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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 356 |
| AccI | GTMKAC | 1 cut(s) | 504 |
| AciI | CCGC | 1 cut(s) | 116 |
| AcoI | YGGCCR | 1 cut(s) | 427 |
| AcuI | CTGAAG | 1 cut(s) | 510 |
| AfaI | GTAC | 1 cut(s) | 346 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 115 |
| AgsI | TTSAA | 1 cut(s) | 304 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 171, 203 |
| AluBI | AGCT | 1 cut(s) | 264 |
| AluI | AGCT | 1 cut(s) | 264 |
| Alw26I | GTCTC | 1 cut(s) | 523 |
| AoxI | GGCC | 2 cut(s) | 129, 427 |
| ApeKI | GCWGC | 3 cut(s) | 5, 261, 264 |
| AspS9I | GGNCC | 2 cut(s) | 129, 514 |
| AvaII | GGWCC | 1 cut(s) | 514 |
| BalI | TGGCCA | 1 cut(s) | 429 |
| BanI | GGYRCC | 1 cut(s) | 356 |
| BbsI | GAAGAC | 2 cut(s) | 161, 501 |
| BbvI | GCAGC | 3 cut(s) | 17, 251, 273 |
| BccI | CCATC | 1 cut(s) | 310 |
| BcoDI | GTCTC | 1 cut(s) | 523 |
| BisI | GCNGC | 3 cut(s) | 6, 262, 265 |
| BlsI | GCNGC | 3 cut(s) | 7, 263, 266 |
| Bme18I | GGWCC | 1 cut(s) | 514 |
| BmgT120I | GGNCC | 2 cut(s) | 129, 514 |
| BmiI | GGNNCC | 2 cut(s) | 358, 516 |
| BmsI | GCATC | 3 cut(s) | 89, 276, 459 |
| BpiI | GAAGAC | 2 cut(s) | 161, 501 |
| BsaBI | GATNNNNATC | 1 cut(s) | 54 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 85, 115 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 115 |
| Bse1I | ACTGG | 2 cut(s) | 358, 470 |
| Bse3DI | GCAATG | 1 cut(s) | 83 |
| Bse8I | GATNNNNATC | 1 cut(s) | 54 |
| BseGI | GGATG | 1 cut(s) | 474 |
| BseJI | GATNNNNATC | 1 cut(s) | 54 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 115 |
| BseMI | GCAATG | 1 cut(s) | 83 |
| BseMII | CTCAG | 1 cut(s) | 468 |
| BseNI | ACTGG | 2 cut(s) | 358, 470 |
| BseRI | GAGGAG | 1 cut(s) | 541 |
| BseXI | GCAGC | 3 cut(s) | 17, 251, 273 |
| BshFI | GGCC | 2 cut(s) | 131, 429 |
| BshNI | GGYRCC | 1 cut(s) | 356 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 115 |
| BsmAI | GTCTC | 1 cut(s) | 523 |
| BsmI | GAATGC | 1 cut(s) | 385 |
| BsnI | GGCC | 2 cut(s) | 131, 429 |
| BspACI | CCGC | 1 cut(s) | 116 |
| BspANI | GGCC | 2 cut(s) | 131, 429 |
| BspCNI | CTCAG | 1 cut(s) | 467 |
| BspHI | TCATGA | 1 cut(s) | 58 |
| BspLI | GGNNCC | 2 cut(s) | 358, 516 |
| BspT107I | GGYRCC | 1 cut(s) | 356 |
| BsrDI | GCAATG | 1 cut(s) | 83 |
| BsrI | ACTGG | 2 cut(s) | 358, 470 |
| Bst4CI | ACNGT | 3 cut(s) | 344, 478, 502 |
| BstDEI | CTNAG | 1 cut(s) | 454 |
| BstF5I | GGATG | 1 cut(s) | 474 |
| BstMAI | GTCTC | 1 cut(s) | 523 |
| BstV1I | GCAGC | 3 cut(s) | 17, 251, 273 |
| BstV2I | GAAGAC | 2 cut(s) | 161, 501 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 293 |
| BsuRI | GGCC | 2 cut(s) | 131, 429 |
| BtgZI | GCGATG | 1 cut(s) | 237 |
| BtsCI | GGATG | 1 cut(s) | 474 |
| BtsIMutI | CAGTG | 2 cut(s) | 463, 498 |
| CciI | TCATGA | 1 cut(s) | 58 |
| Cfr13I | GGNCC | 2 cut(s) | 129, 514 |
| Csp6I | GTAC | 1 cut(s) | 345 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 300, 335 |
| CviAII | CATG | 4 cut(s) | 59, 76, 244, 511 |
| CviJI | RGCY | 6 cut(s) | 131, 264, 285, 401, 409, 429 |
| CviKI_1 | RGCY | 6 cut(s) | 131, 264, 285, 401, 409, 429 |
| CviQI | GTAC | 1 cut(s) | 345 |
| DdeI | CTNAG | 1 cut(s) | 454 |
| DraI | TTTAAA | 1 cut(s) | 202 |
| EaeI | YGGCCR | 1 cut(s) | 427 |
| Eco47I | GGWCC | 1 cut(s) | 514 |
| Eco57I | CTGAAG | 1 cut(s) | 510 |
| EcoT22I | ATGCAT | 1 cut(s) | 125 |
| FaeI | CATG | 4 cut(s) | 62, 79, 247, 514 |
| FatI | CATG | 4 cut(s) | 58, 75, 243, 510 |
| FauNDI | CATATG | 1 cut(s) | 125 |
| FblI | GTMKAC | 1 cut(s) | 504 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 262, 265 |
| FokI | GGATG | 1 cut(s) | 481 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 262, 265 |
| GluI | GCNGC | 3 cut(s) | 6, 262, 265 |
| HaeIII | GGCC | 2 cut(s) | 131, 429 |
| Hin1II | CATG | 4 cut(s) | 62, 79, 247, 514 |
| HincII | GTYRAC | 1 cut(s) | 562 |
| HindII | GTYRAC | 1 cut(s) | 562 |
| Hpy166II | GTNNAC | 2 cut(s) | 505, 562 |
| Hpy188I | TCNGA | 1 cut(s) | 490 |
| Hpy188III | TCNNGA | 1 cut(s) | 59 |
| Hpy8I | GTNNAC | 2 cut(s) | 505, 562 |
| HpyAV | CCTTC | 1 cut(s) | 241 |
| HpyCH4III | ACNGT | 3 cut(s) | 344, 478, 502 |
| HpyCH4V | TGCA | 4 cut(s) | 123, 168, 267, 395 |
| HpyF3I | CTNAG | 1 cut(s) | 454 |
| Hsp92II | CATG | 4 cut(s) | 62, 79, 247, 514 |
| LpnPI | CCDG | 4 cut(s) | 339, 441, 443, 451 |
| Lsp1109I | GCAGC | 3 cut(s) | 17, 251, 273 |
| LweI | GCATC | 3 cut(s) | 89, 276, 459 |
| MaeIII | GTNAC | 1 cut(s) | 461 |
| MboII | GAAGA | 9 cut(s) | 56, 59, 74, 77, 166, 316, 503, 506, 562 |
| MlsI | TGGCCA | 1 cut(s) | 429 |
| MluCI | AATT | 4 cut(s) | 159, 169, 378, 534 |
| MluNI | TGGCCA | 1 cut(s) | 429 |
| MmeI | TCCRAC | 1 cut(s) | 310 |
| MnlI | CCTC | 5 cut(s) | 11, 107, 111, 115, 519 |
| Mox20I | TGGCCA | 1 cut(s) | 429 |
| Mph1103I | ATGCAT | 1 cut(s) | 125 |
| MscI | TGGCCA | 1 cut(s) | 429 |
| MseI | TTAA | 4 cut(s) | 111, 201, 228, 521 |
| MslI | CAYNNNNRTG | 3 cut(s) | 278, 291, 390 |
| Msp20I | TGGCCA | 1 cut(s) | 429 |
| MspA1I | CMGCKG | 1 cut(s) | 264 |
| Mva1269I | GAATGC | 1 cut(s) | 385 |
| NdeI | CATATG | 1 cut(s) | 125 |
| NlaIII | CATG | 4 cut(s) | 62, 79, 247, 514 |
| NlaIV | GGNNCC | 2 cut(s) | 358, 516 |
| NmuCI | GTSAC | 1 cut(s) | 461 |
| NsiI | ATGCAT | 1 cut(s) | 125 |
| PagI | TCATGA | 1 cut(s) | 58 |
| PctI | GAATGC | 1 cut(s) | 385 |
| PflFI | GACNNNGTC | 1 cut(s) | 500 |
| PkrI | GCNGC | 3 cut(s) | 7, 263, 266 |
| PspN4I | GGNNCC | 2 cut(s) | 358, 516 |
| PspPI | GGNCC | 2 cut(s) | 129, 514 |
| PsyI | GACNNNGTC | 1 cut(s) | 500 |
| PvuII | CAGCTG | 1 cut(s) | 264 |
| RsaI | GTAC | 1 cut(s) | 346 |
| RsaNI | GTAC | 1 cut(s) | 345 |
| RseI | CAYNNNNRTG | 3 cut(s) | 278, 291, 390 |
| SaqAI | TTAA | 4 cut(s) | 111, 201, 228, 521 |
| SatI | GCNGC | 3 cut(s) | 6, 262, 265 |
| Sau96I | GGNCC | 2 cut(s) | 129, 514 |
| SetI | ASST | 3 cut(s) | 266, 291, 460 |
| SfaNI | GCATC | 3 cut(s) | 89, 276, 459 |
| SinI | GGWCC | 1 cut(s) | 514 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 278, 291, 390 |
| Sse9I | AATT | 4 cut(s) | 159, 169, 378, 534 |
| SsiI | CCGC | 1 cut(s) | 116 |
| TaaI | ACNGT | 3 cut(s) | 344, 478, 502 |
| TasI | AATT | 4 cut(s) | 159, 169, 378, 534 |
| TatI | WGTACW | 1 cut(s) | 344 |
| Tru1I | TTAA | 4 cut(s) | 111, 201, 228, 521 |
| Tru9I | TTAA | 4 cut(s) | 111, 201, 228, 521 |
| TscAI | CASTG | 2 cut(s) | 470, 505 |
| TseFI | GTSAC | 1 cut(s) | 461 |
| TseI | GCWGC | 3 cut(s) | 5, 261, 264 |
| Tsp45I | GTSAC | 1 cut(s) | 461 |
| TspDTI | ATGAA | 4 cut(s) | 75, 192, 260, 499 |
| TspRI | CASTG | 2 cut(s) | 470, 505 |
| Tth111I | GACNNNGTC | 1 cut(s) | 500 |
| VpaK11BI | GGWCC | 1 cut(s) | 514 |
| XmiI | GTMKAC | 1 cut(s) | 504 |
| Zsp2I | ATGCAT | 1 cut(s) | 125 |