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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1039 |
| AccII | CGCG | 1 cut(s) | 765 |
| AccIII | TCCGGA | 2 cut(s) | 448, 1096 |
| AciI | CCGC | 4 cut(s) | 395, 606, 635, 896 |
| AclWI | GGATC | 1 cut(s) | 112 |
| AcyI | GRCGYC | 1 cut(s) | 843 |
| AfaI | GTAC | 2 cut(s) | 177, 876 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 960, 1039 |
| AflIII | ACRYGT | 1 cut(s) | 985 |
| AgsI | TTSAA | 5 cut(s) | 40, 248, 518, 701, 868 |
| AjnI | CCWGG | 1 cut(s) | 166 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 263, 295, 464, 496 |
| AluBI | AGCT | 7 cut(s) | 206, 320, 418, 460, 503, 727, 1093 |
| AluI | AGCT | 7 cut(s) | 206, 320, 418, 460, 503, 727, 1093 |
| Alw21I | GWGCWC | 2 cut(s) | 138, 462 |
| Alw26I | GTCTC | 8 cut(s) | 53, 148, 245, 576, 617, 772, 846, 955 |
| AlwI | GGATC | 1 cut(s) | 112 |
| Ama87I | CYCGRG | 1 cut(s) | 158 |
| Aor13HI | TCCGGA | 2 cut(s) | 448, 1096 |
| AoxI | GGCC | 2 cut(s) | 897, 1057 |
| ApeKI | GCWGC | 5 cut(s) | 328, 418, 500, 632, 1090 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 300 |
| AspLEI | GCGC | 1 cut(s) | 765 |
| AspS9I | GGNCC | 1 cut(s) | 898 |
| AsuC2I | CCSGG | 2 cut(s) | 1061, 1076 |
| AsuHPI | GGTGA | 4 cut(s) | 19, 423, 467, 1090 |
| AvaI | CYCGRG | 1 cut(s) | 158 |
| BanII | GRGCYC | 1 cut(s) | 462 |
| Bbv12I | GWGCWC | 2 cut(s) | 138, 462 |
| BbvCI | CCTCAGC | 1 cut(s) | 354 |
| BbvI | GCAGC | 5 cut(s) | 340, 405, 512, 619, 1102 |
| BccI | CCATC | 1 cut(s) | 95 |
| BceAI | ACGGC | 2 cut(s) | 32, 573 |
| BciT130I | CCWGG | 1 cut(s) | 168 |
| BciVI | GTATCC | 1 cut(s) | 1093 |
| BclI | TGATCA | 1 cut(s) | 406 |
| BcnI | CCSGG | 2 cut(s) | 1061, 1076 |
| BcoDI | GTCTC | 8 cut(s) | 53, 148, 245, 576, 617, 772, 846, 955 |
| BfaI | CTAG | 2 cut(s) | 1020, 1025 |
| BfmI | CTRYAG | 1 cut(s) | 684 |
| BfuI | GTATCC | 1 cut(s) | 1093 |
| BglII | AGATCT | 1 cut(s) | 616 |
| BisI | GCNGC | 7 cut(s) | 329, 396, 419, 501, 633, 897, 1091 |
| BlsI | GCNGC | 7 cut(s) | 330, 397, 420, 502, 634, 898, 1092 |
| Bme1390I | CCNGG | 3 cut(s) | 168, 1061, 1076 |
| BmeT110I | CYCGRG | 1 cut(s) | 158 |
| BmgT120I | GGNCC | 1 cut(s) | 898 |
| BmiI | GGNNCC | 3 cut(s) | 545, 594, 974 |
| BmrFI | CCNGG | 3 cut(s) | 168, 1061, 1076 |
| BmsI | GCATC | 4 cut(s) | 172, 487, 722, 784 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 957, 989 |
| BpmI | CTGGAG | 1 cut(s) | 641 |
| Bpu10I | CCTNAGC | 1 cut(s) | 354 |
| BpuMI | CCSGG | 2 cut(s) | 1061, 1076 |
| Bsa29I | ATCGAT | 1 cut(s) | 107 |
| BsaHI | GRCGYC | 1 cut(s) | 843 |
| BsaI | GGTCTC | 1 cut(s) | 148 |
| BsaWI | WCCGGW | 2 cut(s) | 448, 1096 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 843, 873 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 960, 1039 |
| Bse1I | ACTGG | 2 cut(s) | 657, 812 |
| BseAI | TCCGGA | 2 cut(s) | 448, 1096 |
| BseBI | CCWGG | 1 cut(s) | 168 |
| BseCI | ATCGAT | 1 cut(s) | 107 |
| BseGI | GGATG | 3 cut(s) | 163, 826, 933 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 960, 1039 |
| BseMII | CTCAG | 2 cut(s) | 345, 783 |
| BseNI | ACTGG | 2 cut(s) | 657, 812 |
| BseRI | GAGGAG | 3 cut(s) | 371, 584, 587 |
| BseXI | GCAGC | 5 cut(s) | 340, 405, 512, 619, 1102 |
| BsgI | GTGCAG | 1 cut(s) | 74 |
| Bsh1236I | CGCG | 1 cut(s) | 765 |
| BshFI | GGCC | 2 cut(s) | 899, 1059 |
| BshVI | ATCGAT | 1 cut(s) | 107 |
| BsiHKAI | GWGCWC | 2 cut(s) | 138, 462 |
| BsiHKCI | CYCGRG | 1 cut(s) | 158 |
| BsiSI | CCGG | 4 cut(s) | 449, 1060, 1076, 1097 |
| BslFI | GGGAC | 1 cut(s) | 903 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 960, 1039 |
| BsmAI | GTCTC | 8 cut(s) | 53, 148, 245, 576, 617, 772, 846, 955 |
| BsmBI | CGTCTC | 2 cut(s) | 617, 772 |
| BsmFI | GGGAC | 1 cut(s) | 903 |
| BsmI | GAATGC | 1 cut(s) | 1034 |
| BsnI | GGCC | 2 cut(s) | 899, 1059 |
| Bso31I | GGTCTC | 1 cut(s) | 148 |
| BsoBI | CYCGRG | 1 cut(s) | 158 |
| Bsp1286I | GDGCHC | 2 cut(s) | 138, 462 |
| Bsp13I | TCCGGA | 2 cut(s) | 448, 1096 |
| Bsp143I | GATC | 5 cut(s) | 104, 217, 406, 616, 721 |
| BspACI | CCGC | 4 cut(s) | 395, 606, 635, 896 |
| BspANI | GGCC | 2 cut(s) | 899, 1059 |
| BspCNI | CTCAG | 2 cut(s) | 346, 782 |
| BspDI | ATCGAT | 1 cut(s) | 107 |
| BspEI | TCCGGA | 2 cut(s) | 448, 1096 |
| BspFNI | CGCG | 1 cut(s) | 765 |
| BspHI | TCATGA | 1 cut(s) | 526 |
| BspLI | GGNNCC | 3 cut(s) | 545, 594, 974 |
| BspPI | GGATC | 1 cut(s) | 112 |
| BspTNI | GGTCTC | 1 cut(s) | 148 |
| BsrI | ACTGG | 2 cut(s) | 657, 812 |
| BssMI | GATC | 5 cut(s) | 104, 217, 406, 616, 721 |
| BssNI | GRCGYC | 1 cut(s) | 843 |
| Bst2UI | CCWGG | 1 cut(s) | 168 |
| Bst4CI | ACNGT | 4 cut(s) | 256, 455, 835, 1105 |
| Bst6I | CTCTTC | 5 cut(s) | 243, 266, 282, 470, 513 |
| BstACI | GRCGYC | 1 cut(s) | 843 |
| BstC8I | GCNNGC | 1 cut(s) | 363 |
| BstDEI | CTNAG | 2 cut(s) | 354, 769 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 958 |
| BstF5I | GGATG | 3 cut(s) | 163, 826, 933 |
| BstFNI | CGCG | 1 cut(s) | 765 |
| BstHHI | GCGC | 1 cut(s) | 765 |
| BstKTI | GATC | 5 cut(s) | 107, 220, 409, 619, 724 |
| BstMAI | GTCTC | 8 cut(s) | 53, 148, 245, 576, 617, 772, 846, 955 |
| BstMBI | GATC | 5 cut(s) | 104, 217, 406, 616, 721 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 383, 392 |
| BstNI | CCWGG | 1 cut(s) | 168 |
| BstNSI | RCATGY | 2 cut(s) | 989, 1050 |
| BstSCI | CCNGG | 3 cut(s) | 166, 1059, 1074 |
| BstSFI | CTRYAG | 1 cut(s) | 684 |
| BstUI | CGCG | 1 cut(s) | 765 |
| BstV1I | GCAGC | 5 cut(s) | 340, 405, 512, 619, 1102 |
| BstX2I | RGATCY | 1 cut(s) | 616 |
| BstYI | RGATCY | 1 cut(s) | 616 |
| Bsu15I | ATCGAT | 1 cut(s) | 107 |
| BsuI | GTATCC | 1 cut(s) | 1093 |
| BsuRI | GGCC | 2 cut(s) | 899, 1059 |
| BsuTUI | ATCGAT | 1 cut(s) | 107 |
| BtsCI | GGATG | 3 cut(s) | 163, 826, 933 |
| BtsI | GCAGTG | 1 cut(s) | 474 |
| BtsIMutI | CAGTG | 4 cut(s) | 261, 474, 819, 831 |
| Cac8I | GCNNGC | 1 cut(s) | 363 |
| CciI | TCATGA | 1 cut(s) | 526 |
| CfoI | GCGC | 1 cut(s) | 765 |
| Cfr13I | GGNCC | 1 cut(s) | 898 |
| ClaI | ATCGAT | 1 cut(s) | 107 |
| CseI | GACGC | 2 cut(s) | 754, 851 |
| Csp6I | GTAC | 2 cut(s) | 176, 875 |
| CviAII | CATG | 6 cut(s) | 527, 589, 734, 913, 986, 1047 |
| CviQI | GTAC | 2 cut(s) | 176, 875 |
| DdeI | CTNAG | 2 cut(s) | 354, 769 |
| DpnI | GATC | 5 cut(s) | 106, 219, 408, 618, 723 |
| DpnII | GATC | 5 cut(s) | 104, 217, 406, 616, 721 |
| DraI | TTTAAA | 1 cut(s) | 489 |
| Eam1104I | CTCTTC | 5 cut(s) | 243, 266, 282, 470, 513 |
| EarI | CTCTTC | 5 cut(s) | 243, 266, 282, 470, 513 |
| Ecl136II | GAGCTC | 1 cut(s) | 460 |
| Eco24I | GRGCYC | 1 cut(s) | 462 |
| Eco31I | GGTCTC | 1 cut(s) | 148 |
| Eco53kI | GAGCTC | 1 cut(s) | 460 |
| Eco88I | CYCGRG | 1 cut(s) | 158 |
| EcoICRI | GAGCTC | 1 cut(s) | 460 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 958 |
| EcoRII | CCWGG | 1 cut(s) | 166 |
| EcoT38I | GRGCYC | 1 cut(s) | 462 |
| Esp3I | CGTCTC | 2 cut(s) | 617, 772 |
| FaeI | CATG | 6 cut(s) | 530, 592, 737, 916, 989, 1050 |
| FaqI | GGGAC | 1 cut(s) | 903 |
| FatI | CATG | 6 cut(s) | 526, 588, 733, 912, 985, 1046 |
| FbaI | TGATCA | 1 cut(s) | 406 |
| Fnu4HI | GCNGC | 7 cut(s) | 329, 396, 419, 501, 633, 897, 1091 |
| FokI | GGATG | 3 cut(s) | 150, 833, 940 |
| FriOI | GRGCYC | 1 cut(s) | 462 |
| Fsp4HI | GCNGC | 7 cut(s) | 329, 396, 419, 501, 633, 897, 1091 |
| FspBI | CTAG | 2 cut(s) | 1020, 1025 |
| GlaI | GCGC | 1 cut(s) | 764 |
| GluI | GCNGC | 7 cut(s) | 329, 396, 419, 501, 633, 897, 1091 |
| GsuI | CTGGAG | 1 cut(s) | 641 |
| HaeIII | GGCC | 2 cut(s) | 899, 1059 |
| HapII | CCGG | 4 cut(s) | 449, 1060, 1076, 1097 |
| HgaI | GACGC | 2 cut(s) | 754, 851 |
| HhaI | GCGC | 1 cut(s) | 765 |
| Hin1I | GRCGYC | 1 cut(s) | 843 |
| Hin1II | CATG | 6 cut(s) | 530, 592, 737, 916, 989, 1050 |
| Hin6I | GCGC | 1 cut(s) | 763 |
| HinP1I | GCGC | 1 cut(s) | 763 |
| HinfI | GANTC | 4 cut(s) | 95, 428, 523, 948 |
| HpaII | CCGG | 4 cut(s) | 449, 1060, 1076, 1097 |
| HphI | GGTGA | 4 cut(s) | 19, 423, 467, 1090 |
| Hpy166II | GTNNAC | 3 cut(s) | 650, 670, 862 |
| Hpy188I | TCNGA | 2 cut(s) | 100, 127 |
| Hpy188III | TCNNGA | 6 cut(s) | 449, 527, 536, 620, 1025, 1097 |
| Hpy8I | GTNNAC | 3 cut(s) | 650, 670, 862 |
| Hpy99I | CGWCG | 2 cut(s) | 234, 845 |
| HpyAV | CCTTC | 6 cut(s) | 286, 533, 811, 938, 986, 1058 |
| HpyCH4III | ACNGT | 4 cut(s) | 256, 455, 835, 1105 |
| HpyCH4IV | ACGT | 2 cut(s) | 858, 1082 |
| HpyCH4V | TGCA | 9 cut(s) | 55, 308, 365, 386, 467, 500, 640, 713, 1090 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 383, 392 |
| HpyF3I | CTNAG | 2 cut(s) | 354, 769 |
| HpySE526I | ACGT | 2 cut(s) | 858, 1082 |
| Hsp92I | GRCGYC | 1 cut(s) | 843 |
| Hsp92II | CATG | 6 cut(s) | 530, 592, 737, 916, 989, 1050 |
| HspAI | GCGC | 1 cut(s) | 763 |
| Kpn2I | TCCGGA | 2 cut(s) | 448, 1096 |
| Ksp22I | TGATCA | 1 cut(s) | 406 |
| Kzo9I | GATC | 5 cut(s) | 104, 217, 406, 616, 721 |
| LmnI | GCTCC | 3 cut(s) | 358, 598, 978 |
| Lsp1109I | GCAGC | 5 cut(s) | 340, 405, 512, 619, 1102 |
| LweI | GCATC | 4 cut(s) | 172, 487, 722, 784 |
| MaeI | CTAG | 2 cut(s) | 1020, 1025 |
| MaeII | ACGT | 2 cut(s) | 858, 1082 |
| MaeIII | GTNAC | 6 cut(s) | 32, 429, 553, 801, 829, 1078 |
| MalI | GATC | 5 cut(s) | 106, 219, 408, 618, 723 |
| MboI | GATC | 5 cut(s) | 104, 217, 406, 616, 721 |
| MboII | GAAGA | 6 cut(s) | 260, 283, 299, 484, 487, 530 |
| MflI | RGATCY | 1 cut(s) | 616 |
| MhlI | GDGCHC | 2 cut(s) | 138, 462 |
| MluCI | AATT | 4 cut(s) | 72, 389, 402, 693 |
| MlyI | GAGTC | 3 cut(s) | 104, 437, 957 |
| MmeI | TCCRAC | 1 cut(s) | 166 |
| MroI | TCCGGA | 2 cut(s) | 448, 1096 |
| MroXI | GAANNNNTTC | 1 cut(s) | 300 |
| MseI | TTAA | 3 cut(s) | 75, 83, 488 |
| MslI | CAYNNNNRTG | 1 cut(s) | 645 |
| MspA1I | CMGCKG | 2 cut(s) | 503, 727 |
| MspI | CCGG | 4 cut(s) | 449, 1060, 1076, 1097 |
| MspR9I | CCNGG | 3 cut(s) | 168, 1061, 1076 |
| Mva1269I | GAATGC | 1 cut(s) | 1034 |
| MvaI | CCWGG | 1 cut(s) | 168 |
| MvnI | CGCG | 1 cut(s) | 765 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 383, 392 |
| NciI | CCSGG | 2 cut(s) | 1061, 1076 |
| NdeII | GATC | 5 cut(s) | 104, 217, 406, 616, 721 |
| NlaIII | CATG | 6 cut(s) | 530, 592, 737, 916, 989, 1050 |
| NlaIV | GGNNCC | 3 cut(s) | 545, 594, 974 |
| NmuCI | GTSAC | 3 cut(s) | 429, 829, 1078 |
| NspI | RCATGY | 2 cut(s) | 989, 1050 |
| PagI | TCATGA | 1 cut(s) | 526 |
| PciI | ACATGT | 1 cut(s) | 985 |
| PctI | GAATGC | 1 cut(s) | 1034 |
| PdmI | GAANNNNTTC | 1 cut(s) | 300 |
| PfeI | GAWTC | 1 cut(s) | 523 |
| PflFI | GACNNNGTC | 1 cut(s) | 857 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1039 |
| PkrI | GCNGC | 7 cut(s) | 330, 397, 420, 502, 634, 898, 1092 |
| PleI | GAGTC | 3 cut(s) | 103, 436, 956 |
| PpsI | GAGTC | 3 cut(s) | 103, 436, 956 |
| PscI | ACATGT | 1 cut(s) | 985 |
| Psp124BI | GAGCTC | 1 cut(s) | 462 |
| Psp6I | CCWGG | 1 cut(s) | 166 |
| PspGI | CCWGG | 1 cut(s) | 166 |
| PspN4I | GGNNCC | 3 cut(s) | 545, 594, 974 |
| PspPI | GGNCC | 1 cut(s) | 898 |
| PsuI | RGATCY | 1 cut(s) | 616 |
| PsyI | GACNNNGTC | 1 cut(s) | 857 |
| PvuII | CAGCTG | 2 cut(s) | 503, 727 |
| RsaI | GTAC | 2 cut(s) | 177, 876 |
| RsaNI | GTAC | 2 cut(s) | 176, 875 |
| RseI | CAYNNNNRTG | 1 cut(s) | 645 |
| SacI | GAGCTC | 1 cut(s) | 462 |
| SaqAI | TTAA | 3 cut(s) | 75, 83, 488 |
| SatI | GCNGC | 7 cut(s) | 329, 396, 419, 501, 633, 897, 1091 |
| Sau3AI | GATC | 5 cut(s) | 104, 217, 406, 616, 721 |
| Sau96I | GGNCC | 1 cut(s) | 898 |
| SchI | GAGTC | 3 cut(s) | 104, 437, 957 |
| ScrFI | CCNGG | 3 cut(s) | 168, 1061, 1076 |
| SduI | GDGCHC | 2 cut(s) | 138, 462 |
| SfaNI | GCATC | 4 cut(s) | 172, 487, 722, 784 |
| SfcI | CTRYAG | 1 cut(s) | 684 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 645 |
| Sse9I | AATT | 4 cut(s) | 72, 389, 402, 693 |
| SsiI | CCGC | 4 cut(s) | 395, 606, 635, 896 |
| SspI | AATATT | 1 cut(s) | 871 |
| SspMI | CTAG | 2 cut(s) | 1020, 1025 |
| SstI | GAGCTC | 1 cut(s) | 462 |
| StyD4I | CCNGG | 3 cut(s) | 166, 1059, 1074 |
| TaaI | ACNGT | 4 cut(s) | 256, 455, 835, 1105 |
| TaiI | ACGT | 2 cut(s) | 861, 1085 |
| TaqI | TCGA | 4 cut(s) | 107, 567, 716, 778 |
| TasI | AATT | 4 cut(s) | 72, 389, 402, 693 |
| TatI | WGTACW | 1 cut(s) | 874 |
| TauI | GCSGC | 2 cut(s) | 398, 899 |
| TfiI | GAWTC | 1 cut(s) | 523 |
| Tru1I | TTAA | 3 cut(s) | 75, 83, 488 |
| Tru9I | TTAA | 3 cut(s) | 75, 83, 488 |
| TscAI | CASTG | 4 cut(s) | 261, 474, 819, 838 |
| TseFI | GTSAC | 3 cut(s) | 429, 829, 1078 |
| TseI | GCWGC | 5 cut(s) | 328, 418, 500, 632, 1090 |
| Tsp45I | GTSAC | 3 cut(s) | 429, 829, 1078 |
| TspDTI | ATGAA | 1 cut(s) | 543 |
| TspRI | CASTG | 4 cut(s) | 261, 474, 819, 838 |
| Tth111I | GACNNNGTC | 1 cut(s) | 857 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1039 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 958 |
| XbaI | TCTAGA | 1 cut(s) | 1024 |
| XceI | RCATGY | 2 cut(s) | 989, 1050 |
| XmnI | GAANNNNTTC | 1 cut(s) | 300 |
| XspI | CTAG | 2 cut(s) | 1020, 1025 |