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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 14, 26, 39 |
| AcoI | YGGCCR | 2 cut(s) | 532, 933 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AfaI | GTAC | 2 cut(s) | 113, 849 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 480, 889 |
| AflII | CTTAAG | 1 cut(s) | 410 |
| AgsI | TTSAA | 5 cut(s) | 233, 320, 433, 513, 738 |
| AjnI | CCWGG | 1 cut(s) | 534 |
| Alw26I | GTCTC | 1 cut(s) | 844 |
| AlwI | GGATC | 3 cut(s) | 14, 26, 39 |
| AoxI | GGCC | 3 cut(s) | 532, 933, 1113 |
| ApeKI | GCWGC | 2 cut(s) | 278, 1129 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 128, 160 |
| AseI | ATTAAT | 1 cut(s) | 624 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 508 |
| AspLEI | GCGC | 1 cut(s) | 303 |
| AspS9I | GGNCC | 3 cut(s) | 667, 938, 1113 |
| AvaII | GGWCC | 2 cut(s) | 667, 938 |
| BaeGI | GKGCMC | 1 cut(s) | 700 |
| BalI | TGGCCA | 1 cut(s) | 534 |
| BamHI | GGATCC | 1 cut(s) | 31 |
| BbvCI | CCTCAGC | 1 cut(s) | 171 |
| BbvI | GCAGC | 2 cut(s) | 265, 1141 |
| BccI | CCATC | 3 cut(s) | 47, 776, 1096 |
| BciT130I | CCWGG | 1 cut(s) | 536 |
| BcoDI | GTCTC | 1 cut(s) | 844 |
| BfaI | CTAG | 3 cut(s) | 68, 500, 615 |
| BfmI | CTRYAG | 2 cut(s) | 855, 1127 |
| BfoI | RGCGCY | 1 cut(s) | 304 |
| BfrI | CTTAAG | 1 cut(s) | 410 |
| BglII | AGATCT | 1 cut(s) | 1051 |
| BisI | GCNGC | 2 cut(s) | 279, 1130 |
| BlpI | GCTNAGC | 1 cut(s) | 656 |
| BlsI | GCNGC | 2 cut(s) | 280, 1131 |
| Bme1390I | CCNGG | 1 cut(s) | 536 |
| Bme18I | GGWCC | 2 cut(s) | 667, 938 |
| BmgT120I | GGNCC | 3 cut(s) | 667, 938, 1113 |
| BmiI | GGNNCC | 4 cut(s) | 33, 600, 669, 1273 |
| BmrFI | CCNGG | 1 cut(s) | 536 |
| BmsI | GCATC | 2 cut(s) | 630, 904 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1186 |
| BpmI | CTGGAG | 1 cut(s) | 261 |
| Bpu10I | CCTNAGC | 4 cut(s) | 171, 214, 644, 870 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 656 |
| BsaJI | CCNNGG | 2 cut(s) | 576, 805 |
| BsaWI | WCCGGW | 1 cut(s) | 133 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 252, 282 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 480, 889 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| Bse3DI | GCAATG | 2 cut(s) | 656, 1067 |
| BseBI | CCWGG | 1 cut(s) | 536 |
| BseDI | CCNNGG | 2 cut(s) | 576, 805 |
| BseGI | GGATG | 7 cut(s) | 40, 55, 448, 645, 868, 898, 1088 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 480, 889 |
| BseMI | GCAATG | 2 cut(s) | 656, 1067 |
| BseMII | CTCAG | 4 cut(s) | 162, 444, 647, 1124 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseRI | GAGGAG | 1 cut(s) | 611 |
| BseSI | GKGCMC | 1 cut(s) | 700 |
| BseXI | GCAGC | 2 cut(s) | 265, 1141 |
| BsgI | GTGCAG | 1 cut(s) | 216 |
| BshFI | GGCC | 3 cut(s) | 534, 935, 1115 |
| BsiSI | CCGG | 2 cut(s) | 134, 936 |
| BslFI | GGGAC | 4 cut(s) | 442, 603, 653, 937 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 480, 889 |
| BsmAI | GTCTC | 1 cut(s) | 844 |
| BsmFI | GGGAC | 4 cut(s) | 442, 603, 653, 937 |
| BsnI | GGCC | 3 cut(s) | 534, 935, 1115 |
| Bsp1286I | GDGCHC | 1 cut(s) | 700 |
| Bsp143I | GATC | 5 cut(s) | 3, 19, 31, 681, 1051 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 656 |
| Bsp19I | CCATGG | 1 cut(s) | 805 |
| BspANI | GGCC | 3 cut(s) | 534, 935, 1115 |
| BspCNI | CTCAG | 4 cut(s) | 163, 445, 648, 1125 |
| BspHI | TCATGA | 1 cut(s) | 592 |
| BspLI | GGNNCC | 4 cut(s) | 33, 600, 669, 1273 |
| BspMAI | CTGCAG | 1 cut(s) | 1131 |
| BspPI | GGATC | 3 cut(s) | 14, 26, 39 |
| BspTI | CTTAAG | 1 cut(s) | 410 |
| BsrDI | GCAATG | 2 cut(s) | 656, 1067 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssECI | CCNNGG | 2 cut(s) | 576, 805 |
| BssMI | GATC | 5 cut(s) | 3, 19, 31, 681, 1051 |
| BssT1I | CCWWGG | 2 cut(s) | 576, 805 |
| Bst2UI | CCWGG | 1 cut(s) | 536 |
| Bst4CI | ACNGT | 3 cut(s) | 328, 565, 971 |
| Bst6I | CTCTTC | 3 cut(s) | 42, 396, 417 |
| BstAFI | CTTAAG | 1 cut(s) | 410 |
| BstC8I | GCNNGC | 3 cut(s) | 532, 797, 987 |
| BstDEI | CTNAG | 8 cut(s) | 115, 171, 214, 453, 644, 656, 870, 1133 |
| BstDSI | CCRYGG | 1 cut(s) | 805 |
| BstF5I | GGATG | 7 cut(s) | 40, 55, 448, 645, 868, 898, 1088 |
| BstH2I | RGCGCY | 1 cut(s) | 304 |
| BstHHI | GCGC | 1 cut(s) | 303 |
| BstKTI | GATC | 5 cut(s) | 6, 22, 34, 684, 1054 |
| BstMAI | GTCTC | 1 cut(s) | 844 |
| BstMBI | GATC | 5 cut(s) | 3, 19, 31, 681, 1051 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 307, 536 |
| BstNI | CCWGG | 1 cut(s) | 536 |
| BstNSI | RCATGY | 1 cut(s) | 1187 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1186 |
| BstSCI | CCNGG | 1 cut(s) | 534 |
| BstSFI | CTRYAG | 2 cut(s) | 855, 1127 |
| BstSLI | GKGCMC | 1 cut(s) | 700 |
| BstV1I | GCAGC | 2 cut(s) | 265, 1141 |
| BstX2I | RGATCY | 2 cut(s) | 31, 1051 |
| BstYI | RGATCY | 2 cut(s) | 31, 1051 |
| BsuRI | GGCC | 3 cut(s) | 534, 935, 1115 |
| BtgI | CCRYGG | 1 cut(s) | 805 |
| BtsCI | GGATG | 7 cut(s) | 40, 55, 448, 645, 868, 898, 1088 |
| BtsI | GCAGTG | 1 cut(s) | 1124 |
| BtsIMutI | CAGTG | 1 cut(s) | 1124 |
| Cac8I | GCNNGC | 3 cut(s) | 532, 797, 987 |
| CciI | TCATGA | 1 cut(s) | 592 |
| CfoI | GCGC | 1 cut(s) | 303 |
| Cfr13I | GGNCC | 3 cut(s) | 667, 938, 1113 |
| CseI | GACGC | 1 cut(s) | 1176 |
| Csp6I | GTAC | 2 cut(s) | 112, 848 |
| CviAII | CATG | 6 cut(s) | 593, 806, 949, 1060, 1184, 1240 |
| CviQI | GTAC | 2 cut(s) | 112, 848 |
| DdeI | CTNAG | 8 cut(s) | 115, 171, 214, 453, 644, 656, 870, 1133 |
| DpnI | GATC | 5 cut(s) | 5, 21, 33, 683, 1053 |
| DpnII | GATC | 5 cut(s) | 3, 19, 31, 681, 1051 |
| DraI | TTTAAA | 1 cut(s) | 156 |
| EaeI | YGGCCR | 2 cut(s) | 532, 933 |
| Eam1104I | CTCTTC | 3 cut(s) | 42, 396, 417 |
| EarI | CTCTTC | 3 cut(s) | 42, 396, 417 |
| Eco130I | CCWWGG | 2 cut(s) | 576, 805 |
| Eco47I | GGWCC | 2 cut(s) | 667, 938 |
| EcoRII | CCWGG | 1 cut(s) | 534 |
| EcoT14I | CCWWGG | 2 cut(s) | 576, 805 |
| ErhI | CCWWGG | 2 cut(s) | 576, 805 |
| FaeI | CATG | 6 cut(s) | 596, 809, 952, 1063, 1187, 1243 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 393, 425 |
| FaqI | GGGAC | 4 cut(s) | 442, 603, 653, 937 |
| FatI | CATG | 6 cut(s) | 592, 805, 948, 1059, 1183, 1239 |
| Fnu4HI | GCNGC | 2 cut(s) | 279, 1130 |
| FokI | GGATG | 7 cut(s) | 27, 62, 455, 652, 875, 905, 1075 |
| Fsp4HI | GCNGC | 2 cut(s) | 279, 1130 |
| FspBI | CTAG | 3 cut(s) | 68, 500, 615 |
| GlaI | GCGC | 1 cut(s) | 302 |
| GluI | GCNGC | 2 cut(s) | 279, 1130 |
| GsuI | CTGGAG | 1 cut(s) | 261 |
| HaeII | RGCGCY | 1 cut(s) | 304 |
| HaeIII | GGCC | 3 cut(s) | 534, 935, 1115 |
| HapII | CCGG | 2 cut(s) | 134, 936 |
| HgaI | GACGC | 1 cut(s) | 1176 |
| HhaI | GCGC | 1 cut(s) | 303 |
| Hin1II | CATG | 6 cut(s) | 596, 809, 952, 1063, 1187, 1243 |
| Hin6I | GCGC | 1 cut(s) | 301 |
| HinP1I | GCGC | 1 cut(s) | 301 |
| HincII | GTYRAC | 1 cut(s) | 210 |
| HindII | GTYRAC | 1 cut(s) | 210 |
| HindIII | AAGCTT | 1 cut(s) | 872 |
| HinfI | GANTC | 2 cut(s) | 455, 1348 |
| HpaII | CCGG | 2 cut(s) | 134, 936 |
| Hpy166II | GTNNAC | 2 cut(s) | 210, 1237 |
| Hpy188I | TCNGA | 5 cut(s) | 45, 345, 569, 1181, 1247 |
| Hpy188III | TCNNGA | 9 cut(s) | 17, 230, 495, 593, 685, 841, 911, 922, 1055 |
| Hpy8I | GTNNAC | 2 cut(s) | 210, 1237 |
| HpyAV | CCTTC | 2 cut(s) | 40, 433 |
| HpyCH4III | ACNGT | 3 cut(s) | 328, 565, 971 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 307, 536 |
| HpyF3I | CTNAG | 8 cut(s) | 115, 171, 214, 453, 644, 656, 870, 1133 |
| Hsp92II | CATG | 6 cut(s) | 596, 809, 952, 1063, 1187, 1243 |
| HspAI | GCGC | 1 cut(s) | 301 |
| Kzo9I | GATC | 5 cut(s) | 3, 19, 31, 681, 1051 |
| LmnI | GCTCC | 1 cut(s) | 598 |
| Lsp1109I | GCAGC | 2 cut(s) | 265, 1141 |
| LweI | GCATC | 2 cut(s) | 630, 904 |
| MaeI | CTAG | 3 cut(s) | 68, 500, 615 |
| MalI | GATC | 5 cut(s) | 5, 21, 33, 683, 1053 |
| MboI | GATC | 5 cut(s) | 3, 19, 31, 681, 1051 |
| MfeI | CAATTG | 3 cut(s) | 705, 722, 738 |
| MflI | RGATCY | 2 cut(s) | 31, 1051 |
| MhlI | GDGCHC | 1 cut(s) | 700 |
| MlsI | TGGCCA | 1 cut(s) | 534 |
| MluNI | TGGCCA | 1 cut(s) | 534 |
| MlyI | GAGTC | 1 cut(s) | 464 |
| MmeI | TCCRAC | 2 cut(s) | 581, 1225 |
| Mox20I | TGGCCA | 1 cut(s) | 534 |
| MroXI | GAANNNNTTC | 1 cut(s) | 508 |
| MscI | TGGCCA | 1 cut(s) | 534 |
| MseI | TTAA | 8 cut(s) | 155, 182, 288, 335, 411, 624, 1095, 1218 |
| Msp20I | TGGCCA | 1 cut(s) | 534 |
| MspA1I | CMGCKG | 2 cut(s) | 965, 1132 |
| MspCI | CTTAAG | 1 cut(s) | 410 |
| MspI | CCGG | 2 cut(s) | 134, 936 |
| MspR9I | CCNGG | 1 cut(s) | 536 |
| MunI | CAATTG | 3 cut(s) | 705, 722, 738 |
| MvaI | CCWGG | 1 cut(s) | 536 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 307, 536 |
| NcoI | CCATGG | 1 cut(s) | 805 |
| NdeII | GATC | 5 cut(s) | 3, 19, 31, 681, 1051 |
| NlaIII | CATG | 6 cut(s) | 596, 809, 952, 1063, 1187, 1243 |
| NlaIV | GGNNCC | 4 cut(s) | 33, 600, 669, 1273 |
| NspI | RCATGY | 1 cut(s) | 1187 |
| PagI | TCATGA | 1 cut(s) | 592 |
| PdmI | GAANNNNTTC | 1 cut(s) | 508 |
| PfeI | GAWTC | 1 cut(s) | 1348 |
| PflFI | GACNNNGTC | 1 cut(s) | 1241 |
| PkrI | GCNGC | 2 cut(s) | 280, 1131 |
| PleI | GAGTC | 1 cut(s) | 463 |
| PpsI | GAGTC | 1 cut(s) | 463 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1186 |
| PshBI | ATTAAT | 1 cut(s) | 624 |
| Psp6I | CCWGG | 1 cut(s) | 534 |
| PspGI | CCWGG | 1 cut(s) | 534 |
| PspN4I | GGNNCC | 4 cut(s) | 33, 600, 669, 1273 |
| PspPI | GGNCC | 3 cut(s) | 667, 938, 1113 |
| PstI | CTGCAG | 1 cut(s) | 1131 |
| PsuI | RGATCY | 2 cut(s) | 31, 1051 |
| PsyI | GACNNNGTC | 1 cut(s) | 1241 |
| PvuII | CAGCTG | 2 cut(s) | 965, 1132 |
| RsaI | GTAC | 2 cut(s) | 113, 849 |
| RsaNI | GTAC | 2 cut(s) | 112, 848 |
| SaqAI | TTAA | 8 cut(s) | 155, 182, 288, 335, 411, 624, 1095, 1218 |
| SatI | GCNGC | 2 cut(s) | 279, 1130 |
| Sau3AI | GATC | 5 cut(s) | 3, 19, 31, 681, 1051 |
| Sau96I | GGNCC | 3 cut(s) | 667, 938, 1113 |
| SchI | GAGTC | 1 cut(s) | 464 |
| ScrFI | CCNGG | 1 cut(s) | 536 |
| SduI | GDGCHC | 1 cut(s) | 700 |
| SfaNI | GCATC | 2 cut(s) | 630, 904 |
| SfcI | CTRYAG | 2 cut(s) | 855, 1127 |
| SinI | GGWCC | 2 cut(s) | 667, 938 |
| SmlI | CTYRAG | 1 cut(s) | 410 |
| SmoI | CTYRAG | 1 cut(s) | 410 |
| SspI | AATATT | 1 cut(s) | 900 |
| SspMI | CTAG | 3 cut(s) | 68, 500, 615 |
| StyD4I | CCNGG | 1 cut(s) | 534 |
| StyI | CCWWGG | 2 cut(s) | 576, 805 |
| TaaI | ACNGT | 3 cut(s) | 328, 565, 971 |
| TaqI | TCGA | 2 cut(s) | 842, 1226 |
| TatI | WGTACW | 2 cut(s) | 111, 847 |
| TfiI | GAWTC | 1 cut(s) | 1348 |
| Tru1I | TTAA | 8 cut(s) | 155, 182, 288, 335, 411, 624, 1095, 1218 |
| Tru9I | TTAA | 8 cut(s) | 155, 182, 288, 335, 411, 624, 1095, 1218 |
| TscAI | CASTG | 1 cut(s) | 1131 |
| TseI | GCWGC | 2 cut(s) | 278, 1129 |
| TspDTI | ATGAA | 7 cut(s) | 29, 581, 642, 879, 909, 1096, 1182 |
| TspRI | CASTG | 1 cut(s) | 1131 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1241 |
| Vha464I | CTTAAG | 1 cut(s) | 410 |
| VpaK11BI | GGWCC | 2 cut(s) | 667, 938 |
| VspI | ATTAAT | 1 cut(s) | 624 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XceI | RCATGY | 1 cut(s) | 1187 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 728, 803 |
| XmnI | GAANNNNTTC | 1 cut(s) | 508 |
| XspI | CTAG | 3 cut(s) | 68, 500, 615 |