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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 489 |
| AccII | CGCG | 1 cut(s) | 936 |
| AciI | CCGC | 4 cut(s) | 366, 449, 934, 1003 |
| AclWI | GGATC | 2 cut(s) | 1157, 1331 |
| AcoI | YGGCCR | 2 cut(s) | 469, 1116 |
| AcuI | CTGAAG | 3 cut(s) | 138, 801, 1195 |
| AfaI | GTAC | 2 cut(s) | 177, 949 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 499 |
| AflII | CTTAAG | 1 cut(s) | 1106 |
| AjnI | CCWGG | 1 cut(s) | 166 |
| AluBI | AGCT | 7 cut(s) | 425, 480, 530, 616, 992, 1081, 1281 |
| AluI | AGCT | 7 cut(s) | 425, 480, 530, 616, 992, 1081, 1281 |
| Alw26I | GTCTC | 1 cut(s) | 963 |
| AlwI | GGATC | 2 cut(s) | 1157, 1331 |
| AoxI | GGCC | 5 cut(s) | 12, 44, 469, 962, 1116 |
| ApeKI | GCWGC | 5 cut(s) | 477, 530, 989, 1081, 1260 |
| AseI | ATTAAT | 1 cut(s) | 912 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 381 |
| AspS9I | GGNCC | 3 cut(s) | 13, 44, 568 |
| AsuC2I | CCSGG | 1 cut(s) | 16 |
| AsuHPI | GGTGA | 3 cut(s) | 423, 862, 1144 |
| AvaII | GGWCC | 1 cut(s) | 568 |
| AxyI | CCTNAGG | 2 cut(s) | 708, 1168 |
| BalI | TGGCCA | 2 cut(s) | 471, 1118 |
| BanI | GGYRCC | 1 cut(s) | 489 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1265, 1297 |
| BbvCI | CCTCAGC | 1 cut(s) | 846 |
| BbvI | GCAGC | 5 cut(s) | 489, 517, 1001, 1068, 1247 |
| BccI | CCATC | 6 cut(s) | 331, 394, 602, 1139, 1163, 1214 |
| BciT130I | CCWGG | 1 cut(s) | 168 |
| BciVI | GTATCC | 1 cut(s) | 174 |
| BclI | TGATCA | 1 cut(s) | 1060 |
| BcnI | CCSGG | 1 cut(s) | 16 |
| BcoDI | GTCTC | 1 cut(s) | 963 |
| BfaI | CTAG | 3 cut(s) | 281, 354, 966 |
| BfmI | CTRYAG | 1 cut(s) | 987 |
| BfrI | CTTAAG | 1 cut(s) | 1106 |
| BfuI | GTATCC | 1 cut(s) | 174 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1124 |
| BisI | GCNGC | 6 cut(s) | 366, 478, 531, 990, 1082, 1261 |
| BlsI | GCNGC | 6 cut(s) | 367, 479, 532, 991, 1083, 1262 |
| Bme1390I | CCNGG | 2 cut(s) | 16, 168 |
| Bme18I | GGWCC | 1 cut(s) | 568 |
| BmgT120I | GGNCC | 3 cut(s) | 13, 44, 568 |
| BmiI | GGNNCC | 1 cut(s) | 491 |
| BmrFI | CCNGG | 2 cut(s) | 16, 168 |
| BmrI | ACTGGG | 1 cut(s) | 982 |
| BmsI | GCATC | 4 cut(s) | 408, 928, 985, 1302 |
| BmuI | ACTGGG | 1 cut(s) | 982 |
| BpmI | CTGGAG | 1 cut(s) | 796 |
| Bpu10I | CCTNAGC | 2 cut(s) | 309, 846 |
| BpuMI | CCSGG | 1 cut(s) | 16 |
| Bsa29I | ATCGAT | 1 cut(s) | 866 |
| BsaAI | YACGTR | 1 cut(s) | 179 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1154 |
| BsaJI | CCNNGG | 2 cut(s) | 472, 829 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 365, 395 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 499 |
| Bse118I | RCCGGY | 1 cut(s) | 1256 |
| Bse1I | ACTGG | 3 cut(s) | 733, 977, 1354 |
| Bse21I | CCTNAGG | 2 cut(s) | 708, 1168 |
| Bse3DI | GCAATG | 2 cut(s) | 303, 954 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1154 |
| BseBI | CCWGG | 1 cut(s) | 168 |
| BseCI | ATCGAT | 1 cut(s) | 866 |
| BseDI | CCNNGG | 2 cut(s) | 472, 829 |
| BseGI | GGATG | 5 cut(s) | 613, 808, 1150, 1155, 1225 |
| BseJI | GATNNNNATC | 1 cut(s) | 1154 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 499 |
| BseMI | GCAATG | 2 cut(s) | 303, 954 |
| BseMII | CTCAG | 4 cut(s) | 150, 323, 722, 837 |
| BseNI | ACTGG | 3 cut(s) | 733, 977, 1354 |
| BseRI | GAGGAG | 4 cut(s) | 602, 659, 662, 1039 |
| BseXI | GCAGC | 5 cut(s) | 489, 517, 1001, 1068, 1247 |
| Bsh1236I | CGCG | 1 cut(s) | 936 |
| BshFI | GGCC | 5 cut(s) | 14, 46, 471, 964, 1118 |
| BshNI | GGYRCC | 1 cut(s) | 489 |
| BshVI | ATCGAT | 1 cut(s) | 866 |
| BsiSI | CCGG | 2 cut(s) | 16, 1257 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 499 |
| BsmAI | GTCTC | 1 cut(s) | 963 |
| BsnI | GGCC | 5 cut(s) | 14, 46, 471, 964, 1118 |
| Bsp143I | GATC | 5 cut(s) | 789, 867, 1060, 1149, 1336 |
| Bsp19I | CCATGG | 1 cut(s) | 829 |
| BspACI | CCGC | 4 cut(s) | 366, 449, 934, 1003 |
| BspANI | GGCC | 5 cut(s) | 14, 46, 471, 964, 1118 |
| BspCNI | CTCAG | 4 cut(s) | 151, 322, 721, 838 |
| BspDI | ATCGAT | 1 cut(s) | 866 |
| BspFNI | CGCG | 1 cut(s) | 936 |
| BspHI | TCATGA | 1 cut(s) | 1063 |
| BspLI | GGNNCC | 1 cut(s) | 491 |
| BspMAI | CTGCAG | 1 cut(s) | 991 |
| BspPI | GGATC | 2 cut(s) | 1157, 1331 |
| BspT107I | GGYRCC | 1 cut(s) | 489 |
| BspTI | CTTAAG | 1 cut(s) | 1106 |
| BsrDI | GCAATG | 2 cut(s) | 303, 954 |
| BsrFI | RCCGGY | 1 cut(s) | 1256 |
| BsrI | ACTGG | 3 cut(s) | 733, 977, 1354 |
| BssAI | RCCGGY | 1 cut(s) | 1256 |
| BssECI | CCNNGG | 2 cut(s) | 472, 829 |
| BssMI | GATC | 5 cut(s) | 789, 867, 1060, 1149, 1336 |
| BssT1I | CCWWGG | 2 cut(s) | 472, 829 |
| Bst2UI | CCWGG | 1 cut(s) | 168 |
| Bst6I | CTCTTC | 2 cut(s) | 80, 282 |
| BstAFI | CTTAAG | 1 cut(s) | 1106 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 995 |
| BstBAI | YACGTR | 1 cut(s) | 179 |
| BstC8I | GCNNGC | 4 cut(s) | 48, 423, 818, 1258 |
| BstDEI | CTNAG | 5 cut(s) | 159, 309, 708, 846, 1168 |
| BstDSI | CCRYGG | 1 cut(s) | 829 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 497 |
| BstF5I | GGATG | 5 cut(s) | 613, 808, 1150, 1155, 1225 |
| BstFNI | CGCG | 1 cut(s) | 936 |
| BstKTI | GATC | 5 cut(s) | 792, 870, 1063, 1152, 1339 |
| BstMAI | GTCTC | 1 cut(s) | 963 |
| BstMBI | GATC | 5 cut(s) | 789, 867, 1060, 1149, 1336 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 477, 539, 995, 1124 |
| BstNI | CCWGG | 1 cut(s) | 168 |
| BstNSI | RCATGY | 1 cut(s) | 954 |
| BstSCI | CCNGG | 2 cut(s) | 14, 166 |
| BstSFI | CTRYAG | 1 cut(s) | 987 |
| BstUI | CGCG | 1 cut(s) | 936 |
| BstV1I | GCAGC | 5 cut(s) | 489, 517, 1001, 1068, 1247 |
| BstX2I | RGATCY | 1 cut(s) | 1336 |
| BstYI | RGATCY | 1 cut(s) | 1336 |
| Bsu15I | ATCGAT | 1 cut(s) | 866 |
| Bsu36I | CCTNAGG | 2 cut(s) | 708, 1168 |
| BsuI | GTATCC | 1 cut(s) | 174 |
| BsuRI | GGCC | 5 cut(s) | 14, 46, 471, 964, 1118 |
| BsuTUI | ATCGAT | 1 cut(s) | 866 |
| BtgI | CCRYGG | 1 cut(s) | 829 |
| BtgZI | GCGATG | 2 cut(s) | 413, 951 |
| BtsCI | GGATG | 5 cut(s) | 613, 808, 1150, 1155, 1225 |
| BtsI | GCAGTG | 2 cut(s) | 57, 984 |
| BtsIMutI | CAGTG | 2 cut(s) | 57, 984 |
| Cac8I | GCNNGC | 4 cut(s) | 48, 423, 818, 1258 |
| CciI | TCATGA | 1 cut(s) | 1063 |
| Cfr10I | RCCGGY | 1 cut(s) | 1256 |
| Cfr13I | GGNCC | 3 cut(s) | 13, 44, 568 |
| ClaI | ATCGAT | 1 cut(s) | 866 |
| Csp6I | GTAC | 2 cut(s) | 176, 948 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 709, 744, 1074, 1109 |
| CviAII | CATG | 8 cut(s) | 738, 830, 951, 1064, 1122, 1231, 1240, 1321 |
| CviQI | GTAC | 2 cut(s) | 176, 948 |
| DdeI | CTNAG | 5 cut(s) | 159, 309, 708, 846, 1168 |
| DpnI | GATC | 5 cut(s) | 791, 869, 1062, 1151, 1338 |
| DpnII | GATC | 5 cut(s) | 789, 867, 1060, 1149, 1336 |
| EaeI | YGGCCR | 2 cut(s) | 469, 1116 |
| Eam1104I | CTCTTC | 2 cut(s) | 80, 282 |
| EarI | CTCTTC | 2 cut(s) | 80, 282 |
| Eco130I | CCWWGG | 2 cut(s) | 472, 829 |
| Eco32I | GATATC | 1 cut(s) | 1190 |
| Eco47I | GGWCC | 1 cut(s) | 568 |
| Eco57I | CTGAAG | 3 cut(s) | 138, 801, 1195 |
| Eco81I | CCTNAGG | 2 cut(s) | 708, 1168 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 497 |
| EcoRII | CCWGG | 1 cut(s) | 166 |
| EcoRV | GATATC | 1 cut(s) | 1190 |
| EcoT14I | CCWWGG | 2 cut(s) | 472, 829 |
| EcoT22I | ATGCAT | 1 cut(s) | 956 |
| ErhI | CCWWGG | 2 cut(s) | 472, 829 |
| FaeI | CATG | 8 cut(s) | 741, 833, 954, 1067, 1125, 1234, 1243, 1324 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 352, 384 |
| FatI | CATG | 8 cut(s) | 737, 829, 950, 1063, 1121, 1230, 1239, 1320 |
| FauI | CCCGC | 1 cut(s) | 996 |
| FbaI | TGATCA | 1 cut(s) | 1060 |
| Fnu4HI | GCNGC | 6 cut(s) | 366, 478, 531, 990, 1082, 1261 |
| FokI | GGATG | 5 cut(s) | 620, 815, 1142, 1157, 1232 |
| Fsp4HI | GCNGC | 6 cut(s) | 366, 478, 531, 990, 1082, 1261 |
| FspBI | CTAG | 3 cut(s) | 281, 354, 966 |
| GluI | GCNGC | 6 cut(s) | 366, 478, 531, 990, 1082, 1261 |
| GsuI | CTGGAG | 1 cut(s) | 796 |
| HaeIII | GGCC | 5 cut(s) | 14, 46, 471, 964, 1118 |
| HapII | CCGG | 2 cut(s) | 16, 1257 |
| Hin1II | CATG | 8 cut(s) | 741, 833, 954, 1067, 1125, 1234, 1243, 1324 |
| HincII | GTYRAC | 1 cut(s) | 808 |
| HindII | GTYRAC | 1 cut(s) | 808 |
| HinfI | GANTC | 4 cut(s) | 428, 758, 809, 922 |
| HpaII | CCGG | 2 cut(s) | 16, 1257 |
| HphI | GGTGA | 3 cut(s) | 423, 862, 1144 |
| Hpy166II | GTNNAC | 3 cut(s) | 720, 746, 808 |
| Hpy188I | TCNGA | 5 cut(s) | 138, 387, 672, 860, 1214 |
| Hpy188III | TCNNGA | 3 cut(s) | 158, 311, 1064 |
| Hpy8I | GTNNAC | 3 cut(s) | 720, 746, 808 |
| HpyAV | CCTTC | 9 cut(s) | 55, 95, 113, 213, 776, 1030, 1135, 1209, 1237 |
| HpyCH4IV | ACGT | 2 cut(s) | 178, 1112 |
| HpyCH4V | TGCA | 7 cut(s) | 683, 700, 941, 954, 989, 998, 1263 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 477, 539, 995, 1124 |
| HpyF3I | CTNAG | 5 cut(s) | 159, 309, 708, 846, 1168 |
| HpySE526I | ACGT | 2 cut(s) | 178, 1112 |
| Hsp92II | CATG | 8 cut(s) | 741, 833, 954, 1067, 1125, 1234, 1243, 1324 |
| KroI | GCCGGC | 1 cut(s) | 1256 |
| KroNI | GCCGGC | 1 cut(s) | 1258 |
| Ksp22I | TGATCA | 1 cut(s) | 1060 |
| Kzo9I | GATC | 5 cut(s) | 789, 867, 1060, 1149, 1336 |
| LmnI | GCTCC | 3 cut(s) | 340, 613, 691 |
| Lsp1109I | GCAGC | 5 cut(s) | 489, 517, 1001, 1068, 1247 |
| LweI | GCATC | 4 cut(s) | 408, 928, 985, 1302 |
| MaeI | CTAG | 3 cut(s) | 281, 354, 966 |
| MaeII | ACGT | 2 cut(s) | 178, 1112 |
| MaeIII | GTNAC | 1 cut(s) | 442 |
| MalI | GATC | 5 cut(s) | 791, 869, 1062, 1151, 1338 |
| MboI | GATC | 5 cut(s) | 789, 867, 1060, 1149, 1336 |
| MfeI | CAATTG | 4 cut(s) | 348, 516, 942, 1128 |
| MflI | RGATCY | 1 cut(s) | 1336 |
| MlsI | TGGCCA | 2 cut(s) | 471, 1118 |
| MluCI | AATT | 9 cut(s) | 72, 348, 516, 522, 903, 942, 1090, 1128, 1178 |
| MluNI | TGGCCA | 2 cut(s) | 471, 1118 |
| MlyI | GAGTC | 2 cut(s) | 422, 803 |
| MmeI | TCCRAC | 1 cut(s) | 312 |
| Mox20I | TGGCCA | 2 cut(s) | 471, 1118 |
| Mph1103I | ATGCAT | 1 cut(s) | 956 |
| MroNI | GCCGGC | 1 cut(s) | 1256 |
| MroXI | GAANNNNTTC | 1 cut(s) | 381 |
| MscI | TGGCCA | 2 cut(s) | 471, 1118 |
| MseI | TTAA | 7 cut(s) | 270, 405, 560, 665, 912, 1014, 1107 |
| MslI | CAYNNNNRTG | 2 cut(s) | 797, 1268 |
| Msp20I | TGGCCA | 2 cut(s) | 471, 1118 |
| MspA1I | CMGCKG | 4 cut(s) | 425, 451, 480, 992 |
| MspCI | CTTAAG | 1 cut(s) | 1106 |
| MspI | CCGG | 2 cut(s) | 16, 1257 |
| MspR9I | CCNGG | 2 cut(s) | 16, 168 |
| MunI | CAATTG | 4 cut(s) | 348, 516, 942, 1128 |
| MvaI | CCWGG | 1 cut(s) | 168 |
| MvnI | CGCG | 1 cut(s) | 936 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 477, 539, 995, 1124 |
| NaeI | GCCGGC | 1 cut(s) | 1258 |
| NciI | CCSGG | 1 cut(s) | 16 |
| NcoI | CCATGG | 1 cut(s) | 829 |
| NdeII | GATC | 5 cut(s) | 789, 867, 1060, 1149, 1336 |
| NgoMIV | GCCGGC | 1 cut(s) | 1256 |
| NlaIII | CATG | 8 cut(s) | 741, 833, 954, 1067, 1125, 1234, 1243, 1324 |
| NlaIV | GGNNCC | 1 cut(s) | 491 |
| NmuCI | GTSAC | 1 cut(s) | 442 |
| NsiI | ATGCAT | 1 cut(s) | 956 |
| NspI | RCATGY | 1 cut(s) | 954 |
| PagI | TCATGA | 1 cut(s) | 1063 |
| PdiI | GCCGGC | 1 cut(s) | 1258 |
| PdmI | GAANNNNTTC | 1 cut(s) | 381 |
| PfeI | GAWTC | 2 cut(s) | 758, 922 |
| PkrI | GCNGC | 6 cut(s) | 367, 479, 532, 991, 1083, 1262 |
| PleI | GAGTC | 2 cut(s) | 422, 803 |
| PpsI | GAGTC | 2 cut(s) | 422, 803 |
| Ppu21I | YACGTR | 1 cut(s) | 179 |
| PshBI | ATTAAT | 1 cut(s) | 912 |
| Psp6I | CCWGG | 1 cut(s) | 166 |
| PspGI | CCWGG | 1 cut(s) | 166 |
| PspN4I | GGNNCC | 1 cut(s) | 491 |
| PspPI | GGNCC | 3 cut(s) | 13, 44, 568 |
| PstI | CTGCAG | 1 cut(s) | 991 |
| PsuI | RGATCY | 1 cut(s) | 1336 |
| PvuII | CAGCTG | 3 cut(s) | 425, 480, 992 |
| RsaI | GTAC | 2 cut(s) | 177, 949 |
| RsaNI | GTAC | 2 cut(s) | 176, 948 |
| RseI | CAYNNNNRTG | 2 cut(s) | 797, 1268 |
| SaqAI | TTAA | 7 cut(s) | 270, 405, 560, 665, 912, 1014, 1107 |
| SatI | GCNGC | 6 cut(s) | 366, 478, 531, 990, 1082, 1261 |
| Sau3AI | GATC | 5 cut(s) | 789, 867, 1060, 1149, 1336 |
| Sau96I | GGNCC | 3 cut(s) | 13, 44, 568 |
| SchI | GAGTC | 2 cut(s) | 422, 803 |
| ScrFI | CCNGG | 2 cut(s) | 16, 168 |
| SfaNI | GCATC | 4 cut(s) | 408, 928, 985, 1302 |
| SfcI | CTRYAG | 1 cut(s) | 987 |
| SinI | GGWCC | 1 cut(s) | 568 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 797, 1268 |
| SmlI | CTYRAG | 1 cut(s) | 1106 |
| SmoI | CTYRAG | 1 cut(s) | 1106 |
| Sse9I | AATT | 9 cut(s) | 72, 348, 516, 522, 903, 942, 1090, 1128, 1178 |
| SsiI | CCGC | 4 cut(s) | 366, 449, 934, 1003 |
| SspI | AATATT | 1 cut(s) | 727 |
| SspMI | CTAG | 3 cut(s) | 281, 354, 966 |
| StyD4I | CCNGG | 2 cut(s) | 14, 166 |
| StyI | CCWWGG | 2 cut(s) | 472, 829 |
| TaiI | ACGT | 2 cut(s) | 181, 1115 |
| TaqI | TCGA | 4 cut(s) | 66, 635, 866, 1307 |
| TasI | AATT | 9 cut(s) | 72, 348, 516, 522, 903, 942, 1090, 1128, 1178 |
| TauI | GCSGC | 1 cut(s) | 368 |
| TfiI | GAWTC | 2 cut(s) | 758, 922 |
| Tru1I | TTAA | 7 cut(s) | 270, 405, 560, 665, 912, 1014, 1107 |
| Tru9I | TTAA | 7 cut(s) | 270, 405, 560, 665, 912, 1014, 1107 |
| TscAI | CASTG | 2 cut(s) | 57, 991 |
| TseFI | GTSAC | 1 cut(s) | 442 |
| TseI | GCWGC | 5 cut(s) | 477, 530, 989, 1081, 1260 |
| Tsp45I | GTSAC | 1 cut(s) | 442 |
| TspDTI | ATGAA | 4 cut(s) | 206, 609, 750, 1256 |
| TspRI | CASTG | 2 cut(s) | 57, 991 |
| Vha464I | CTTAAG | 1 cut(s) | 1106 |
| VpaK11BI | GGWCC | 1 cut(s) | 568 |
| VspI | ATTAAT | 1 cut(s) | 912 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 497 |
| XceI | RCATGY | 1 cut(s) | 954 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 328 |
| XmnI | GAANNNNTTC | 1 cut(s) | 381 |
| XspI | CTAG | 3 cut(s) | 281, 354, 966 |
| Zsp2I | ATGCAT | 1 cut(s) | 956 |