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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 920 |
| AccB1I | GGYRCC | 1 cut(s) | 453 |
| AccII | CGCG | 4 cut(s) | 147, 219, 487, 500 |
| AciI | CCGC | 5 cut(s) | 147, 217, 500, 800, 997 |
| AclWI | GGATC | 2 cut(s) | 287, 300 |
| AcuI | CTGAAG | 2 cut(s) | 218, 539 |
| AcyI | GRCGYC | 1 cut(s) | 454 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 937 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 829 |
| AluBI | AGCT | 5 cut(s) | 202, 517, 846, 907, 956 |
| AluI | AGCT | 5 cut(s) | 202, 517, 846, 907, 956 |
| Alw26I | GTCTC | 1 cut(s) | 410 |
| AlwI | GGATC | 2 cut(s) | 287, 300 |
| AoxI | GGCC | 1 cut(s) | 377 |
| ApeKI | GCWGC | 4 cut(s) | 119, 202, 567, 626 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 37 |
| AseI | ATTAAT | 1 cut(s) | 944 |
| AspLEI | GCGC | 2 cut(s) | 147, 456 |
| AsuC2I | CCSGG | 1 cut(s) | 661 |
| AsuHPI | GGTGA | 4 cut(s) | 18, 206, 467, 700 |
| BamHI | GGATCC | 1 cut(s) | 292 |
| BanI | GGYRCC | 1 cut(s) | 453 |
| BanII | GRGCYC | 1 cut(s) | 932 |
| BbsI | GAAGAC | 4 cut(s) | 44, 66, 167, 593 |
| BbvI | GCAGC | 4 cut(s) | 106, 189, 554, 638 |
| BccI | CCATC | 3 cut(s) | 517, 546, 677 |
| BceAI | ACGGC | 1 cut(s) | 441 |
| BciVI | GTATCC | 1 cut(s) | 488 |
| BclI | TGATCA | 2 cut(s) | 472, 736 |
| BcnI | CCSGG | 1 cut(s) | 661 |
| BcoDI | GTCTC | 1 cut(s) | 410 |
| BfoI | RGCGCY | 1 cut(s) | 457 |
| BfuI | GTATCC | 1 cut(s) | 488 |
| BisI | GCNGC | 4 cut(s) | 120, 203, 568, 627 |
| BlsI | GCNGC | 4 cut(s) | 121, 204, 569, 628 |
| Bme1390I | CCNGG | 1 cut(s) | 661 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 829 |
| BmiI | GGNNCC | 2 cut(s) | 294, 455 |
| BmrFI | CCNGG | 1 cut(s) | 661 |
| BmsI | GCATC | 3 cut(s) | 304, 380, 537 |
| BpiI | GAAGAC | 4 cut(s) | 44, 66, 167, 593 |
| BpuEI | CTTGAG | 1 cut(s) | 191 |
| BpuMI | CCSGG | 1 cut(s) | 661 |
| BsaHI | GRCGYC | 1 cut(s) | 454 |
| BsaI | GGTCTC | 1 cut(s) | 410 |
| BsaJI | CCNNGG | 1 cut(s) | 84 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 547, 577 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 937 |
| Bse3DI | GCAATG | 1 cut(s) | 857 |
| BseDI | CCNNGG | 1 cut(s) | 84 |
| BseGI | GGATG | 5 cut(s) | 181, 188, 240, 552, 978 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 937 |
| BseMI | GCAATG | 1 cut(s) | 857 |
| BseRI | GAGGAG | 1 cut(s) | 185 |
| BseXI | GCAGC | 4 cut(s) | 106, 189, 554, 638 |
| BsgI | GTGCAG | 1 cut(s) | 548 |
| Bsh1236I | CGCG | 4 cut(s) | 147, 219, 487, 500 |
| BshFI | GGCC | 1 cut(s) | 379 |
| BshNI | GGYRCC | 1 cut(s) | 453 |
| BsiSI | CCGG | 1 cut(s) | 660 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 937 |
| BsmAI | GTCTC | 1 cut(s) | 410 |
| BsmI | GAATGC | 1 cut(s) | 7 |
| BsnI | GGCC | 1 cut(s) | 379 |
| Bso31I | GGTCTC | 1 cut(s) | 410 |
| Bsp1286I | GDGCHC | 1 cut(s) | 932 |
| Bsp143I | GATC | 4 cut(s) | 292, 472, 736, 897 |
| BspACI | CCGC | 5 cut(s) | 147, 217, 500, 800, 997 |
| BspANI | GGCC | 1 cut(s) | 379 |
| BspFNI | CGCG | 4 cut(s) | 147, 219, 487, 500 |
| BspLI | GGNNCC | 2 cut(s) | 294, 455 |
| BspPI | GGATC | 2 cut(s) | 287, 300 |
| BspQI | GCTCTTC | 2 cut(s) | 507, 920 |
| BspT107I | GGYRCC | 1 cut(s) | 453 |
| BspTNI | GGTCTC | 1 cut(s) | 410 |
| BsrDI | GCAATG | 1 cut(s) | 857 |
| BssECI | CCNNGG | 1 cut(s) | 84 |
| BssMI | GATC | 4 cut(s) | 292, 472, 736, 897 |
| BssNI | GRCGYC | 1 cut(s) | 454 |
| BssT1I | CCWWGG | 1 cut(s) | 84 |
| Bst4CI | ACNGT | 2 cut(s) | 407, 421 |
| Bst6I | CTCTTC | 3 cut(s) | 507, 810, 920 |
| BstACI | GRCGYC | 1 cut(s) | 454 |
| BstC8I | GCNNGC | 2 cut(s) | 848, 986 |
| BstDEI | CTNAG | 1 cut(s) | 950 |
| BstF5I | GGATG | 5 cut(s) | 181, 188, 240, 552, 978 |
| BstFNI | CGCG | 4 cut(s) | 147, 219, 487, 500 |
| BstH2I | RGCGCY | 1 cut(s) | 457 |
| BstHHI | GCGC | 2 cut(s) | 147, 456 |
| BstKTI | GATC | 4 cut(s) | 295, 475, 739, 900 |
| BstMAI | GTCTC | 1 cut(s) | 410 |
| BstMBI | GATC | 4 cut(s) | 292, 472, 736, 897 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 202, 208, 994 |
| BstSCI | CCNGG | 1 cut(s) | 659 |
| BstUI | CGCG | 4 cut(s) | 147, 219, 487, 500 |
| BstV1I | GCAGC | 4 cut(s) | 106, 189, 554, 638 |
| BstV2I | GAAGAC | 4 cut(s) | 44, 66, 167, 593 |
| BstX2I | RGATCY | 1 cut(s) | 292 |
| BstYI | RGATCY | 1 cut(s) | 292 |
| BsuI | GTATCC | 1 cut(s) | 488 |
| BsuRI | GGCC | 1 cut(s) | 379 |
| BtgZI | GCGATG | 1 cut(s) | 565 |
| BtsCI | GGATG | 5 cut(s) | 181, 188, 240, 552, 978 |
| Cac8I | GCNNGC | 2 cut(s) | 848, 986 |
| CfoI | GCGC | 2 cut(s) | 147, 456 |
| CseI | GACGC | 2 cut(s) | 172, 200 |
| CviAII | CATG | 2 cut(s) | 434, 993 |
| DdeI | CTNAG | 1 cut(s) | 950 |
| DinI | GGCGCC | 1 cut(s) | 455 |
| DpnI | GATC | 4 cut(s) | 294, 474, 738, 899 |
| DpnII | GATC | 4 cut(s) | 292, 472, 736, 897 |
| DriI | GACNNNNNGTC | 1 cut(s) | 829 |
| Eam1104I | CTCTTC | 3 cut(s) | 507, 810, 920 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 829 |
| EarI | CTCTTC | 3 cut(s) | 507, 810, 920 |
| Eco130I | CCWWGG | 1 cut(s) | 84 |
| Eco24I | GRGCYC | 1 cut(s) | 932 |
| Eco31I | GGTCTC | 1 cut(s) | 410 |
| Eco57I | CTGAAG | 2 cut(s) | 218, 539 |
| EcoT14I | CCWWGG | 1 cut(s) | 84 |
| EcoT38I | GRGCYC | 1 cut(s) | 932 |
| EgeI | GGCGCC | 1 cut(s) | 455 |
| EheI | GGCGCC | 1 cut(s) | 455 |
| ErhI | CCWWGG | 1 cut(s) | 84 |
| FaeI | CATG | 2 cut(s) | 437, 996 |
| FatI | CATG | 2 cut(s) | 433, 992 |
| FauI | CCCGC | 2 cut(s) | 140, 493 |
| FauNDI | CATATG | 1 cut(s) | 480 |
| FbaI | TGATCA | 2 cut(s) | 472, 736 |
| Fnu4HI | GCNGC | 4 cut(s) | 120, 203, 568, 627 |
| FokI | GGATG | 5 cut(s) | 188, 195, 247, 559, 985 |
| FriOI | GRGCYC | 1 cut(s) | 932 |
| Fsp4HI | GCNGC | 4 cut(s) | 120, 203, 568, 627 |
| GlaI | GCGC | 2 cut(s) | 146, 455 |
| GluI | GCNGC | 4 cut(s) | 120, 203, 568, 627 |
| HaeII | RGCGCY | 1 cut(s) | 457 |
| HaeIII | GGCC | 1 cut(s) | 379 |
| HapII | CCGG | 1 cut(s) | 660 |
| HgaI | GACGC | 2 cut(s) | 172, 200 |
| HhaI | GCGC | 2 cut(s) | 147, 456 |
| Hin1I | GRCGYC | 1 cut(s) | 454 |
| Hin1II | CATG | 2 cut(s) | 437, 996 |
| Hin6I | GCGC | 2 cut(s) | 145, 454 |
| HinP1I | GCGC | 2 cut(s) | 145, 454 |
| HindIII | AAGCTT | 1 cut(s) | 844 |
| HinfI | GANTC | 8 cut(s) | 95, 113, 250, 605, 667, 713, 790, 890 |
| HpaII | CCGG | 1 cut(s) | 660 |
| HphI | GGTGA | 4 cut(s) | 18, 206, 467, 700 |
| Hpy188III | TCNNGA | 1 cut(s) | 577 |
| Hpy99I | CGWCG | 1 cut(s) | 394 |
| HpyAV | CCTTC | 1 cut(s) | 880 |
| HpyCH4III | ACNGT | 2 cut(s) | 407, 421 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 202, 208, 994 |
| HpyF3I | CTNAG | 1 cut(s) | 950 |
| Hsp92I | GRCGYC | 1 cut(s) | 454 |
| Hsp92II | CATG | 2 cut(s) | 437, 996 |
| HspAI | GCGC | 2 cut(s) | 145, 454 |
| KasI | GGCGCC | 1 cut(s) | 453 |
| Ksp22I | TGATCA | 2 cut(s) | 472, 736 |
| Kzo9I | GATC | 4 cut(s) | 292, 472, 736, 897 |
| LguI | GCTCTTC | 2 cut(s) | 507, 920 |
| LpnPI | CCDG | 3 cut(s) | 152, 232, 673 |
| Lsp1109I | GCAGC | 4 cut(s) | 106, 189, 554, 638 |
| LweI | GCATC | 3 cut(s) | 304, 380, 537 |
| MaeIII | GTNAC | 4 cut(s) | 212, 220, 640, 831 |
| MalI | GATC | 4 cut(s) | 294, 474, 738, 899 |
| MboI | GATC | 4 cut(s) | 292, 472, 736, 897 |
| MfeI | CAATTG | 1 cut(s) | 630 |
| MflI | RGATCY | 1 cut(s) | 292 |
| MhlI | GDGCHC | 1 cut(s) | 932 |
| MluCI | AATT | 3 cut(s) | 275, 360, 630 |
| Mly113I | GGCGCC | 1 cut(s) | 454 |
| MlyI | GAGTC | 1 cut(s) | 614 |
| MnlI | CCTC | 7 cut(s) | 163, 166, 172, 185, 430, 573, 697 |
| MseI | TTAA | 2 cut(s) | 944, 977 |
| MslI | CAYNNNNRTG | 1 cut(s) | 681 |
| MspI | CCGG | 1 cut(s) | 660 |
| MspR9I | CCNGG | 1 cut(s) | 661 |
| MunI | CAATTG | 1 cut(s) | 630 |
| Mva1269I | GAATGC | 1 cut(s) | 7 |
| MvnI | CGCG | 4 cut(s) | 147, 219, 487, 500 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 202, 208, 994 |
| NarI | GGCGCC | 1 cut(s) | 454 |
| NciI | CCSGG | 1 cut(s) | 661 |
| NdeI | CATATG | 1 cut(s) | 480 |
| NdeII | GATC | 4 cut(s) | 292, 472, 736, 897 |
| NlaIII | CATG | 2 cut(s) | 437, 996 |
| NlaIV | GGNNCC | 2 cut(s) | 294, 455 |
| NmuCI | GTSAC | 2 cut(s) | 212, 831 |
| PciSI | GCTCTTC | 2 cut(s) | 507, 920 |
| PctI | GAATGC | 1 cut(s) | 7 |
| PfeI | GAWTC | 7 cut(s) | 95, 113, 250, 667, 713, 790, 890 |
| PkrI | GCNGC | 4 cut(s) | 121, 204, 569, 628 |
| PleI | GAGTC | 1 cut(s) | 613 |
| PluTI | GGCGCC | 1 cut(s) | 457 |
| PpsI | GAGTC | 1 cut(s) | 613 |
| PshBI | ATTAAT | 1 cut(s) | 944 |
| PsiI | TTATAA | 1 cut(s) | 920 |
| PspN4I | GGNNCC | 2 cut(s) | 294, 455 |
| PsuI | RGATCY | 1 cut(s) | 292 |
| RseI | CAYNNNNRTG | 1 cut(s) | 681 |
| SapI | GCTCTTC | 2 cut(s) | 507, 920 |
| SaqAI | TTAA | 2 cut(s) | 944, 977 |
| SatI | GCNGC | 4 cut(s) | 120, 203, 568, 627 |
| Sau3AI | GATC | 4 cut(s) | 292, 472, 736, 897 |
| SchI | GAGTC | 1 cut(s) | 614 |
| ScrFI | CCNGG | 1 cut(s) | 661 |
| SduI | GDGCHC | 1 cut(s) | 932 |
| SetI | ASST | 7 cut(s) | 204, 519, 600, 731, 848, 909, 958 |
| SfaNI | GCATC | 3 cut(s) | 304, 380, 537 |
| SfoI | GGCGCC | 1 cut(s) | 455 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 681 |
| SmlI | CTYRAG | 1 cut(s) | 206 |
| SmoI | CTYRAG | 1 cut(s) | 206 |
| Sse9I | AATT | 3 cut(s) | 275, 360, 630 |
| SsiI | CCGC | 5 cut(s) | 147, 217, 500, 800, 997 |
| SspDI | GGCGCC | 1 cut(s) | 453 |
| StyD4I | CCNGG | 1 cut(s) | 659 |
| StyI | CCWWGG | 1 cut(s) | 84 |
| TaaI | ACNGT | 2 cut(s) | 407, 421 |
| TaqI | TCGA | 5 cut(s) | 68, 389, 576, 608, 900 |
| TasI | AATT | 3 cut(s) | 275, 360, 630 |
| TfiI | GAWTC | 7 cut(s) | 95, 113, 250, 667, 713, 790, 890 |
| Tru1I | TTAA | 2 cut(s) | 944, 977 |
| Tru9I | TTAA | 2 cut(s) | 944, 977 |
| TseFI | GTSAC | 2 cut(s) | 212, 831 |
| TseI | GCWGC | 4 cut(s) | 119, 202, 567, 626 |
| Tsp45I | GTSAC | 2 cut(s) | 212, 831 |
| VspI | ATTAAT | 1 cut(s) | 944 |