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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1193 |
| Acc65I | GGTACC | 1 cut(s) | 1248 |
| AccB1I | GGYRCC | 1 cut(s) | 1248 |
| AciI | CCGC | 2 cut(s) | 34, 881 |
| AclWI | GGATC | 2 cut(s) | 481, 1344 |
| AcsI | RAATTY | 2 cut(s) | 368, 1066 |
| AcuI | CTGAAG | 1 cut(s) | 1164 |
| AcyI | GRCGYC | 1 cut(s) | 90 |
| AfaI | GTAC | 3 cut(s) | 771, 1005, 1250 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 277 |
| AgsI | TTSAA | 5 cut(s) | 109, 556, 636, 1108, 1133 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 504 |
| AjnI | CCWGG | 2 cut(s) | 1341, 1387 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 264, 296 |
| AluBI | AGCT | 8 cut(s) | 170, 267, 434, 524, 587, 691, 827, 1055 |
| AluI | AGCT | 8 cut(s) | 170, 267, 434, 524, 587, 691, 827, 1055 |
| Alw21I | GWGCWC | 1 cut(s) | 1162 |
| Alw26I | GTCTC | 3 cut(s) | 269, 537, 916 |
| Alw44I | GTGCAC | 1 cut(s) | 1158 |
| AlwI | GGATC | 2 cut(s) | 481, 1344 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 914 |
| AoxI | GGCC | 4 cut(s) | 54, 64, 789, 1339 |
| ApaLI | GTGCAC | 1 cut(s) | 1158 |
| ApeKI | GCWGC | 3 cut(s) | 343, 431, 1052 |
| ApoI | RAATTY | 2 cut(s) | 368, 1066 |
| Asp718I | GGTACC | 1 cut(s) | 1248 |
| AspLEI | GCGC | 1 cut(s) | 1194 |
| AsuHPI | GGTGA | 4 cut(s) | 85, 968, 1106, 1117 |
| BaeGI | GKGCMC | 1 cut(s) | 1162 |
| BanI | GGYRCC | 1 cut(s) | 1248 |
| BbsI | GAAGAC | 1 cut(s) | 1017 |
| Bbv12I | GWGCWC | 1 cut(s) | 1162 |
| BbvI | GCAGC | 3 cut(s) | 355, 443, 1064 |
| BccI | CCATC | 4 cut(s) | 451, 560, 647, 1106 |
| BceAI | ACGGC | 1 cut(s) | 41 |
| BciT130I | CCWGG | 2 cut(s) | 1343, 1389 |
| BclI | TGATCA | 3 cut(s) | 706, 730, 814 |
| BcoDI | GTCTC | 3 cut(s) | 269, 537, 916 |
| BfaI | CTAG | 6 cut(s) | 68, 123, 435, 452, 884, 1178 |
| BisI | GCNGC | 3 cut(s) | 344, 432, 1053 |
| BlpI | GCTNAGC | 1 cut(s) | 692 |
| BlsI | GCNGC | 3 cut(s) | 345, 433, 1054 |
| Bme1390I | CCNGG | 2 cut(s) | 1343, 1389 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 504 |
| BmiI | GGNNCC | 1 cut(s) | 1250 |
| BmrFI | CCNGG | 2 cut(s) | 1343, 1389 |
| BmsI | GCATC | 1 cut(s) | 400 |
| BpiI | GAAGAC | 1 cut(s) | 1017 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 692 |
| BpuEI | CTTGAG | 2 cut(s) | 203, 998 |
| BsaHI | GRCGYC | 1 cut(s) | 90 |
| BsaJI | CCNNGG | 2 cut(s) | 61, 481 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 28, 58, 204, 234, 534, 564, 634, 664 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 277 |
| Bse1I | ACTGG | 2 cut(s) | 505, 1225 |
| BseBI | CCWGG | 2 cut(s) | 1343, 1389 |
| BseDI | CCNNGG | 2 cut(s) | 61, 481 |
| BseGI | GGATG | 5 cut(s) | 509, 571, 623, 1033, 1083 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 277 |
| BseMII | CTCAG | 3 cut(s) | 771, 1014, 1279 |
| BseNI | ACTGG | 2 cut(s) | 505, 1225 |
| BseRI | GAGGAG | 5 cut(s) | 655, 698, 701, 941, 1000 |
| BseSI | GKGCMC | 1 cut(s) | 1162 |
| BseXI | GCAGC | 3 cut(s) | 355, 443, 1064 |
| BshFI | GGCC | 4 cut(s) | 56, 66, 791, 1341 |
| BshNI | GGYRCC | 1 cut(s) | 1248 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1162 |
| BslFI | GGGAC | 1 cut(s) | 759 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 277 |
| BsmAI | GTCTC | 3 cut(s) | 269, 537, 916 |
| BsmBI | CGTCTC | 1 cut(s) | 269 |
| BsmFI | GGGAC | 1 cut(s) | 759 |
| BsmI | GAATGC | 1 cut(s) | 937 |
| BsnI | GGCC | 4 cut(s) | 56, 66, 791, 1341 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1162 |
| Bsp143I | GATC | 7 cut(s) | 324, 473, 706, 730, 814, 1015, 1349 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 692 |
| Bsp19I | CCATGG | 1 cut(s) | 61 |
| BspACI | CCGC | 2 cut(s) | 34, 881 |
| BspANI | GGCC | 4 cut(s) | 56, 66, 791, 1341 |
| BspCNI | CTCAG | 3 cut(s) | 772, 1015, 1278 |
| BspLI | GGNNCC | 1 cut(s) | 1250 |
| BspPI | GGATC | 2 cut(s) | 481, 1344 |
| BspT107I | GGYRCC | 1 cut(s) | 1248 |
| BsrI | ACTGG | 2 cut(s) | 505, 1225 |
| BssECI | CCNNGG | 2 cut(s) | 61, 481 |
| BssMI | GATC | 7 cut(s) | 324, 473, 706, 730, 814, 1015, 1349 |
| BssNI | GRCGYC | 1 cut(s) | 90 |
| BssT1I | CCWWGG | 2 cut(s) | 61, 481 |
| Bst2UI | CCWGG | 2 cut(s) | 1343, 1389 |
| Bst4CI | ACNGT | 4 cut(s) | 74, 97, 280, 838 |
| Bst6I | CTCTTC | 5 cut(s) | 17, 23, 303, 354, 977 |
| BstACI | GRCGYC | 1 cut(s) | 90 |
| BstC8I | GCNNGC | 2 cut(s) | 348, 1158 |
| BstDEI | CTNAG | 7 cut(s) | 134, 692, 780, 937, 1023, 1265, 1417 |
| BstDSI | CCRYGG | 1 cut(s) | 61 |
| BstF5I | GGATG | 5 cut(s) | 509, 571, 623, 1033, 1083 |
| BstHHI | GCGC | 1 cut(s) | 1194 |
| BstKTI | GATC | 7 cut(s) | 327, 476, 709, 733, 817, 1018, 1352 |
| BstMAI | GTCTC | 3 cut(s) | 269, 537, 916 |
| BstMBI | GATC | 7 cut(s) | 324, 473, 706, 730, 814, 1015, 1349 |
| BstNI | CCWGG | 2 cut(s) | 1343, 1389 |
| BstNSI | RCATGY | 2 cut(s) | 1090, 1192 |
| BstSCI | CCNGG | 2 cut(s) | 1341, 1387 |
| BstSLI | GKGCMC | 1 cut(s) | 1162 |
| BstV1I | GCAGC | 3 cut(s) | 355, 443, 1064 |
| BstV2I | GAAGAC | 1 cut(s) | 1017 |
| BstX2I | RGATCY | 2 cut(s) | 473, 1349 |
| BstYI | RGATCY | 2 cut(s) | 473, 1349 |
| BsuRI | GGCC | 4 cut(s) | 56, 66, 791, 1341 |
| BtgI | CCRYGG | 1 cut(s) | 61 |
| BtgZI | GCGATG | 1 cut(s) | 55 |
| BtsCI | GGATG | 5 cut(s) | 509, 571, 623, 1033, 1083 |
| BtsIMutI | CAGTG | 2 cut(s) | 834, 1425 |
| Cac8I | GCNNGC | 2 cut(s) | 348, 1158 |
| CaiI | CAGNNNCTG | 1 cut(s) | 914 |
| CfoI | GCGC | 1 cut(s) | 1194 |
| CseI | GACGC | 1 cut(s) | 79 |
| Csp6I | GTAC | 3 cut(s) | 770, 1004, 1249 |
| CviAII | CATG | 9 cut(s) | 62, 86, 470, 734, 872, 1087, 1189, 1207, 1402 |
| CviQI | GTAC | 3 cut(s) | 770, 1004, 1249 |
| DdeI | CTNAG | 7 cut(s) | 134, 692, 780, 937, 1023, 1265, 1417 |
| DpnI | GATC | 7 cut(s) | 326, 475, 708, 732, 816, 1017, 1351 |
| DpnII | GATC | 7 cut(s) | 324, 473, 706, 730, 814, 1015, 1349 |
| DriI | GACNNNNNGTC | 1 cut(s) | 504 |
| Eam1104I | CTCTTC | 5 cut(s) | 17, 23, 303, 354, 977 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 504 |
| EarI | CTCTTC | 5 cut(s) | 17, 23, 303, 354, 977 |
| EciI | GGCGGA | 1 cut(s) | 49 |
| Eco130I | CCWWGG | 2 cut(s) | 61, 481 |
| Eco32I | GATATC | 1 cut(s) | 1377 |
| Eco57I | CTGAAG | 1 cut(s) | 1164 |
| EcoRII | CCWGG | 2 cut(s) | 1341, 1387 |
| EcoRV | GATATC | 1 cut(s) | 1377 |
| EcoT14I | CCWWGG | 2 cut(s) | 61, 481 |
| ErhI | CCWWGG | 2 cut(s) | 61, 481 |
| Esp3I | CGTCTC | 1 cut(s) | 269 |
| FaeI | CATG | 9 cut(s) | 65, 89, 473, 737, 875, 1090, 1192, 1210, 1405 |
| FaqI | GGGAC | 1 cut(s) | 759 |
| FatI | CATG | 9 cut(s) | 61, 85, 469, 733, 871, 1086, 1188, 1206, 1401 |
| FbaI | TGATCA | 3 cut(s) | 706, 730, 814 |
| Fnu4HI | GCNGC | 3 cut(s) | 344, 432, 1053 |
| FokI | GGATG | 5 cut(s) | 516, 578, 630, 1040, 1090 |
| Fsp4HI | GCNGC | 3 cut(s) | 344, 432, 1053 |
| FspBI | CTAG | 6 cut(s) | 68, 123, 435, 452, 884, 1178 |
| FspI | TGCGCA | 1 cut(s) | 1193 |
| GlaI | GCGC | 1 cut(s) | 1193 |
| GluI | GCNGC | 3 cut(s) | 344, 432, 1053 |
| HaeIII | GGCC | 4 cut(s) | 56, 66, 791, 1341 |
| HgaI | GACGC | 1 cut(s) | 79 |
| HhaI | GCGC | 1 cut(s) | 1194 |
| Hin1I | GRCGYC | 1 cut(s) | 90 |
| Hin1II | CATG | 9 cut(s) | 65, 89, 473, 737, 875, 1090, 1192, 1210, 1405 |
| Hin6I | GCGC | 1 cut(s) | 1192 |
| HinP1I | GCGC | 1 cut(s) | 1192 |
| HincII | GTYRAC | 1 cut(s) | 162 |
| HindII | GTYRAC | 1 cut(s) | 162 |
| HinfI | GANTC | 3 cut(s) | 223, 556, 1104 |
| HpaI | GTTAAC | 1 cut(s) | 162 |
| HphI | GGTGA | 4 cut(s) | 85, 968, 1106, 1117 |
| Hpy166II | GTNNAC | 4 cut(s) | 162, 494, 798, 1160 |
| Hpy188I | TCNGA | 1 cut(s) | 1024 |
| Hpy188III | TCNNGA | 2 cut(s) | 182, 710 |
| Hpy8I | GTNNAC | 4 cut(s) | 162, 494, 798, 1160 |
| HpyAV | CCTTC | 3 cut(s) | 103, 253, 1111 |
| HpyCH4III | ACNGT | 4 cut(s) | 74, 97, 280, 838 |
| HpyCH4V | TGCA | 9 cut(s) | 295, 413, 920, 1086, 1160, 1202, 1230, 1322, 1382 |
| HpyF3I | CTNAG | 7 cut(s) | 134, 692, 780, 937, 1023, 1265, 1417 |
| Hsp92I | GRCGYC | 1 cut(s) | 90 |
| Hsp92II | CATG | 9 cut(s) | 65, 89, 473, 737, 875, 1090, 1192, 1210, 1405 |
| HspAI | GCGC | 1 cut(s) | 1192 |
| KpnI | GGTACC | 1 cut(s) | 1252 |
| Ksp22I | TGATCA | 3 cut(s) | 706, 730, 814 |
| KspAI | GTTAAC | 1 cut(s) | 162 |
| Kzo9I | GATC | 7 cut(s) | 324, 473, 706, 730, 814, 1015, 1349 |
| LmnI | GCTCC | 1 cut(s) | 688 |
| Lsp1109I | GCAGC | 3 cut(s) | 355, 443, 1064 |
| LweI | GCATC | 1 cut(s) | 400 |
| MaeI | CTAG | 6 cut(s) | 68, 123, 435, 452, 884, 1178 |
| MaeIII | GTNAC | 3 cut(s) | 91, 1223, 1301 |
| MalI | GATC | 7 cut(s) | 326, 475, 708, 732, 816, 1017, 1351 |
| MboI | GATC | 7 cut(s) | 324, 473, 706, 730, 814, 1015, 1349 |
| MboII | GAAGA | 6 cut(s) | 34, 40, 320, 371, 994, 1022 |
| MfeI | CAATTG | 2 cut(s) | 921, 1323 |
| MflI | RGATCY | 2 cut(s) | 473, 1349 |
| MhlI | GDGCHC | 1 cut(s) | 1162 |
| MmeI | TCCRAC | 4 cut(s) | 533, 693, 1081, 1263 |
| MseI | TTAA | 4 cut(s) | 14, 161, 287, 330 |
| MslI | CAYNNNNRTG | 1 cut(s) | 839 |
| MspR9I | CCNGG | 2 cut(s) | 1343, 1389 |
| MunI | CAATTG | 2 cut(s) | 921, 1323 |
| Mva1269I | GAATGC | 1 cut(s) | 937 |
| MvaI | CCWGG | 2 cut(s) | 1343, 1389 |
| NcoI | CCATGG | 1 cut(s) | 61 |
| NdeII | GATC | 7 cut(s) | 324, 473, 706, 730, 814, 1015, 1349 |
| NlaIII | CATG | 9 cut(s) | 65, 89, 473, 737, 875, 1090, 1192, 1210, 1405 |
| NlaIV | GGNNCC | 1 cut(s) | 1250 |
| NmuCI | GTSAC | 2 cut(s) | 91, 1301 |
| NsbI | TGCGCA | 1 cut(s) | 1193 |
| NspI | RCATGY | 2 cut(s) | 1090, 1192 |
| PctI | GAATGC | 1 cut(s) | 937 |
| PfeI | GAWTC | 3 cut(s) | 223, 556, 1104 |
| PkrI | GCNGC | 3 cut(s) | 345, 433, 1054 |
| Psp6I | CCWGG | 2 cut(s) | 1341, 1387 |
| PspGI | CCWGG | 2 cut(s) | 1341, 1387 |
| PspN4I | GGNNCC | 1 cut(s) | 1250 |
| PstNI | CAGNNNCTG | 1 cut(s) | 914 |
| PsuI | RGATCY | 2 cut(s) | 473, 1349 |
| RsaI | GTAC | 3 cut(s) | 771, 1005, 1250 |
| RsaNI | GTAC | 3 cut(s) | 770, 1004, 1249 |
| RseI | CAYNNNNRTG | 1 cut(s) | 839 |
| SaqAI | TTAA | 4 cut(s) | 14, 161, 287, 330 |
| SatI | GCNGC | 3 cut(s) | 344, 432, 1053 |
| Sau3AI | GATC | 7 cut(s) | 324, 473, 706, 730, 814, 1015, 1349 |
| ScrFI | CCNGG | 2 cut(s) | 1343, 1389 |
| SduI | GDGCHC | 1 cut(s) | 1162 |
| SfaNI | GCATC | 1 cut(s) | 400 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 839 |
| SmlI | CTYRAG | 2 cut(s) | 182, 977 |
| SmoI | CTYRAG | 2 cut(s) | 182, 977 |
| SsiI | CCGC | 2 cut(s) | 34, 881 |
| SspI | AATATT | 1 cut(s) | 303 |
| SspMI | CTAG | 6 cut(s) | 68, 123, 435, 452, 884, 1178 |
| StyD4I | CCNGG | 2 cut(s) | 1341, 1387 |
| StyI | CCWWGG | 2 cut(s) | 61, 481 |
| TaaI | ACNGT | 4 cut(s) | 74, 97, 280, 838 |
| TaqI | TCGA | 1 cut(s) | 526 |
| TfiI | GAWTC | 3 cut(s) | 223, 556, 1104 |
| Tru1I | TTAA | 4 cut(s) | 14, 161, 287, 330 |
| Tru9I | TTAA | 4 cut(s) | 14, 161, 287, 330 |
| TscAI | CASTG | 2 cut(s) | 841, 1425 |
| TseFI | GTSAC | 2 cut(s) | 91, 1301 |
| TseI | GCWGC | 3 cut(s) | 343, 431, 1052 |
| Tsp45I | GTSAC | 2 cut(s) | 91, 1301 |
| TspDTI | ATGAA | 7 cut(s) | 74, 534, 569, 975, 1047, 1059, 1390 |
| TspGWI | ACGGA | 2 cut(s) | 21, 1177 |
| TspRI | CASTG | 2 cut(s) | 841, 1425 |
| VneI | GTGCAC | 1 cut(s) | 1158 |
| XapI | RAATTY | 2 cut(s) | 368, 1066 |
| XceI | RCATGY | 2 cut(s) | 1090, 1192 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 869 |
| XspI | CTAG | 6 cut(s) | 68, 123, 435, 452, 884, 1178 |