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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 489 |
| AclWI | GGATC | 1 cut(s) | 476 |
| AcoI | YGGCCR | 3 cut(s) | 118, 442, 633 |
| AcsI | RAATTY | 1 cut(s) | 523 |
| AcuI | CTGAAG | 1 cut(s) | 306 |
| AfaI | GTAC | 2 cut(s) | 110, 505 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 65, 80 |
| AflIII | ACRYGT | 1 cut(s) | 494 |
| AgsI | TTSAA | 2 cut(s) | 26, 258 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 407, 439 |
| AluBI | AGCT | 3 cut(s) | 95, 611, 622 |
| AluI | AGCT | 3 cut(s) | 95, 611, 622 |
| AlwI | GGATC | 1 cut(s) | 476 |
| AoxI | GGCC | 3 cut(s) | 118, 442, 633 |
| ApeKI | GCWGC | 1 cut(s) | 329 |
| ApoI | RAATTY | 1 cut(s) | 523 |
| AsuHPI | GGTGA | 2 cut(s) | 446, 478 |
| AxyI | CCTNAGG | 1 cut(s) | 60 |
| BalI | TGGCCA | 2 cut(s) | 444, 635 |
| BbvI | GCAGC | 1 cut(s) | 316 |
| BccI | CCATC | 2 cut(s) | 202, 493 |
| BclI | TGATCA | 1 cut(s) | 646 |
| BfaI | CTAG | 1 cut(s) | 18 |
| BfmI | CTRYAG | 2 cut(s) | 330, 363 |
| BisI | GCNGC | 1 cut(s) | 330 |
| BlsI | GCNGC | 1 cut(s) | 331 |
| BmiI | GGNNCC | 1 cut(s) | 52 |
| BmsI | GCATC | 1 cut(s) | 535 |
| BpmI | CTGGAG | 1 cut(s) | 117 |
| BsaJI | CCNNGG | 1 cut(s) | 306 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 65, 80 |
| Bse21I | CCTNAGG | 1 cut(s) | 60 |
| BseDI | CCNNGG | 1 cut(s) | 306 |
| BseGI | GGATG | 2 cut(s) | 485, 592 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 65, 80 |
| BseMII | CTCAG | 1 cut(s) | 51 |
| BseRI | GAGGAG | 1 cut(s) | 569 |
| BseXI | GCAGC | 1 cut(s) | 316 |
| BseYI | CCCAGC | 1 cut(s) | 622 |
| BshFI | GGCC | 3 cut(s) | 120, 444, 635 |
| BsiSI | CCGG | 1 cut(s) | 117 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 65, 80 |
| BsnI | GGCC | 3 cut(s) | 120, 444, 635 |
| Bsp143I | GATC | 3 cut(s) | 481, 591, 646 |
| BspACI | CCGC | 1 cut(s) | 489 |
| BspANI | GGCC | 3 cut(s) | 120, 444, 635 |
| BspCNI | CTCAG | 1 cut(s) | 52 |
| BspHI | TCATGA | 1 cut(s) | 594 |
| BspLI | GGNNCC | 1 cut(s) | 52 |
| BspMAI | CTGCAG | 1 cut(s) | 334 |
| BspPI | GGATC | 1 cut(s) | 476 |
| BssECI | CCNNGG | 1 cut(s) | 306 |
| BssMI | GATC | 3 cut(s) | 481, 591, 646 |
| BssT1I | CCWWGG | 1 cut(s) | 306 |
| Bst4CI | ACNGT | 3 cut(s) | 55, 466, 601 |
| BstC8I | GCNNGC | 2 cut(s) | 561, 609 |
| BstDEI | CTNAG | 3 cut(s) | 60, 135, 147 |
| BstF5I | GGATG | 2 cut(s) | 485, 592 |
| BstKTI | GATC | 3 cut(s) | 484, 594, 649 |
| BstMBI | GATC | 3 cut(s) | 481, 591, 646 |
| BstSFI | CTRYAG | 2 cut(s) | 330, 363 |
| BstV1I | GCAGC | 1 cut(s) | 316 |
| Bsu36I | CCTNAGG | 1 cut(s) | 60 |
| BsuRI | GGCC | 3 cut(s) | 120, 444, 635 |
| BtsCI | GGATG | 2 cut(s) | 485, 592 |
| BtsI | GCAGTG | 1 cut(s) | 339 |
| BtsIMutI | CAGTG | 2 cut(s) | 339, 606 |
| Cac8I | GCNNGC | 2 cut(s) | 561, 609 |
| CciI | TCATGA | 1 cut(s) | 594 |
| Csp6I | GTAC | 2 cut(s) | 109, 504 |
| CviAII | CATG | 4 cut(s) | 77, 500, 595, 629 |
| CviQI | GTAC | 2 cut(s) | 109, 504 |
| DdeI | CTNAG | 3 cut(s) | 60, 135, 147 |
| DpnI | GATC | 3 cut(s) | 483, 593, 648 |
| DpnII | GATC | 3 cut(s) | 481, 591, 646 |
| EaeI | YGGCCR | 3 cut(s) | 118, 442, 633 |
| Eco130I | CCWWGG | 1 cut(s) | 306 |
| Eco57I | CTGAAG | 1 cut(s) | 306 |
| Eco81I | CCTNAGG | 1 cut(s) | 60 |
| EcoT14I | CCWWGG | 1 cut(s) | 306 |
| ErhI | CCWWGG | 1 cut(s) | 306 |
| FaeI | CATG | 4 cut(s) | 80, 503, 598, 632 |
| FatI | CATG | 4 cut(s) | 76, 499, 594, 628 |
| FbaI | TGATCA | 1 cut(s) | 646 |
| Fnu4HI | GCNGC | 1 cut(s) | 330 |
| FokI | GGATG | 2 cut(s) | 472, 599 |
| Fsp4HI | GCNGC | 1 cut(s) | 330 |
| FspBI | CTAG | 1 cut(s) | 18 |
| GluI | GCNGC | 1 cut(s) | 330 |
| GsaI | CCCAGC | 1 cut(s) | 626 |
| GsuI | CTGGAG | 1 cut(s) | 117 |
| HaeIII | GGCC | 3 cut(s) | 120, 444, 635 |
| HapII | CCGG | 1 cut(s) | 117 |
| Hin1II | CATG | 4 cut(s) | 80, 503, 598, 632 |
| HinfI | GANTC | 1 cut(s) | 568 |
| HpaII | CCGG | 1 cut(s) | 117 |
| HphI | GGTGA | 2 cut(s) | 446, 478 |
| Hpy166II | GTNNAC | 1 cut(s) | 337 |
| Hpy188III | TCNNGA | 1 cut(s) | 595 |
| Hpy8I | GTNNAC | 1 cut(s) | 337 |
| HpyAV | CCTTC | 3 cut(s) | 80, 173, 388 |
| HpyCH4III | ACNGT | 3 cut(s) | 55, 466, 601 |
| HpyCH4IV | ACGT | 1 cut(s) | 494 |
| HpyCH4V | TGCA | 4 cut(s) | 226, 332, 420, 461 |
| HpyF3I | CTNAG | 3 cut(s) | 60, 135, 147 |
| HpySE526I | ACGT | 1 cut(s) | 494 |
| Hsp92II | CATG | 4 cut(s) | 80, 503, 598, 632 |
| Ksp22I | TGATCA | 1 cut(s) | 646 |
| Kzo9I | GATC | 3 cut(s) | 481, 591, 646 |
| LmnI | GCTCC | 4 cut(s) | 98, 182, 556, 619 |
| LpnPI | CCDG | 7 cut(s) | 72, 81, 130, 154, 388, 545, 608 |
| Lsp1109I | GCAGC | 1 cut(s) | 316 |
| LweI | GCATC | 1 cut(s) | 535 |
| MaeI | CTAG | 1 cut(s) | 18 |
| MaeII | ACGT | 1 cut(s) | 494 |
| MaeIII | GTNAC | 2 cut(s) | 187, 397 |
| MalI | GATC | 3 cut(s) | 483, 593, 648 |
| MboI | GATC | 3 cut(s) | 481, 591, 646 |
| MboII | GAAGA | 2 cut(s) | 299, 424 |
| MfeI | CAATTG | 1 cut(s) | 29 |
| MlsI | TGGCCA | 2 cut(s) | 444, 635 |
| MluCI | AATT | 2 cut(s) | 29, 523 |
| MluNI | TGGCCA | 2 cut(s) | 444, 635 |
| MmeI | TCCRAC | 1 cut(s) | 61 |
| MnlI | CCTC | 6 cut(s) | 55, 84, 310, 343, 352, 547 |
| Mox20I | TGGCCA | 2 cut(s) | 444, 635 |
| MscI | TGGCCA | 2 cut(s) | 444, 635 |
| MseI | TTAA | 2 cut(s) | 45, 294 |
| MslI | CAYNNNNRTG | 1 cut(s) | 599 |
| Msp20I | TGGCCA | 2 cut(s) | 444, 635 |
| MspI | CCGG | 1 cut(s) | 117 |
| MunI | CAATTG | 1 cut(s) | 29 |
| NdeII | GATC | 3 cut(s) | 481, 591, 646 |
| NlaIII | CATG | 4 cut(s) | 80, 503, 598, 632 |
| NlaIV | GGNNCC | 1 cut(s) | 52 |
| NmuCI | GTSAC | 1 cut(s) | 187 |
| PagI | TCATGA | 1 cut(s) | 594 |
| PfeI | GAWTC | 1 cut(s) | 568 |
| PkrI | GCNGC | 1 cut(s) | 331 |
| PspFI | CCCAGC | 1 cut(s) | 622 |
| PspN4I | GGNNCC | 1 cut(s) | 52 |
| PstI | CTGCAG | 1 cut(s) | 334 |
| RsaI | GTAC | 2 cut(s) | 110, 505 |
| RsaNI | GTAC | 2 cut(s) | 109, 504 |
| RseI | CAYNNNNRTG | 1 cut(s) | 599 |
| SaqAI | TTAA | 2 cut(s) | 45, 294 |
| SatI | GCNGC | 1 cut(s) | 330 |
| Sau3AI | GATC | 3 cut(s) | 481, 591, 646 |
| SetI | ASST | 7 cut(s) | 66, 97, 255, 399, 497, 613, 624 |
| SfaNI | GCATC | 1 cut(s) | 535 |
| SfcI | CTRYAG | 2 cut(s) | 330, 363 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 599 |
| Sse9I | AATT | 2 cut(s) | 29, 523 |
| SsiI | CCGC | 1 cut(s) | 489 |
| SspMI | CTAG | 1 cut(s) | 18 |
| StyI | CCWWGG | 1 cut(s) | 306 |
| TaaI | ACNGT | 3 cut(s) | 55, 466, 601 |
| TaiI | ACGT | 1 cut(s) | 497 |
| TasI | AATT | 2 cut(s) | 29, 523 |
| TatI | WGTACW | 1 cut(s) | 108 |
| TfiI | GAWTC | 1 cut(s) | 568 |
| Tru1I | TTAA | 2 cut(s) | 45, 294 |
| Tru9I | TTAA | 2 cut(s) | 45, 294 |
| TscAI | CASTG | 2 cut(s) | 339, 606 |
| TseFI | GTSAC | 1 cut(s) | 187 |
| TseI | GCWGC | 1 cut(s) | 329 |
| Tsp45I | GTSAC | 1 cut(s) | 187 |
| TspDTI | ATGAA | 1 cut(s) | 534 |
| TspGWI | ACGGA | 1 cut(s) | 191 |
| TspRI | CASTG | 2 cut(s) | 339, 606 |
| XapI | RAATTY | 1 cut(s) | 523 |
| XspI | CTAG | 1 cut(s) | 18 |