(s) | 384, 501, 824 |
| Tru9I | TTAA | 3 cut(s) | 384, 501, 824 |
| TscAI | CASTG | 2 cut(s) | 370, 690 |
| TseFI | GTSAC | 1 cut(s) | 361 |
| TseI | GCWGC | 3 cut(s) | 397, 475, 654 |
| Tsp45I | GTSAC | 1 cut(s) | 361 |
| TspDTI | ATGAA | 3 cut(s) | 83, 650, 809 |
| TspRI | CASTG | 2 cut(s) | 370, 690 |
| Tth111I | GACNNNGTC | 1 cut(s) | 746 |
| Vha464I | CTTAAG | 2 cut(s) | 383, 500 |
| VpaK11BI | GGWCC | 1 cut(s) | 771 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 181, 261 |
| XapI | RAATTY | 1 cut(s) | 268 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 280 |
| XmaJI | CCTAGG | 1 cut(s) | 182 |
| XspI | CTAG | 2 cut(s) | 33, 183 |