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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1117 |
| AccB1I | GGYRCC | 1 cut(s) | 1117 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 249 |
| AccI | GTMKAC | 2 cut(s) | 659, 964 |
| AciI | CCGC | 2 cut(s) | 121, 1160 |
| AclWI | GGATC | 1 cut(s) | 358 |
| AcoI | YGGCCR | 1 cut(s) | 309 |
| AcsI | RAATTY | 2 cut(s) | 107, 799 |
| AfaI | GTAC | 3 cut(s) | 158, 849, 1119 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 249, 366 |
| AflIII | ACRYGT | 1 cut(s) | 1074 |
| AgeI | ACCGGT | 1 cut(s) | 662 |
| AgsI | TTSAA | 8 cut(s) | 10, 131, 208, 323, 397, 749, 799, 1103 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 452 |
| AjnI | CCWGG | 2 cut(s) | 1113, 1178 |
| AluBI | AGCT | 8 cut(s) | 148, 211, 626, 723, 775, 780, 1042, 1170 |
| AluI | AGCT | 8 cut(s) | 148, 211, 626, 723, 775, 780, 1042, 1170 |
| Alw21I | GWGCWC | 1 cut(s) | 777 |
| AlwI | GGATC | 1 cut(s) | 358 |
| Ama87I | CYCGRG | 1 cut(s) | 20 |
| AoxI | GGCC | 2 cut(s) | 309, 1181 |
| ApeKI | GCWGC | 2 cut(s) | 723, 917 |
| ApoI | RAATTY | 2 cut(s) | 107, 799 |
| AsiGI | ACCGGT | 1 cut(s) | 662 |
| Asp718I | GGTACC | 1 cut(s) | 1117 |
| AspS9I | GGNCC | 2 cut(s) | 235, 1189 |
| AsuC2I | CCSGG | 1 cut(s) | 414 |
| AsuHPI | GGTGA | 4 cut(s) | 282, 376, 1037, 1118 |
| AvaI | CYCGRG | 1 cut(s) | 20 |
| AvaII | GGWCC | 2 cut(s) | 235, 1189 |
| AxyI | CCTNAGG | 2 cut(s) | 294, 1185 |
| BanI | GGYRCC | 1 cut(s) | 1117 |
| BanII | GRGCYC | 1 cut(s) | 777 |
| Bbv12I | GWGCWC | 1 cut(s) | 777 |
| BbvI | GCAGC | 2 cut(s) | 710, 904 |
| BccI | CCATC | 2 cut(s) | 269, 976 |
| BceAI | ACGGC | 1 cut(s) | 324 |
| BciT130I | CCWGG | 2 cut(s) | 1115, 1180 |
| BcnI | CCSGG | 1 cut(s) | 414 |
| BfaI | CTAG | 1 cut(s) | 1193 |
| BisI | GCNGC | 2 cut(s) | 724, 918 |
| BlpI | GCTNAGC | 2 cut(s) | 771, 776 |
| BlsI | GCNGC | 2 cut(s) | 725, 919 |
| Bme1390I | CCNGG | 3 cut(s) | 414, 1115, 1180 |
| Bme18I | GGWCC | 2 cut(s) | 235, 1189 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 452 |
| BmeT110I | CYCGRG | 1 cut(s) | 20 |
| BmgT120I | GGNCC | 2 cut(s) | 235, 1189 |
| BmiI | GGNNCC | 1 cut(s) | 1119 |
| BmrFI | CCNGG | 3 cut(s) | 414, 1115, 1180 |
| BmsI | GCATC | 8 cut(s) | 44, 66, 219, 418, 796, 817, 1099, 1147 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 764, 796 |
| Bpu10I | CCTNAGC | 2 cut(s) | 388, 858 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 771, 776 |
| BpuMI | CCSGG | 1 cut(s) | 414 |
| BsaAI | YACGTR | 1 cut(s) | 176 |
| BsaJI | CCNNGG | 2 cut(s) | 1113, 1149 |
| BsaWI | WCCGGW | 1 cut(s) | 662 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 249, 366 |
| Bse118I | RCCGGY | 1 cut(s) | 662 |
| Bse1I | ACTGG | 2 cut(s) | 692, 972 |
| Bse21I | CCTNAGG | 2 cut(s) | 294, 1185 |
| Bse3DI | GCAATG | 2 cut(s) | 885, 999 |
| BseBI | CCWGG | 2 cut(s) | 1115, 1180 |
| BseDI | CCNNGG | 2 cut(s) | 1113, 1149 |
| BseGI | GGATG | 7 cut(s) | 57, 174, 280, 409, 832, 895, 1141 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 249, 366 |
| BseMI | GCAATG | 2 cut(s) | 885, 999 |
| BseMII | CTCAG | 6 cut(s) | 285, 336, 512, 641, 762, 790 |
| BseNI | ACTGG | 2 cut(s) | 692, 972 |
| BseRI | GAGGAG | 5 cut(s) | 441, 548, 551, 560, 593 |
| BseXI | GCAGC | 2 cut(s) | 710, 904 |
| BseYI | CCCAGC | 1 cut(s) | 211 |
| BshFI | GGCC | 2 cut(s) | 311, 1183 |
| BshNI | GGYRCC | 1 cut(s) | 1117 |
| BshTI | ACCGGT | 1 cut(s) | 662 |
| BsiHKAI | GWGCWC | 1 cut(s) | 777 |
| BsiHKCI | CYCGRG | 1 cut(s) | 20 |
| BsiSI | CCGG | 2 cut(s) | 414, 663 |
| BslFI | GGGAC | 2 cut(s) | 3, 203 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 249, 366 |
| BsmFI | GGGAC | 2 cut(s) | 3, 203 |
| BsmI | GAATGC | 1 cut(s) | 262 |
| BsnI | GGCC | 2 cut(s) | 311, 1183 |
| BsoBI | CYCGRG | 1 cut(s) | 20 |
| Bsp1286I | GDGCHC | 1 cut(s) | 777 |
| Bsp143I | GATC | 1 cut(s) | 350 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 771, 776 |
| BspACI | CCGC | 2 cut(s) | 121, 1160 |
| BspANI | GGCC | 2 cut(s) | 311, 1183 |
| BspCNI | CTCAG | 6 cut(s) | 286, 337, 511, 640, 763, 789 |
| BspLI | GGNNCC | 1 cut(s) | 1119 |
| BspPI | GGATC | 1 cut(s) | 358 |
| BspT107I | GGYRCC | 1 cut(s) | 1117 |
| BsrDI | GCAATG | 2 cut(s) | 885, 999 |
| BsrFI | RCCGGY | 1 cut(s) | 662 |
| BsrI | ACTGG | 2 cut(s) | 692, 972 |
| BssAI | RCCGGY | 1 cut(s) | 662 |
| BssECI | CCNNGG | 2 cut(s) | 1113, 1149 |
| BssMI | GATC | 1 cut(s) | 350 |
| Bst2UI | CCWGG | 2 cut(s) | 1115, 1180 |
| Bst4CI | ACNGT | 5 cut(s) | 17, 239, 364, 642, 1150 |
| Bst6I | CTCTTC | 1 cut(s) | 785 |
| BstBAI | YACGTR | 1 cut(s) | 176 |
| BstDSI | CCRYGG | 1 cut(s) | 1149 |
| BstF5I | GGATG | 7 cut(s) | 57, 174, 280, 409, 832, 895, 1141 |
| BstKTI | GATC | 1 cut(s) | 353 |
| BstMBI | GATC | 1 cut(s) | 350 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 76, 308, 475, 914, 1223 |
| BstNI | CCWGG | 2 cut(s) | 1115, 1180 |
| BstSCI | CCNGG | 3 cut(s) | 412, 1113, 1178 |
| BstV1I | GCAGC | 2 cut(s) | 710, 904 |
| Bsu36I | CCTNAGG | 2 cut(s) | 294, 1185 |
| BsuRI | GGCC | 2 cut(s) | 311, 1183 |
| BtgI | CCRYGG | 1 cut(s) | 1149 |
| BtsCI | GGATG | 7 cut(s) | 57, 174, 280, 409, 832, 895, 1141 |
| BtsIMutI | CAGTG | 3 cut(s) | 638, 699, 1027 |
| Cfr10I | RCCGGY | 1 cut(s) | 662 |
| Cfr13I | GGNCC | 2 cut(s) | 235, 1189 |
| Csp6I | GTAC | 3 cut(s) | 157, 848, 1118 |
| CspAI | ACCGGT | 1 cut(s) | 662 |
| CviAII | CATG | 4 cut(s) | 842, 1049, 1205, 1246 |
| CviQI | GTAC | 3 cut(s) | 157, 848, 1118 |
| DpnI | GATC | 1 cut(s) | 352 |
| DpnII | GATC | 1 cut(s) | 350 |
| DriI | GACNNNNNGTC | 1 cut(s) | 452 |
| EaeI | YGGCCR | 1 cut(s) | 309 |
| Eam1104I | CTCTTC | 1 cut(s) | 785 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 452 |
| EarI | CTCTTC | 1 cut(s) | 785 |
| Ecl136II | GAGCTC | 1 cut(s) | 775 |
| Eco24I | GRGCYC | 1 cut(s) | 777 |
| Eco47I | GGWCC | 2 cut(s) | 235, 1189 |
| Eco53kI | GAGCTC | 1 cut(s) | 775 |
| Eco81I | CCTNAGG | 2 cut(s) | 294, 1185 |
| Eco88I | CYCGRG | 1 cut(s) | 20 |
| EcoICRI | GAGCTC | 1 cut(s) | 775 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1189 |
| EcoRII | CCWGG | 2 cut(s) | 1113, 1178 |
| EcoT22I | ATGCAT | 1 cut(s) | 59 |
| EcoT38I | GRGCYC | 1 cut(s) | 777 |
| FaeI | CATG | 4 cut(s) | 845, 1052, 1208, 1249 |
| FaqI | GGGAC | 2 cut(s) | 3, 203 |
| FatI | CATG | 4 cut(s) | 841, 1048, 1204, 1245 |
| FauI | CCCGC | 1 cut(s) | 114 |
| FblI | GTMKAC | 2 cut(s) | 659, 964 |
| Fnu4HI | GCNGC | 2 cut(s) | 724, 918 |
| FokI | GGATG | 7 cut(s) | 44, 181, 287, 396, 839, 902, 1148 |
| FriOI | GRGCYC | 1 cut(s) | 777 |
| Fsp4HI | GCNGC | 2 cut(s) | 724, 918 |
| FspBI | CTAG | 1 cut(s) | 1193 |
| GluI | GCNGC | 2 cut(s) | 724, 918 |
| GsaI | CCCAGC | 1 cut(s) | 215 |
| HaeIII | GGCC | 2 cut(s) | 311, 1183 |
| HapII | CCGG | 2 cut(s) | 414, 663 |
| Hin1II | CATG | 4 cut(s) | 845, 1052, 1208, 1249 |
| HincII | GTYRAC | 2 cut(s) | 372, 965 |
| HindII | GTYRAC | 2 cut(s) | 372, 965 |
| HindIII | AAGCTT | 1 cut(s) | 146 |
| HinfI | GANTC | 5 cut(s) | 216, 341, 635, 1028, 1123 |
| HpaII | CCGG | 2 cut(s) | 414, 663 |
| HphI | GGTGA | 4 cut(s) | 282, 376, 1037, 1118 |
| Hpy166II | GTNNAC | 5 cut(s) | 372, 660, 697, 965, 1153 |
| Hpy188I | TCNGA | 2 cut(s) | 268, 346 |
| Hpy188III | TCNNGA | 5 cut(s) | 20, 41, 195, 739, 935 |
| Hpy8I | GTNNAC | 5 cut(s) | 372, 660, 697, 965, 1153 |
| HpyAV | CCTTC | 4 cut(s) | 642, 736, 1097, 1126 |
| HpyCH4III | ACNGT | 5 cut(s) | 17, 239, 364, 642, 1150 |
| HpyCH4IV | ACGT | 2 cut(s) | 175, 1074 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 76, 308, 475, 914, 1223 |
| HpySE526I | ACGT | 2 cut(s) | 175, 1074 |
| Hsp92II | CATG | 4 cut(s) | 845, 1052, 1208, 1249 |
| KpnI | GGTACC | 1 cut(s) | 1121 |
| Kzo9I | GATC | 1 cut(s) | 350 |
| LmnI | GCTCC | 5 cut(s) | 538, 720, 913, 1167, 1208 |
| Lsp1109I | GCAGC | 2 cut(s) | 710, 904 |
| LweI | GCATC | 8 cut(s) | 44, 66, 219, 418, 796, 817, 1099, 1147 |
| MaeI | CTAG | 1 cut(s) | 1193 |
| MaeII | ACGT | 2 cut(s) | 175, 1074 |
| MaeIII | GTNAC | 7 cut(s) | 171, 278, 636, 685, 895, 1198, 1219 |
| MalI | GATC | 1 cut(s) | 352 |
| MboI | GATC | 1 cut(s) | 350 |
| MboII | GAAGA | 4 cut(s) | 101, 116, 409, 802 |
| MfeI | CAATTG | 1 cut(s) | 222 |
| MhlI | GDGCHC | 1 cut(s) | 777 |
| MluCI | AATT | 7 cut(s) | 107, 203, 222, 706, 733, 799, 922 |
| MlyI | GAGTC | 3 cut(s) | 225, 644, 1037 |
| MmeI | TCCRAC | 1 cut(s) | 9 |
| Mph1103I | ATGCAT | 1 cut(s) | 59 |
| MseI | TTAA | 6 cut(s) | 111, 150, 329, 786, 1145, 1252 |
| MspI | CCGG | 2 cut(s) | 414, 663 |
| MspR9I | CCNGG | 3 cut(s) | 414, 1115, 1180 |
| MunI | CAATTG | 1 cut(s) | 222 |
| Mva1269I | GAATGC | 1 cut(s) | 262 |
| MvaI | CCWGG | 2 cut(s) | 1115, 1180 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 76, 308, 475, 914, 1223 |
| NciI | CCSGG | 1 cut(s) | 414 |
| NdeII | GATC | 1 cut(s) | 350 |
| NlaIII | CATG | 4 cut(s) | 845, 1052, 1208, 1249 |
| NlaIV | GGNNCC | 1 cut(s) | 1119 |
| NmuCI | GTSAC | 2 cut(s) | 171, 636 |
| NsiI | ATGCAT | 1 cut(s) | 59 |
| PctI | GAATGC | 1 cut(s) | 262 |
| PfeI | GAWTC | 2 cut(s) | 341, 1123 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 249 |
| PinAI | ACCGGT | 1 cut(s) | 662 |
| PkrI | GCNGC | 2 cut(s) | 725, 919 |
| PleI | GAGTC | 3 cut(s) | 224, 643, 1036 |
| PpsI | GAGTC | 3 cut(s) | 224, 643, 1036 |
| Ppu21I | YACGTR | 1 cut(s) | 176 |
| PpuMI | RGGWCCY | 1 cut(s) | 1189 |
| Psp124BI | GAGCTC | 1 cut(s) | 777 |
| Psp5II | RGGWCCY | 1 cut(s) | 1189 |
| Psp6I | CCWGG | 2 cut(s) | 1113, 1178 |
| PspFI | CCCAGC | 1 cut(s) | 211 |
| PspGI | CCWGG | 2 cut(s) | 1113, 1178 |
| PspN4I | GGNNCC | 1 cut(s) | 1119 |
| PspPI | GGNCC | 2 cut(s) | 235, 1189 |
| PspPPI | RGGWCCY | 1 cut(s) | 1189 |
| RsaI | GTAC | 3 cut(s) | 158, 849, 1119 |
| RsaNI | GTAC | 3 cut(s) | 157, 848, 1118 |
| SacI | GAGCTC | 1 cut(s) | 777 |
| SalI | GTCGAC | 1 cut(s) | 963 |
| SaqAI | TTAA | 6 cut(s) | 111, 150, 329, 786, 1145, 1252 |
| SatI | GCNGC | 2 cut(s) | 724, 918 |
| Sau3AI | GATC | 1 cut(s) | 350 |
| Sau96I | GGNCC | 2 cut(s) | 235, 1189 |
| SchI | GAGTC | 3 cut(s) | 225, 644, 1037 |
| ScrFI | CCNGG | 3 cut(s) | 414, 1115, 1180 |
| SduI | GDGCHC | 1 cut(s) | 777 |
| SfaNI | GCATC | 8 cut(s) | 44, 66, 219, 418, 796, 817, 1099, 1147 |
| SinI | GGWCC | 2 cut(s) | 235, 1189 |
| Sse9I | AATT | 7 cut(s) | 107, 203, 222, 706, 733, 799, 922 |
| SsiI | CCGC | 2 cut(s) | 121, 1160 |
| SspMI | CTAG | 1 cut(s) | 1193 |
| SstI | GAGCTC | 1 cut(s) | 777 |
| StyD4I | CCNGG | 3 cut(s) | 412, 1113, 1178 |
| TaaI | ACNGT | 5 cut(s) | 17, 239, 364, 642, 1150 |
| TaiI | ACGT | 2 cut(s) | 178, 1077 |
| TaqI | TCGA | 3 cut(s) | 445, 738, 964 |
| TasI | AATT | 7 cut(s) | 107, 203, 222, 706, 733, 799, 922 |
| TatI | WGTACW | 1 cut(s) | 156 |
| TfiI | GAWTC | 2 cut(s) | 341, 1123 |
| Tru1I | TTAA | 6 cut(s) | 111, 150, 329, 786, 1145, 1252 |
| Tru9I | TTAA | 6 cut(s) | 111, 150, 329, 786, 1145, 1252 |
| TscAI | CASTG | 3 cut(s) | 645, 699, 1027 |
| TseFI | GTSAC | 2 cut(s) | 171, 636 |
| TseI | GCWGC | 2 cut(s) | 723, 917 |
| Tsp45I | GTSAC | 2 cut(s) | 171, 636 |
| TspDTI | ATGAA | 5 cut(s) | 627, 858, 966, 1145, 1234 |
| TspRI | CASTG | 3 cut(s) | 645, 699, 1027 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 249 |
| VpaK11BI | GGWCC | 2 cut(s) | 235, 1189 |
| XapI | RAATTY | 2 cut(s) | 107, 799 |
| XmiI | GTMKAC | 2 cut(s) | 659, 964 |
| XspI | CTAG | 1 cut(s) | 1193 |
| Zsp2I | ATGCAT | 1 cut(s) | 59 |