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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 334 |
| AccII | CGCG | 2 cut(s) | 504, 579 |
| AciI | CCGC | 1 cut(s) | 266 |
| AcsI | RAATTY | 2 cut(s) | 353, 400 |
| AcuI | CTGAAG | 1 cut(s) | 835 |
| AcyI | GRCGYC | 1 cut(s) | 110 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 931 |
| AgeI | ACCGGT | 1 cut(s) | 989 |
| AgsI | TTSAA | 6 cut(s) | 118, 223, 248, 440, 716, 940 |
| AleI | CACNNNNGTG | 2 cut(s) | 990, 1000 |
| AluBI | AGCT | 7 cut(s) | 29, 391, 521, 820, 845, 900, 921 |
| AluI | AGCT | 7 cut(s) | 29, 391, 521, 820, 845, 900, 921 |
| Alw21I | GWGCWC | 1 cut(s) | 997 |
| Alw26I | GTCTC | 2 cut(s) | 248, 678 |
| Alw44I | GTGCAC | 1 cut(s) | 993 |
| AoxI | GGCC | 2 cut(s) | 605, 765 |
| ApaLI | GTGCAC | 1 cut(s) | 993 |
| ApeKI | GCWGC | 4 cut(s) | 29, 230, 288, 897 |
| ApoI | RAATTY | 2 cut(s) | 353, 400 |
| AsiGI | ACCGGT | 1 cut(s) | 989 |
| AspLEI | GCGC | 1 cut(s) | 504 |
| AspS9I | GGNCC | 1 cut(s) | 765 |
| AsuC2I | CCSGG | 1 cut(s) | 151 |
| AsuHPI | GGTGA | 5 cut(s) | 87, 191, 422, 505, 784 |
| AsuNHI | GCTAGC | 2 cut(s) | 391, 455 |
| BaeGI | GKGCMC | 1 cut(s) | 997 |
| Bbv12I | GWGCWC | 1 cut(s) | 997 |
| BbvI | GCAGC | 4 cut(s) | 16, 217, 300, 909 |
| BccI | CCATC | 4 cut(s) | 440, 779, 803, 837 |
| BceAI | ACGGC | 1 cut(s) | 97 |
| BclI | TGATCA | 1 cut(s) | 700 |
| BcnI | CCSGG | 1 cut(s) | 151 |
| BcoDI | GTCTC | 2 cut(s) | 248, 678 |
| BfaI | CTAG | 4 cut(s) | 195, 392, 456, 956 |
| BisI | GCNGC | 4 cut(s) | 30, 231, 289, 898 |
| BlsI | GCNGC | 4 cut(s) | 31, 232, 290, 899 |
| Bme1390I | CCNGG | 1 cut(s) | 151 |
| BmgT120I | GGNCC | 1 cut(s) | 765 |
| BmiI | GGNNCC | 1 cut(s) | 430 |
| BmrFI | CCNGG | 1 cut(s) | 151 |
| BmsI | GCATC | 5 cut(s) | 150, 308, 523, 571, 942 |
| BmtI | GCTAGC | 2 cut(s) | 395, 459 |
| BpuMI | CCSGG | 1 cut(s) | 151 |
| BsaBI | GATNNNNATC | 1 cut(s) | 699 |
| BsaHI | GRCGYC | 1 cut(s) | 110 |
| BsaJI | CCNNGG | 1 cut(s) | 18 |
| BsaWI | WCCGGW | 1 cut(s) | 989 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 29, 59 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 931 |
| Bse118I | RCCGGY | 1 cut(s) | 989 |
| Bse3DI | GCAATG | 1 cut(s) | 12 |
| Bse8I | GATNNNNATC | 1 cut(s) | 699 |
| BseDI | CCNNGG | 1 cut(s) | 18 |
| BseGI | GGATG | 6 cut(s) | 247, 319, 790, 795, 829, 865 |
| BseJI | GATNNNNATC | 1 cut(s) | 699 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 931 |
| BseMI | GCAATG | 1 cut(s) | 12 |
| BseRI | GAGGAG | 1 cut(s) | 266 |
| BseSI | GKGCMC | 1 cut(s) | 997 |
| BseXI | GCAGC | 4 cut(s) | 16, 217, 300, 909 |
| BsgI | GTGCAG | 1 cut(s) | 216 |
| Bsh1236I | CGCG | 2 cut(s) | 504, 579 |
| BshFI | GGCC | 2 cut(s) | 607, 767 |
| BshTI | ACCGGT | 1 cut(s) | 989 |
| BsiHKAI | GWGCWC | 1 cut(s) | 997 |
| BsiSI | CCGG | 2 cut(s) | 151, 990 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 931 |
| BsmAI | GTCTC | 2 cut(s) | 248, 678 |
| BsnI | GGCC | 2 cut(s) | 607, 767 |
| Bsp1286I | GDGCHC | 1 cut(s) | 997 |
| Bsp143I | GATC | 3 cut(s) | 187, 700, 963 |
| BspACI | CCGC | 1 cut(s) | 266 |
| BspANI | GGCC | 2 cut(s) | 607, 767 |
| BspFNI | CGCG | 2 cut(s) | 504, 579 |
| BspHI | TCATGA | 1 cut(s) | 703 |
| BspLI | GGNNCC | 1 cut(s) | 430 |
| BspOI | GCTAGC | 2 cut(s) | 395, 459 |
| BspQI | GCTCTTC | 1 cut(s) | 810 |
| BsrDI | GCAATG | 1 cut(s) | 12 |
| BsrFI | RCCGGY | 1 cut(s) | 989 |
| BssAI | RCCGGY | 1 cut(s) | 989 |
| BssECI | CCNNGG | 1 cut(s) | 18 |
| BssMI | GATC | 3 cut(s) | 187, 700, 963 |
| BssNI | GRCGYC | 1 cut(s) | 110 |
| BssT1I | CCWWGG | 1 cut(s) | 18 |
| Bst4CI | ACNGT | 4 cut(s) | 202, 259, 478, 634 |
| Bst6I | CTCTTC | 3 cut(s) | 243, 668, 810 |
| BstACI | GRCGYC | 1 cut(s) | 110 |
| BstC8I | GCNNGC | 3 cut(s) | 393, 457, 726 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 929 |
| BstF5I | GGATG | 6 cut(s) | 247, 319, 790, 795, 829, 865 |
| BstFNI | CGCG | 2 cut(s) | 504, 579 |
| BstHHI | GCGC | 1 cut(s) | 504 |
| BstKTI | GATC | 3 cut(s) | 190, 703, 966 |
| BstMAI | GTCTC | 2 cut(s) | 248, 678 |
| BstMBI | GATC | 3 cut(s) | 187, 700, 963 |
| BstSCI | CCNGG | 1 cut(s) | 149 |
| BstSLI | GKGCMC | 1 cut(s) | 997 |
| BstUI | CGCG | 2 cut(s) | 504, 579 |
| BstV1I | GCAGC | 4 cut(s) | 16, 217, 300, 909 |
| BsuRI | GGCC | 2 cut(s) | 607, 767 |
| BtgZI | GCGATG | 1 cut(s) | 594 |
| BtsCI | GGATG | 6 cut(s) | 247, 319, 790, 795, 829, 865 |
| Cac8I | GCNNGC | 3 cut(s) | 393, 457, 726 |
| CciI | TCATGA | 1 cut(s) | 703 |
| CfoI | GCGC | 1 cut(s) | 504 |
| Cfr10I | RCCGGY | 1 cut(s) | 989 |
| Cfr13I | GGNCC | 1 cut(s) | 765 |
| CseI | GACGC | 1 cut(s) | 118 |
| CspAI | ACCGGT | 1 cut(s) | 989 |
| CviAII | CATG | 4 cut(s) | 594, 704, 871, 880 |
| DpnI | GATC | 3 cut(s) | 189, 702, 965 |
| DpnII | GATC | 3 cut(s) | 187, 700, 963 |
| Eam1104I | CTCTTC | 3 cut(s) | 243, 668, 810 |
| EarI | CTCTTC | 3 cut(s) | 243, 668, 810 |
| Eco130I | CCWWGG | 1 cut(s) | 18 |
| Eco32I | GATATC | 1 cut(s) | 891 |
| Eco57I | CTGAAG | 1 cut(s) | 835 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 929 |
| EcoRV | GATATC | 1 cut(s) | 891 |
| EcoT14I | CCWWGG | 1 cut(s) | 18 |
| EcoT22I | ATGCAT | 1 cut(s) | 474 |
| ErhI | CCWWGG | 1 cut(s) | 18 |
| FaeI | CATG | 4 cut(s) | 597, 707, 874, 883 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 16, 48, 203, 235 |
| FatI | CATG | 4 cut(s) | 593, 703, 870, 879 |
| FbaI | TGATCA | 1 cut(s) | 700 |
| FblI | GTMKAC | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 4 cut(s) | 30, 231, 289, 898 |
| FokI | GGATG | 6 cut(s) | 254, 326, 782, 797, 816, 872 |
| Fsp4HI | GCNGC | 4 cut(s) | 30, 231, 289, 898 |
| FspBI | CTAG | 4 cut(s) | 195, 392, 456, 956 |
| GlaI | GCGC | 1 cut(s) | 503 |
| GluI | GCNGC | 4 cut(s) | 30, 231, 289, 898 |
| HaeIII | GGCC | 2 cut(s) | 607, 767 |
| HapII | CCGG | 2 cut(s) | 151, 990 |
| HgaI | GACGC | 1 cut(s) | 118 |
| HhaI | GCGC | 1 cut(s) | 504 |
| Hin1I | GRCGYC | 1 cut(s) | 110 |
| Hin1II | CATG | 4 cut(s) | 597, 707, 874, 883 |
| Hin6I | GCGC | 1 cut(s) | 502 |
| HinP1I | GCGC | 1 cut(s) | 502 |
| HincII | GTYRAC | 1 cut(s) | 85 |
| HindII | GTYRAC | 1 cut(s) | 85 |
| HinfI | GANTC | 1 cut(s) | 92 |
| HpaII | CCGG | 2 cut(s) | 151, 990 |
| HphI | GGTGA | 5 cut(s) | 87, 191, 422, 505, 784 |
| Hpy166II | GTNNAC | 4 cut(s) | 85, 335, 792, 995 |
| Hpy188III | TCNNGA | 5 cut(s) | 205, 220, 346, 704, 853 |
| Hpy8I | GTNNAC | 4 cut(s) | 85, 335, 792, 995 |
| HpyAV | CCTTC | 5 cut(s) | 166, 722, 832, 877, 979 |
| HpyCH4III | ACNGT | 4 cut(s) | 202, 259, 478, 634 |
| HpyCH4V | TGCA | 4 cut(s) | 233, 299, 472, 995 |
| Hsp92I | GRCGYC | 1 cut(s) | 110 |
| Hsp92II | CATG | 4 cut(s) | 597, 707, 874, 883 |
| HspAI | GCGC | 1 cut(s) | 502 |
| Ksp22I | TGATCA | 1 cut(s) | 700 |
| Kzo9I | GATC | 3 cut(s) | 187, 700, 963 |
| LguI | GCTCTTC | 1 cut(s) | 810 |
| LpnPI | CCDG | 7 cut(s) | 164, 343, 738, 838, 917, 993, 1003 |
| Lsp1109I | GCAGC | 4 cut(s) | 16, 217, 300, 909 |
| LweI | GCATC | 5 cut(s) | 150, 308, 523, 571, 942 |
| MaeI | CTAG | 4 cut(s) | 195, 392, 456, 956 |
| MalI | GATC | 3 cut(s) | 189, 702, 965 |
| MboI | GATC | 3 cut(s) | 187, 700, 963 |
| MboII | GAAGA | 9 cut(s) | 71, 220, 260, 374, 682, 685, 827, 841, 952 |
| MhlI | GDGCHC | 1 cut(s) | 997 |
| MluCI | AATT | 4 cut(s) | 281, 353, 400, 663 |
| MmeI | TCCRAC | 2 cut(s) | 36, 360 |
| Mph1103I | ATGCAT | 1 cut(s) | 474 |
| MseI | TTAA | 5 cut(s) | 48, 215, 387, 528, 779 |
| MslI | CAYNNNNRTG | 2 cut(s) | 990, 1000 |
| MspI | CCGG | 2 cut(s) | 151, 990 |
| MspR9I | CCNGG | 1 cut(s) | 151 |
| MvnI | CGCG | 2 cut(s) | 504, 579 |
| NciI | CCSGG | 1 cut(s) | 151 |
| NdeII | GATC | 3 cut(s) | 187, 700, 963 |
| NheI | GCTAGC | 2 cut(s) | 391, 455 |
| NlaIII | CATG | 4 cut(s) | 597, 707, 874, 883 |
| NlaIV | GGNNCC | 1 cut(s) | 430 |
| NsiI | ATGCAT | 1 cut(s) | 474 |
| OliI | CACNNNNGTG | 2 cut(s) | 990, 1000 |
| PagI | TCATGA | 1 cut(s) | 703 |
| PciSI | GCTCTTC | 1 cut(s) | 810 |
| PfeI | GAWTC | 1 cut(s) | 92 |
| PinAI | ACCGGT | 1 cut(s) | 989 |
| PkrI | GCNGC | 4 cut(s) | 31, 232, 290, 899 |
| PspN4I | GGNNCC | 1 cut(s) | 430 |
| PspPI | GGNCC | 1 cut(s) | 765 |
| RseI | CAYNNNNRTG | 2 cut(s) | 990, 1000 |
| SapI | GCTCTTC | 1 cut(s) | 810 |
| SaqAI | TTAA | 5 cut(s) | 48, 215, 387, 528, 779 |
| SatI | GCNGC | 4 cut(s) | 30, 231, 289, 898 |
| Sau3AI | GATC | 3 cut(s) | 187, 700, 963 |
| Sau96I | GGNCC | 1 cut(s) | 765 |
| ScrFI | CCNGG | 1 cut(s) | 151 |
| SduI | GDGCHC | 1 cut(s) | 997 |
| SfaNI | GCATC | 5 cut(s) | 150, 308, 523, 571, 942 |
| SgrAI | CRCCGGYG | 1 cut(s) | 989 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 990, 1000 |
| Sse9I | AATT | 4 cut(s) | 281, 353, 400, 663 |
| SsiI | CCGC | 1 cut(s) | 266 |
| SspMI | CTAG | 4 cut(s) | 195, 392, 456, 956 |
| StyD4I | CCNGG | 1 cut(s) | 149 |
| StyI | CCWWGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 4 cut(s) | 202, 259, 478, 634 |
| TaqI | TCGA | 1 cut(s) | 893 |
| TasI | AATT | 4 cut(s) | 281, 353, 400, 663 |
| TfiI | GAWTC | 1 cut(s) | 92 |
| Tru1I | TTAA | 5 cut(s) | 48, 215, 387, 528, 779 |
| Tru9I | TTAA | 5 cut(s) | 48, 215, 387, 528, 779 |
| TseI | GCWGC | 4 cut(s) | 29, 230, 288, 897 |
| TspDTI | ATGAA | 4 cut(s) | 185, 393, 896, 961 |
| VneI | GTGCAC | 1 cut(s) | 993 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 929 |
| XapI | RAATTY | 2 cut(s) | 353, 400 |
| XmiI | GTMKAC | 1 cut(s) | 334 |
| XspI | CTAG | 4 cut(s) | 195, 392, 456, 956 |
| Zsp2I | ATGCAT | 1 cut(s) | 474 |