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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 445 |
| AciI | CCGC | 7 cut(s) | 87, 141, 153, 459, 462, 465, 468 |
| AcsI | RAATTY | 1 cut(s) | 517 |
| AcyI | GRCGYC | 1 cut(s) | 138 |
| AfaI | GTAC | 1 cut(s) | 392 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 269 |
| AluBI | AGCT | 3 cut(s) | 6, 187, 208 |
| AluI | AGCT | 3 cut(s) | 6, 187, 208 |
| Alw21I | GWGCWC | 2 cut(s) | 8, 297 |
| Ama87I | CYCGRG | 1 cut(s) | 209 |
| AoxI | GGCC | 1 cut(s) | 276 |
| ApeKI | GCWGC | 1 cut(s) | 15 |
| ApoI | RAATTY | 1 cut(s) | 517 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 116, 148 |
| AspLEI | GCGC | 1 cut(s) | 445 |
| AspS9I | GGNCC | 1 cut(s) | 560 |
| AsuC2I | CCSGG | 1 cut(s) | 227 |
| AsuHPI | GGTGA | 3 cut(s) | 229, 488, 496 |
| AvaI | CYCGRG | 1 cut(s) | 209 |
| AvaII | GGWCC | 1 cut(s) | 560 |
| BanII | GRGCYC | 2 cut(s) | 8, 528 |
| BauI | CACGAG | 1 cut(s) | 317 |
| BbsI | GAAGAC | 1 cut(s) | 129 |
| Bbv12I | GWGCWC | 2 cut(s) | 8, 297 |
| BbvI | GCAGC | 1 cut(s) | 27 |
| BccI | CCATC | 1 cut(s) | 536 |
| BceAI | ACGGC | 1 cut(s) | 263 |
| BcnI | CCSGG | 1 cut(s) | 227 |
| BisI | GCNGC | 5 cut(s) | 16, 141, 460, 463, 466 |
| BlsI | GCNGC | 5 cut(s) | 17, 142, 461, 464, 467 |
| Bme1390I | CCNGG | 1 cut(s) | 227 |
| Bme18I | GGWCC | 1 cut(s) | 560 |
| BmeT110I | CYCGRG | 1 cut(s) | 209 |
| BmgT120I | GGNCC | 1 cut(s) | 560 |
| BmiI | GGNNCC | 1 cut(s) | 561 |
| BmrFI | CCNGG | 1 cut(s) | 227 |
| BmsI | GCATC | 1 cut(s) | 30 |
| BpiI | GAAGAC | 1 cut(s) | 129 |
| Bpu10I | CCTNAGC | 1 cut(s) | 527 |
| BpuEI | CTTGAG | 1 cut(s) | 242 |
| BpuMI | CCSGG | 1 cut(s) | 227 |
| BsaHI | GRCGYC | 1 cut(s) | 138 |
| BsaJI | CCNNGG | 1 cut(s) | 192 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 83, 113, 430, 460 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 269 |
| Bse118I | RCCGGY | 2 cut(s) | 239, 599 |
| BseDI | CCNNGG | 1 cut(s) | 192 |
| BseGI | GGATG | 2 cut(s) | 222, 231 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 269 |
| BseMII | CTCAG | 1 cut(s) | 541 |
| BseRI | GAGGAG | 5 cut(s) | 119, 212, 506, 509, 512 |
| BseXI | GCAGC | 1 cut(s) | 27 |
| BseYI | CCCAGC | 1 cut(s) | 183 |
| Bsh1236I | CGCG | 1 cut(s) | 445 |
| Bsh1285I | CGRYCG | 2 cut(s) | 288, 472 |
| BshFI | GGCC | 1 cut(s) | 278 |
| BsiEI | CGRYCG | 2 cut(s) | 288, 472 |
| BsiHKAI | GWGCWC | 2 cut(s) | 8, 297 |
| BsiHKCI | CYCGRG | 1 cut(s) | 209 |
| BsiSI | CCGG | 5 cut(s) | 226, 240, 398, 563, 600 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 269 |
| BsnI | GGCC | 1 cut(s) | 278 |
| BsoBI | CYCGRG | 1 cut(s) | 209 |
| Bsp1286I | GDGCHC | 3 cut(s) | 8, 297, 528 |
| Bsp143I | GATC | 2 cut(s) | 219, 285 |
| BspACI | CCGC | 7 cut(s) | 87, 141, 153, 459, 462, 465, 468 |
| BspANI | GGCC | 1 cut(s) | 278 |
| BspCNI | CTCAG | 1 cut(s) | 540 |
| BspFNI | CGCG | 1 cut(s) | 445 |
| BspLI | GGNNCC | 1 cut(s) | 561 |
| BsrFI | RCCGGY | 2 cut(s) | 239, 599 |
| BssAI | RCCGGY | 2 cut(s) | 239, 599 |
| BssECI | CCNNGG | 1 cut(s) | 192 |
| BssMI | GATC | 2 cut(s) | 219, 285 |
| BssNI | GRCGYC | 1 cut(s) | 138 |
| BssSI | CACGAG | 1 cut(s) | 317 |
| BssT1I | CCWWGG | 1 cut(s) | 192 |
| Bst2BI | CACGAG | 1 cut(s) | 317 |
| Bst4CI | ACNGT | 1 cut(s) | 359 |
| Bst6I | CTCTTC | 3 cut(s) | 137, 474, 498 |
| BstACI | GRCGYC | 1 cut(s) | 138 |
| BstC8I | GCNNGC | 1 cut(s) | 189 |
| BstDEI | CTNAG | 1 cut(s) | 527 |
| BstF5I | GGATG | 2 cut(s) | 222, 231 |
| BstFNI | CGCG | 1 cut(s) | 445 |
| BstHHI | GCGC | 1 cut(s) | 445 |
| BstKTI | GATC | 2 cut(s) | 222, 288 |
| BstMBI | GATC | 2 cut(s) | 219, 285 |
| BstMCI | CGRYCG | 2 cut(s) | 288, 472 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 12, 465 |
| BstSCI | CCNGG | 1 cut(s) | 225 |
| BstUI | CGCG | 1 cut(s) | 445 |
| BstV1I | GCAGC | 1 cut(s) | 27 |
| BstV2I | GAAGAC | 1 cut(s) | 129 |
| BsuRI | GGCC | 1 cut(s) | 278 |
| BtsCI | GGATG | 2 cut(s) | 222, 231 |
| Cac8I | GCNNGC | 1 cut(s) | 189 |
| CfoI | GCGC | 1 cut(s) | 445 |
| Cfr10I | RCCGGY | 2 cut(s) | 239, 599 |
| Cfr13I | GGNCC | 1 cut(s) | 560 |
| CseI | GACGC | 2 cut(s) | 146, 295 |
| Csp6I | GTAC | 1 cut(s) | 391 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 604 |
| CviAII | CATG | 1 cut(s) | 55 |
| CviJI | RGCY | 7 cut(s) | 6, 187, 208, 262, 278, 526, 566 |
| CviKI_1 | RGCY | 7 cut(s) | 6, 187, 208, 262, 278, 526, 566 |
| CviQI | GTAC | 1 cut(s) | 391 |
| DdeI | CTNAG | 1 cut(s) | 527 |
| DpnI | GATC | 2 cut(s) | 221, 287 |
| DpnII | GATC | 2 cut(s) | 219, 285 |
| Eam1104I | CTCTTC | 3 cut(s) | 137, 474, 498 |
| EarI | CTCTTC | 3 cut(s) | 137, 474, 498 |
| EciI | GGCGGA | 1 cut(s) | 142 |
| Ecl136II | GAGCTC | 1 cut(s) | 6 |
| Eco130I | CCWWGG | 1 cut(s) | 192 |
| Eco24I | GRGCYC | 2 cut(s) | 8, 528 |
| Eco47I | GGWCC | 1 cut(s) | 560 |
| Eco53kI | GAGCTC | 1 cut(s) | 6 |
| Eco88I | CYCGRG | 1 cut(s) | 209 |
| EcoICRI | GAGCTC | 1 cut(s) | 6 |
| EcoT14I | CCWWGG | 1 cut(s) | 192 |
| EcoT38I | GRGCYC | 2 cut(s) | 8, 528 |
| ErhI | CCWWGG | 1 cut(s) | 192 |
| FaeI | CATG | 1 cut(s) | 58 |
| FaiI | YATR | 6 cut(s) | 56, 363, 368, 405, 407, 409 |
| FatI | CATG | 1 cut(s) | 54 |
| Fnu4HI | GCNGC | 5 cut(s) | 16, 141, 460, 463, 466 |
| FokI | GGATG | 2 cut(s) | 209, 218 |
| FriOI | GRGCYC | 2 cut(s) | 8, 528 |
| Fsp4HI | GCNGC | 5 cut(s) | 16, 141, 460, 463, 466 |
| GlaI | GCGC | 1 cut(s) | 444 |
| GluI | GCNGC | 5 cut(s) | 16, 141, 460, 463, 466 |
| GsaI | CCCAGC | 1 cut(s) | 187 |
| HaeIII | GGCC | 1 cut(s) | 278 |
| HapII | CCGG | 5 cut(s) | 226, 240, 398, 563, 600 |
| HgaI | GACGC | 2 cut(s) | 146, 295 |
| HhaI | GCGC | 1 cut(s) | 445 |
| Hin1I | GRCGYC | 1 cut(s) | 138 |
| Hin1II | CATG | 1 cut(s) | 58 |
| Hin6I | GCGC | 1 cut(s) | 443 |
| HinP1I | GCGC | 1 cut(s) | 443 |
| HinfI | GANTC | 3 cut(s) | 200, 251, 554 |
| HpaII | CCGG | 5 cut(s) | 226, 240, 398, 563, 600 |
| HphI | GGTGA | 3 cut(s) | 229, 488, 496 |
| Hpy166II | GTNNAC | 1 cut(s) | 393 |
| Hpy188I | TCNGA | 4 cut(s) | 74, 334, 570, 582 |
| Hpy188III | TCNNGA | 3 cut(s) | 211, 283, 317 |
| Hpy8I | GTNNAC | 1 cut(s) | 393 |
| Hpy99I | CGWCG | 7 cut(s) | 140, 161, 164, 167, 170, 173, 311 |
| HpyAV | CCTTC | 2 cut(s) | 19, 112 |
| HpyCH4III | ACNGT | 1 cut(s) | 359 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 12, 465 |
| HpyF3I | CTNAG | 1 cut(s) | 527 |
| Hsp92I | GRCGYC | 1 cut(s) | 138 |
| Hsp92II | CATG | 1 cut(s) | 58 |
| HspAI | GCGC | 1 cut(s) | 443 |
| Kzo9I | GATC | 2 cut(s) | 219, 285 |
| LmnI | GCTCC | 3 cut(s) | 11, 48, 292 |
| Lsp1109I | GCAGC | 1 cut(s) | 27 |
| LweI | GCATC | 1 cut(s) | 30 |
| MaeIII | GTNAC | 1 cut(s) | 280 |
| MalI | GATC | 2 cut(s) | 221, 287 |
| MboI | GATC | 2 cut(s) | 219, 285 |
| MboII | GAAGA | 5 cut(s) | 124, 134, 392, 491, 515 |
| MhlI | GDGCHC | 3 cut(s) | 8, 297, 528 |
| MluCI | AATT | 3 cut(s) | 265, 517, 533 |
| MlyI | GAGTC | 1 cut(s) | 209 |
| MmeI | TCCRAC | 1 cut(s) | 97 |
| MspI | CCGG | 5 cut(s) | 226, 240, 398, 563, 600 |
| MspR9I | CCNGG | 1 cut(s) | 227 |
| MvnI | CGCG | 1 cut(s) | 445 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 12, 465 |
| NciI | CCSGG | 1 cut(s) | 227 |
| NdeII | GATC | 2 cut(s) | 219, 285 |
| NlaIII | CATG | 1 cut(s) | 58 |
| NlaIV | GGNNCC | 1 cut(s) | 561 |
| NmuCI | GTSAC | 1 cut(s) | 280 |
| PaeR7I | CTCGAG | 1 cut(s) | 209 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 165, 168, 315 |
| PfeI | GAWTC | 2 cut(s) | 251, 554 |
| PkrI | GCNGC | 5 cut(s) | 17, 142, 461, 464, 467 |
| Ple19I | CGATCG | 1 cut(s) | 288 |
| PleI | GAGTC | 1 cut(s) | 208 |
| PpsI | GAGTC | 1 cut(s) | 208 |
| Psp124BI | GAGCTC | 1 cut(s) | 8 |
| PspFI | CCCAGC | 1 cut(s) | 183 |
| PspN4I | GGNNCC | 1 cut(s) | 561 |
| PspPI | GGNCC | 1 cut(s) | 560 |
| PvuI | CGATCG | 1 cut(s) | 288 |
| RsaI | GTAC | 1 cut(s) | 392 |
| RsaNI | GTAC | 1 cut(s) | 391 |
| SacI | GAGCTC | 1 cut(s) | 8 |
| SatI | GCNGC | 5 cut(s) | 16, 141, 460, 463, 466 |
| Sau3AI | GATC | 2 cut(s) | 219, 285 |
| Sau96I | GGNCC | 1 cut(s) | 560 |
| SchI | GAGTC | 1 cut(s) | 209 |
| ScrFI | CCNGG | 1 cut(s) | 227 |
| SduI | GDGCHC | 3 cut(s) | 8, 297, 528 |
| SetI | ASST | 8 cut(s) | 8, 39, 129, 150, 189, 210, 486, 623 |
| SfaNI | GCATC | 1 cut(s) | 30 |
| Sfr274I | CTCGAG | 1 cut(s) | 209 |
| SinI | GGWCC | 1 cut(s) | 560 |
| SlaI | CTCGAG | 1 cut(s) | 209 |
| SmlI | CTYRAG | 2 cut(s) | 209, 257 |
| SmoI | CTYRAG | 2 cut(s) | 209, 257 |
| Sse9I | AATT | 3 cut(s) | 265, 517, 533 |
| SsiI | CCGC | 7 cut(s) | 87, 141, 153, 459, 462, 465, 468 |
| SstI | GAGCTC | 1 cut(s) | 8 |
| StyD4I | CCNGG | 1 cut(s) | 225 |
| StyI | CCWWGG | 1 cut(s) | 192 |
| TaaI | ACNGT | 1 cut(s) | 359 |
| TaqI | TCGA | 4 cut(s) | 30, 120, 135, 210 |
| TasI | AATT | 3 cut(s) | 265, 517, 533 |
| TauI | GCSGC | 4 cut(s) | 143, 462, 465, 468 |
| TfiI | GAWTC | 2 cut(s) | 251, 554 |
| TseFI | GTSAC | 1 cut(s) | 280 |
| TseI | GCWGC | 1 cut(s) | 15 |
| Tsp45I | GTSAC | 1 cut(s) | 280 |
| TspDTI | ATGAA | 2 cut(s) | 393, 566 |
| VpaK11BI | GGWCC | 1 cut(s) | 560 |
| XapI | RAATTY | 1 cut(s) | 517 |
| XhoI | CTCGAG | 1 cut(s) | 209 |