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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 198 |
| Acc65I | GGTACC | 1 cut(s) | 171 |
| AccB1I | GGYRCC | 1 cut(s) | 171 |
| AciI | CCGC | 2 cut(s) | 413, 447 |
| AclWI | GGATC | 1 cut(s) | 112 |
| AcsI | RAATTY | 1 cut(s) | 406 |
| AcuI | CTGAAG | 1 cut(s) | 87 |
| AfaI | GTAC | 3 cut(s) | 164, 173, 452 |
| AjnI | CCWGG | 1 cut(s) | 310 |
| AlwI | GGATC | 1 cut(s) | 112 |
| Ama87I | CYCGRG | 1 cut(s) | 340 |
| AoxI | GGCC | 3 cut(s) | 273, 313, 382 |
| ApaI | GGGCCC | 1 cut(s) | 277 |
| ApeKI | GCWGC | 2 cut(s) | 531, 534 |
| ApoI | RAATTY | 1 cut(s) | 406 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 82, 114 |
| Asp718I | GGTACC | 1 cut(s) | 171 |
| AspS9I | GGNCC | 3 cut(s) | 273, 274, 382 |
| AsuHPI | GGTGA | 2 cut(s) | 29, 604 |
| AvaI | CYCGRG | 1 cut(s) | 340 |
| BaeGI | GKGCMC | 1 cut(s) | 277 |
| BanI | GGYRCC | 1 cut(s) | 171 |
| BanII | GRGCYC | 1 cut(s) | 277 |
| BbsI | GAAGAC | 1 cut(s) | 602 |
| BbvI | GCAGC | 2 cut(s) | 543, 546 |
| BccI | CCATC | 2 cut(s) | 29, 53 |
| BciT130I | CCWGG | 1 cut(s) | 312 |
| BclI | TGATCA | 1 cut(s) | 559 |
| BisI | GCNGC | 2 cut(s) | 532, 535 |
| BlsI | GCNGC | 2 cut(s) | 533, 536 |
| Bme1390I | CCNGG | 1 cut(s) | 312 |
| BmeT110I | CYCGRG | 1 cut(s) | 340 |
| BmgT120I | GGNCC | 3 cut(s) | 273, 274, 382 |
| BmiI | GGNNCC | 3 cut(s) | 63, 173, 275 |
| BmrFI | CCNGG | 1 cut(s) | 312 |
| BmsI | GCATC | 1 cut(s) | 450 |
| BpiI | GAAGAC | 1 cut(s) | 602 |
| BsaBI | GATNNNNATC | 1 cut(s) | 558 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 434, 464 |
| Bse1I | ACTGG | 1 cut(s) | 184 |
| Bse3DI | GCAATG | 1 cut(s) | 153 |
| Bse8I | GATNNNNATC | 1 cut(s) | 558 |
| BseBI | CCWGG | 1 cut(s) | 312 |
| BseJI | GATNNNNATC | 1 cut(s) | 558 |
| BseMI | GCAATG | 1 cut(s) | 153 |
| BseNI | ACTGG | 1 cut(s) | 184 |
| BseRI | GAGGAG | 2 cut(s) | 414, 538 |
| BseSI | GKGCMC | 1 cut(s) | 277 |
| BseXI | GCAGC | 2 cut(s) | 543, 546 |
| BshFI | GGCC | 3 cut(s) | 275, 315, 384 |
| BshNI | GGYRCC | 1 cut(s) | 171 |
| BsiHKCI | CYCGRG | 1 cut(s) | 340 |
| BsmI | GAATGC | 1 cut(s) | 417 |
| BsnI | GGCC | 3 cut(s) | 275, 315, 384 |
| BsoBI | CYCGRG | 1 cut(s) | 340 |
| Bsp120I | GGGCCC | 1 cut(s) | 273 |
| Bsp1286I | GDGCHC | 1 cut(s) | 277 |
| Bsp143I | GATC | 2 cut(s) | 104, 559 |
| BspACI | CCGC | 2 cut(s) | 413, 447 |
| BspANI | GGCC | 3 cut(s) | 275, 315, 384 |
| BspLI | GGNNCC | 3 cut(s) | 63, 173, 275 |
| BspPI | GGATC | 1 cut(s) | 112 |
| BspT107I | GGYRCC | 1 cut(s) | 171 |
| BsrDI | GCAATG | 1 cut(s) | 153 |
| BsrI | ACTGG | 1 cut(s) | 184 |
| BssMI | GATC | 2 cut(s) | 104, 559 |
| Bst2UI | CCWGG | 1 cut(s) | 312 |
| Bst4CI | ACNGT | 1 cut(s) | 268 |
| BstC8I | GCNNGC | 2 cut(s) | 127, 415 |
| BstKTI | GATC | 2 cut(s) | 107, 562 |
| BstMBI | GATC | 2 cut(s) | 104, 559 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 469 |
| BstNI | CCWGG | 1 cut(s) | 312 |
| BstNSI | RCATGY | 1 cut(s) | 472 |
| BstSCI | CCNGG | 1 cut(s) | 310 |
| BstSLI | GKGCMC | 1 cut(s) | 277 |
| BstV1I | GCAGC | 2 cut(s) | 543, 546 |
| BstV2I | GAAGAC | 1 cut(s) | 602 |
| BsuRI | GGCC | 3 cut(s) | 275, 315, 384 |
| Cac8I | GCNNGC | 2 cut(s) | 127, 415 |
| Cfr13I | GGNCC | 3 cut(s) | 273, 274, 382 |
| Csp6I | GTAC | 3 cut(s) | 163, 172, 451 |
| CviAII | CATG | 5 cut(s) | 58, 130, 211, 325, 469 |
| CviJI | RGCY | 5 cut(s) | 275, 295, 315, 384, 537 |
| CviKI_1 | RGCY | 5 cut(s) | 275, 295, 315, 384, 537 |
| CviQI | GTAC | 3 cut(s) | 163, 172, 451 |
| DpnI | GATC | 2 cut(s) | 106, 561 |
| DpnII | GATC | 2 cut(s) | 104, 559 |
| Eco24I | GRGCYC | 1 cut(s) | 277 |
| Eco32I | GATATC | 1 cut(s) | 478 |
| Eco57I | CTGAAG | 1 cut(s) | 87 |
| Eco88I | CYCGRG | 1 cut(s) | 340 |
| EcoO109I | RGGNCCY | 1 cut(s) | 273 |
| EcoRII | CCWGG | 1 cut(s) | 310 |
| EcoRV | GATATC | 1 cut(s) | 478 |
| EcoT38I | GRGCYC | 1 cut(s) | 277 |
| FaeI | CATG | 5 cut(s) | 61, 133, 214, 328, 472 |
| FatI | CATG | 5 cut(s) | 57, 129, 210, 324, 468 |
| FauI | CCCGC | 2 cut(s) | 406, 440 |
| FbaI | TGATCA | 1 cut(s) | 559 |
| Fnu4HI | GCNGC | 2 cut(s) | 532, 535 |
| FriOI | GRGCYC | 1 cut(s) | 277 |
| Fsp4HI | GCNGC | 2 cut(s) | 532, 535 |
| GluI | GCNGC | 2 cut(s) | 532, 535 |
| HaeIII | GGCC | 3 cut(s) | 275, 315, 384 |
| Hin1II | CATG | 5 cut(s) | 61, 133, 214, 328, 472 |
| HincII | GTYRAC | 2 cut(s) | 189, 226 |
| HindII | GTYRAC | 2 cut(s) | 189, 226 |
| HinfI | GANTC | 1 cut(s) | 20 |
| HphI | GGTGA | 2 cut(s) | 29, 604 |
| Hpy166II | GTNNAC | 4 cut(s) | 163, 189, 208, 226 |
| Hpy188I | TCNGA | 1 cut(s) | 109 |
| Hpy188III | TCNNGA | 2 cut(s) | 84, 234 |
| Hpy8I | GTNNAC | 4 cut(s) | 163, 189, 208, 226 |
| HpyAV | CCTTC | 2 cut(s) | 240, 373 |
| HpyCH4III | ACNGT | 1 cut(s) | 268 |
| HpyCH4IV | ACGT | 1 cut(s) | 599 |
| HpyCH4V | TGCA | 5 cut(s) | 26, 125, 153, 218, 347 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 469 |
| HpySE526I | ACGT | 1 cut(s) | 599 |
| Hsp92II | CATG | 5 cut(s) | 61, 133, 214, 328, 472 |
| KpnI | GGTACC | 1 cut(s) | 175 |
| Ksp22I | TGATCA | 1 cut(s) | 559 |
| Kzo9I | GATC | 2 cut(s) | 104, 559 |
| LpnPI | CCDG | 5 cut(s) | 78, 179, 197, 297, 324 |
| Lsp1109I | GCAGC | 2 cut(s) | 543, 546 |
| LweI | GCATC | 1 cut(s) | 450 |
| MaeII | ACGT | 1 cut(s) | 599 |
| MalI | GATC | 2 cut(s) | 106, 561 |
| MboI | GATC | 2 cut(s) | 104, 559 |
| MboII | GAAGA | 4 cut(s) | 385, 388, 563, 607 |
| MhlI | GDGCHC | 1 cut(s) | 277 |
| MluCI | AATT | 3 cut(s) | 148, 237, 406 |
| MlyI | GAGTC | 1 cut(s) | 29 |
| MnlI | CCTC | 8 cut(s) | 162, 245, 264, 432, 435, 478, 516, 521 |
| MseI | TTAA | 1 cut(s) | 360 |
| MslI | CAYNNNNRTG | 1 cut(s) | 158 |
| MspR9I | CCNGG | 1 cut(s) | 312 |
| Mva1269I | GAATGC | 1 cut(s) | 417 |
| MvaI | CCWGG | 1 cut(s) | 312 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 469 |
| NdeII | GATC | 2 cut(s) | 104, 559 |
| NlaIII | CATG | 5 cut(s) | 61, 133, 214, 328, 472 |
| NlaIV | GGNNCC | 3 cut(s) | 63, 173, 275 |
| NspI | RCATGY | 1 cut(s) | 472 |
| PctI | GAATGC | 1 cut(s) | 417 |
| PkrI | GCNGC | 2 cut(s) | 533, 536 |
| PleI | GAGTC | 1 cut(s) | 28 |
| PpsI | GAGTC | 1 cut(s) | 28 |
| PsiI | TTATAA | 1 cut(s) | 198 |
| Psp6I | CCWGG | 1 cut(s) | 310 |
| PspGI | CCWGG | 1 cut(s) | 310 |
| PspN4I | GGNNCC | 3 cut(s) | 63, 173, 275 |
| PspOMI | GGGCCC | 1 cut(s) | 273 |
| PspPI | GGNCC | 3 cut(s) | 273, 274, 382 |
| RsaI | GTAC | 3 cut(s) | 164, 173, 452 |
| RsaNI | GTAC | 3 cut(s) | 163, 172, 451 |
| RseI | CAYNNNNRTG | 1 cut(s) | 158 |
| SaqAI | TTAA | 1 cut(s) | 360 |
| SatI | GCNGC | 2 cut(s) | 532, 535 |
| Sau3AI | GATC | 2 cut(s) | 104, 559 |
| Sau96I | GGNCC | 3 cut(s) | 273, 274, 382 |
| SchI | GAGTC | 1 cut(s) | 29 |
| ScrFI | CCNGG | 1 cut(s) | 312 |
| SduI | GDGCHC | 1 cut(s) | 277 |
| SetI | ASST | 5 cut(s) | 67, 173, 177, 256, 602 |
| SfaNI | GCATC | 1 cut(s) | 450 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 158 |
| Sse9I | AATT | 3 cut(s) | 148, 237, 406 |
| SsiI | CCGC | 2 cut(s) | 413, 447 |
| SspI | AATATT | 1 cut(s) | 321 |
| StyD4I | CCNGG | 1 cut(s) | 310 |
| TaaI | ACNGT | 1 cut(s) | 268 |
| TaiI | ACGT | 1 cut(s) | 602 |
| TaqI | TCGA | 1 cut(s) | 85 |
| TasI | AATT | 3 cut(s) | 148, 237, 406 |
| Tru1I | TTAA | 1 cut(s) | 360 |
| Tru9I | TTAA | 1 cut(s) | 360 |
| TseI | GCWGC | 2 cut(s) | 531, 534 |
| TspDTI | ATGAA | 2 cut(s) | 43, 313 |
| XapI | RAATTY | 1 cut(s) | 406 |
| XceI | RCATGY | 1 cut(s) | 472 |