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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 405, 418 |
| AcoI | YGGCCR | 1 cut(s) | 145 |
| AcsI | RAATTY | 2 cut(s) | 138, 556 |
| AcvI | CACGTG | 1 cut(s) | 398 |
| AfaI | GTAC | 2 cut(s) | 5, 305 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 157, 175 |
| AgsI | TTSAA | 4 cut(s) | 100, 301, 348, 358 |
| AleI | CACNNNNGTG | 1 cut(s) | 224 |
| AluBI | AGCT | 4 cut(s) | 73, 164, 539, 635 |
| AluI | AGCT | 4 cut(s) | 73, 164, 539, 635 |
| Alw21I | GWGCWC | 1 cut(s) | 637 |
| AlwI | GGATC | 2 cut(s) | 405, 418 |
| AoxI | GGCC | 1 cut(s) | 145 |
| ApeKI | GCWGC | 2 cut(s) | 256, 539 |
| ApoI | RAATTY | 2 cut(s) | 138, 556 |
| AsuHPI | GGTGA | 3 cut(s) | 103, 275, 380 |
| BamHI | GGATCC | 1 cut(s) | 410 |
| BanII | GRGCYC | 1 cut(s) | 637 |
| BbrPI | CACGTG | 1 cut(s) | 398 |
| BbsI | GAAGAC | 1 cut(s) | 659 |
| Bbv12I | GWGCWC | 1 cut(s) | 637 |
| BbvI | GCAGC | 2 cut(s) | 268, 526 |
| BccI | CCATC | 1 cut(s) | 122 |
| BclI | TGATCA | 1 cut(s) | 19 |
| BfaI | CTAG | 1 cut(s) | 432 |
| BisI | GCNGC | 2 cut(s) | 257, 540 |
| BlsI | GCNGC | 2 cut(s) | 258, 541 |
| BmiI | GGNNCC | 1 cut(s) | 412 |
| BmsI | GCATC | 1 cut(s) | 490 |
| BpiI | GAAGAC | 1 cut(s) | 659 |
| BsaAI | YACGTR | 1 cut(s) | 398 |
| BsaBI | GATNNNNATC | 1 cut(s) | 18 |
| BsaJI | CCNNGG | 1 cut(s) | 189 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 157, 175 |
| Bse8I | GATNNNNATC | 1 cut(s) | 18 |
| BseDI | CCNNGG | 1 cut(s) | 189 |
| BseGI | GGATG | 3 cut(s) | 36, 114, 184 |
| BseJI | GATNNNNATC | 1 cut(s) | 18 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 157, 175 |
| BseMII | CTCAG | 1 cut(s) | 480 |
| BseXI | GCAGC | 2 cut(s) | 268, 526 |
| BshFI | GGCC | 1 cut(s) | 147 |
| BsiHKAI | GWGCWC | 1 cut(s) | 637 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 157, 175 |
| BsmI | GAATGC | 1 cut(s) | 246 |
| BsnI | GGCC | 1 cut(s) | 147 |
| Bsp1286I | GDGCHC | 1 cut(s) | 637 |
| Bsp143I | GATC | 2 cut(s) | 19, 410 |
| Bsp19I | CCATGG | 1 cut(s) | 189 |
| BspANI | GGCC | 1 cut(s) | 147 |
| BspCNI | CTCAG | 1 cut(s) | 481 |
| BspHI | TCATGA | 1 cut(s) | 22 |
| BspLI | GGNNCC | 1 cut(s) | 412 |
| BspPI | GGATC | 2 cut(s) | 405, 418 |
| BssECI | CCNNGG | 1 cut(s) | 189 |
| BssMI | GATC | 2 cut(s) | 19, 410 |
| BssT1I | CCWWGG | 1 cut(s) | 189 |
| Bst4CI | ACNGT | 1 cut(s) | 443 |
| Bst6I | CTCTTC | 2 cut(s) | 573, 603 |
| BstBAI | YACGTR | 1 cut(s) | 398 |
| BstDEI | CTNAG | 3 cut(s) | 170, 339, 489 |
| BstDSI | CCRYGG | 1 cut(s) | 189 |
| BstEII | GGTNACC | 1 cut(s) | 109 |
| BstF5I | GGATG | 3 cut(s) | 36, 114, 184 |
| BstKTI | GATC | 2 cut(s) | 22, 413 |
| BstMBI | GATC | 2 cut(s) | 19, 410 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 466, 632 |
| BstPI | GGTNACC | 1 cut(s) | 109 |
| BstV1I | GCAGC | 2 cut(s) | 268, 526 |
| BstV2I | GAAGAC | 1 cut(s) | 659 |
| BstX2I | RGATCY | 1 cut(s) | 410 |
| BstYI | RGATCY | 1 cut(s) | 410 |
| BsuRI | GGCC | 1 cut(s) | 147 |
| BtgI | CCRYGG | 1 cut(s) | 189 |
| BtsCI | GGATG | 3 cut(s) | 36, 114, 184 |
| BtsIMutI | CAGTG | 1 cut(s) | 448 |
| CciI | TCATGA | 1 cut(s) | 22 |
| Csp6I | GTAC | 2 cut(s) | 4, 304 |
| CviAII | CATG | 4 cut(s) | 23, 190, 199, 364 |
| CviJI | RGCY | 6 cut(s) | 73, 86, 147, 164, 539, 635 |
| CviKI_1 | RGCY | 6 cut(s) | 73, 86, 147, 164, 539, 635 |
| CviQI | GTAC | 2 cut(s) | 4, 304 |
| DdeI | CTNAG | 3 cut(s) | 170, 339, 489 |
| DpnI | GATC | 2 cut(s) | 21, 412 |
| DpnII | GATC | 2 cut(s) | 19, 410 |
| EaeI | YGGCCR | 1 cut(s) | 145 |
| Eam1104I | CTCTTC | 2 cut(s) | 573, 603 |
| EarI | CTCTTC | 2 cut(s) | 573, 603 |
| Ecl136II | GAGCTC | 1 cut(s) | 635 |
| Eco130I | CCWWGG | 1 cut(s) | 189 |
| Eco24I | GRGCYC | 1 cut(s) | 637 |
| Eco32I | GATATC | 1 cut(s) | 210 |
| Eco53kI | GAGCTC | 1 cut(s) | 635 |
| Eco72I | CACGTG | 1 cut(s) | 398 |
| Eco91I | GGTNACC | 1 cut(s) | 109 |
| EcoICRI | GAGCTC | 1 cut(s) | 635 |
| EcoO65I | GGTNACC | 1 cut(s) | 109 |
| EcoRV | GATATC | 1 cut(s) | 210 |
| EcoT14I | CCWWGG | 1 cut(s) | 189 |
| EcoT22I | ATGCAT | 1 cut(s) | 294 |
| EcoT38I | GRGCYC | 1 cut(s) | 637 |
| ErhI | CCWWGG | 1 cut(s) | 189 |
| FaeI | CATG | 4 cut(s) | 26, 193, 202, 367 |
| FatI | CATG | 4 cut(s) | 22, 189, 198, 363 |
| FbaI | TGATCA | 1 cut(s) | 19 |
| Fnu4HI | GCNGC | 2 cut(s) | 257, 540 |
| FokI | GGATG | 3 cut(s) | 23, 101, 191 |
| FriOI | GRGCYC | 1 cut(s) | 637 |
| Fsp4HI | GCNGC | 2 cut(s) | 257, 540 |
| FspBI | CTAG | 1 cut(s) | 432 |
| GluI | GCNGC | 2 cut(s) | 257, 540 |
| HaeIII | GGCC | 1 cut(s) | 147 |
| Hin1II | CATG | 4 cut(s) | 26, 193, 202, 367 |
| HinfI | GANTC | 1 cut(s) | 494 |
| HphI | GGTGA | 3 cut(s) | 103, 275, 380 |
| Hpy188I | TCNGA | 3 cut(s) | 252, 490, 651 |
| Hpy188III | TCNNGA | 2 cut(s) | 23, 97 |
| HpyAV | CCTTC | 4 cut(s) | 168, 196, 401, 608 |
| HpyCH4III | ACNGT | 1 cut(s) | 443 |
| HpyCH4IV | ACGT | 1 cut(s) | 397 |
| HpyCH4V | TGCA | 2 cut(s) | 292, 481 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 466, 632 |
| HpyF3I | CTNAG | 3 cut(s) | 170, 339, 489 |
| HpySE526I | ACGT | 1 cut(s) | 397 |
| Hsp92II | CATG | 4 cut(s) | 26, 193, 202, 367 |
| Ksp22I | TGATCA | 1 cut(s) | 19 |
| Kzo9I | GATC | 2 cut(s) | 19, 410 |
| LmnI | GCTCC | 2 cut(s) | 70, 632 |
| LpnPI | CCDG | 6 cut(s) | 53, 286, 483, 606, 612, 650 |
| Lsp1109I | GCAGC | 2 cut(s) | 268, 526 |
| LweI | GCATC | 1 cut(s) | 490 |
| MaeI | CTAG | 1 cut(s) | 432 |
| MaeII | ACGT | 1 cut(s) | 397 |
| MaeIII | GTNAC | 5 cut(s) | 109, 368, 382, 443, 638 |
| MalI | GATC | 2 cut(s) | 21, 412 |
| MboI | GATC | 2 cut(s) | 19, 410 |
| MboII | GAAGA | 5 cut(s) | 112, 587, 590, 620, 664 |
| MfeI | CAATTG | 1 cut(s) | 464 |
| MflI | RGATCY | 1 cut(s) | 410 |
| MhlI | GDGCHC | 1 cut(s) | 637 |
| MluCI | AATT | 4 cut(s) | 124, 138, 464, 556 |
| MnlI | CCTC | 9 cut(s) | 231, 307, 394, 463, 484, 574, 586, 592, 604 |
| Mph1103I | ATGCAT | 1 cut(s) | 294 |
| MseI | TTAA | 2 cut(s) | 551, 670 |
| MslI | CAYNNNNRTG | 2 cut(s) | 224, 227 |
| MunI | CAATTG | 1 cut(s) | 464 |
| Mva1269I | GAATGC | 1 cut(s) | 246 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 466, 632 |
| NcoI | CCATGG | 1 cut(s) | 189 |
| NdeII | GATC | 2 cut(s) | 19, 410 |
| NlaIII | CATG | 4 cut(s) | 26, 193, 202, 367 |
| NlaIV | GGNNCC | 1 cut(s) | 412 |
| NmuCI | GTSAC | 4 cut(s) | 109, 368, 382, 443 |
| NsiI | ATGCAT | 1 cut(s) | 294 |
| OliI | CACNNNNGTG | 1 cut(s) | 224 |
| PagI | TCATGA | 1 cut(s) | 22 |
| PctI | GAATGC | 1 cut(s) | 246 |
| PfeI | GAWTC | 1 cut(s) | 494 |
| PkrI | GCNGC | 2 cut(s) | 258, 541 |
| PmaCI | CACGTG | 1 cut(s) | 398 |
| PmlI | CACGTG | 1 cut(s) | 398 |
| Ppu21I | YACGTR | 1 cut(s) | 398 |
| Psp124BI | GAGCTC | 1 cut(s) | 637 |
| PspCI | CACGTG | 1 cut(s) | 398 |
| PspEI | GGTNACC | 1 cut(s) | 109 |
| PspN4I | GGNNCC | 1 cut(s) | 412 |
| PsuI | RGATCY | 1 cut(s) | 410 |
| RsaI | GTAC | 2 cut(s) | 5, 305 |
| RsaNI | GTAC | 2 cut(s) | 4, 304 |
| RseI | CAYNNNNRTG | 2 cut(s) | 224, 227 |
| SacI | GAGCTC | 1 cut(s) | 637 |
| SaqAI | TTAA | 2 cut(s) | 551, 670 |
| SatI | GCNGC | 2 cut(s) | 257, 540 |
| Sau3AI | GATC | 2 cut(s) | 19, 410 |
| SduI | GDGCHC | 1 cut(s) | 637 |
| SfaNI | GCATC | 1 cut(s) | 490 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 224, 227 |
| Sse9I | AATT | 4 cut(s) | 124, 138, 464, 556 |
| SspMI | CTAG | 1 cut(s) | 432 |
| SstI | GAGCTC | 1 cut(s) | 637 |
| StyI | CCWWGG | 1 cut(s) | 189 |
| TaaI | ACNGT | 1 cut(s) | 443 |
| TaiI | ACGT | 1 cut(s) | 400 |
| TasI | AATT | 4 cut(s) | 124, 138, 464, 556 |
| TatI | WGTACW | 1 cut(s) | 303 |
| TfiI | GAWTC | 1 cut(s) | 494 |
| Tru1I | TTAA | 2 cut(s) | 551, 670 |
| Tru9I | TTAA | 2 cut(s) | 551, 670 |
| TscAI | CASTG | 1 cut(s) | 448 |
| TseFI | GTSAC | 4 cut(s) | 109, 368, 382, 443 |
| TseI | GCWGC | 2 cut(s) | 256, 539 |
| Tsp45I | GTSAC | 4 cut(s) | 109, 368, 382, 443 |
| TspDTI | ATGAA | 2 cut(s) | 215, 489 |
| TspRI | CASTG | 1 cut(s) | 448 |
| XapI | RAATTY | 2 cut(s) | 138, 556 |
| XspI | CTAG | 1 cut(s) | 432 |
| Zsp2I | ATGCAT | 1 cut(s) | 294 |