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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 792 |
| AccB1I | GGYRCC | 1 cut(s) | 1534 |
| AccII | CGCG | 2 cut(s) | 553, 1398 |
| AccIII | TCCGGA | 1 cut(s) | 1081 |
| AciI | CCGC | 6 cut(s) | 154, 172, 327, 343, 959, 1268 |
| AclWI | GGATC | 2 cut(s) | 259, 1016 |
| AcoI | YGGCCR | 1 cut(s) | 1499 |
| AcuI | CTGAAG | 2 cut(s) | 1191, 1221 |
| AfaI | GTAC | 5 cut(s) | 57, 259, 374, 741, 1486 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 51, 601 |
| AgsI | TTSAA | 8 cut(s) | 352, 661, 671, 812, 1019, 1032, 1151, 1334 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 138 |
| AhlI | ACTAGT | 1 cut(s) | 1003 |
| AjnI | CCWGG | 4 cut(s) | 730, 1024, 1496, 1522 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 827, 859, 1097, 1129 |
| Alw21I | GWGCWC | 2 cut(s) | 713, 1095 |
| Alw26I | GTCTC | 5 cut(s) | 674, 809, 1209, 1250, 1405 |
| AlwI | GGATC | 2 cut(s) | 259, 1016 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 496 |
| Aor13HI | TCCGGA | 1 cut(s) | 1081 |
| AoxI | GGCC | 1 cut(s) | 1499 |
| ApeKI | GCWGC | 9 cut(s) | 65, 68, 112, 218, 329, 496, 982, 1133, 1265 |
| AseI | ATTAAT | 1 cut(s) | 189 |
| AspLEI | GCGC | 2 cut(s) | 553, 1398 |
| AspS9I | GGNCC | 1 cut(s) | 1270 |
| AsuHPI | GGTGA | 6 cut(s) | 142, 328, 533, 640, 987, 1100 |
| AvaII | GGWCC | 1 cut(s) | 1270 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1476, 1509 |
| BalI | TGGCCA | 1 cut(s) | 1501 |
| BanI | GGYRCC | 1 cut(s) | 1534 |
| BanII | GRGCYC | 1 cut(s) | 1095 |
| Bbv12I | GWGCWC | 2 cut(s) | 713, 1095 |
| BbvCI | CCTCAGC | 1 cut(s) | 918 |
| BbvI | GCAGC | 9 cut(s) | 77, 80, 99, 205, 316, 483, 969, 1145, 1252 |
| BccI | CCATC | 3 cut(s) | 735, 872, 965 |
| BceAI | ACGGC | 2 cut(s) | 653, 1206 |
| BciT130I | CCWGG | 4 cut(s) | 732, 1026, 1498, 1524 |
| BciVI | GTATCC | 1 cut(s) | 546 |
| BclI | TGATCA | 2 cut(s) | 159, 1354 |
| BcoDI | GTCTC | 5 cut(s) | 674, 809, 1209, 1250, 1405 |
| BcuI | ACTAGT | 1 cut(s) | 1003 |
| BfaI | CTAG | 2 cut(s) | 72, 1004 |
| BfuAI | ACCTGC | 1 cut(s) | 792 |
| BfuI | GTATCC | 1 cut(s) | 546 |
| Bme1390I | CCNGG | 4 cut(s) | 732, 1026, 1498, 1524 |
| Bme18I | GGWCC | 1 cut(s) | 1270 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 138 |
| BmgT120I | GGNCC | 1 cut(s) | 1270 |
| BmiI | GGNNCC | 4 cut(s) | 204, 1178, 1227, 1536 |
| BmrFI | CCNGG | 4 cut(s) | 732, 1026, 1498, 1524 |
| BmsI | GCATC | 5 cut(s) | 422, 472, 1120, 1355, 1417 |
| BpmI | CTGGAG | 3 cut(s) | 402, 771, 1545 |
| Bpu10I | CCTNAGC | 2 cut(s) | 399, 918 |
| Bsa29I | ATCGAT | 2 cut(s) | 390, 430 |
| BsaAI | YACGTR | 1 cut(s) | 257 |
| BsaBI | GATNNNNATC | 1 cut(s) | 426 |
| BsaJI | CCNNGG | 1 cut(s) | 1522 |
| BsaWI | WCCGGW | 1 cut(s) | 1081 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 51, 601 |
| Bse1I | ACTGG | 2 cut(s) | 1290, 1445 |
| Bse8I | GATNNNNATC | 1 cut(s) | 426 |
| BseAI | TCCGGA | 1 cut(s) | 1081 |
| BseBI | CCWGG | 4 cut(s) | 732, 1026, 1498, 1524 |
| BseCI | ATCGAT | 2 cut(s) | 390, 430 |
| BseDI | CCNNGG | 1 cut(s) | 1522 |
| BseGI | GGATG | 4 cut(s) | 13, 727, 864, 1459 |
| BseJI | GATNNNNATC | 1 cut(s) | 426 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 51, 601 |
| BseMII | CTCAG | 2 cut(s) | 390, 909 |
| BseNI | ACTGG | 2 cut(s) | 1290, 1445 |
| BseRI | GAGGAG | 4 cut(s) | 759, 935, 1217, 1220 |
| BseXI | GCAGC | 9 cut(s) | 77, 80, 99, 205, 316, 483, 969, 1145, 1252 |
| BsgI | GTGCAG | 2 cut(s) | 695, 842 |
| Bsh1236I | CGCG | 2 cut(s) | 553, 1398 |
| Bsh1285I | CGRYCG | 1 cut(s) | 613 |
| BshFI | GGCC | 1 cut(s) | 1501 |
| BshNI | GGYRCC | 1 cut(s) | 1534 |
| BshVI | ATCGAT | 2 cut(s) | 390, 430 |
| BsiEI | CGRYCG | 1 cut(s) | 613 |
| BsiHKAI | GWGCWC | 2 cut(s) | 713, 1095 |
| BsiSI | CCGG | 1 cut(s) | 1082 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 51, 601 |
| BsmAI | GTCTC | 5 cut(s) | 674, 809, 1209, 1250, 1405 |
| BsmBI | CGTCTC | 3 cut(s) | 674, 1250, 1405 |
| BsnI | GGCC | 1 cut(s) | 1501 |
| Bsp1286I | GDGCHC | 2 cut(s) | 713, 1095 |
| Bsp13I | TCCGGA | 1 cut(s) | 1081 |
| Bsp143I | GATC | 5 cut(s) | 159, 264, 610, 1021, 1354 |
| BspACI | CCGC | 6 cut(s) | 154, 172, 327, 343, 959, 1268 |
| BspANI | GGCC | 1 cut(s) | 1501 |
| BspCNI | CTCAG | 2 cut(s) | 391, 910 |
| BspDI | ATCGAT | 2 cut(s) | 390, 430 |
| BspEI | TCCGGA | 1 cut(s) | 1081 |
| BspFNI | CGCG | 2 cut(s) | 553, 1398 |
| BspLI | GGNNCC | 4 cut(s) | 204, 1178, 1227, 1536 |
| BspMI | ACCTGC | 1 cut(s) | 792 |
| BspPI | GGATC | 2 cut(s) | 259, 1016 |
| BspT107I | GGYRCC | 1 cut(s) | 1534 |
| BsrI | ACTGG | 2 cut(s) | 1290, 1445 |
| BssECI | CCNNGG | 1 cut(s) | 1522 |
| BssMI | GATC | 5 cut(s) | 159, 264, 610, 1021, 1354 |
| Bst2UI | CCWGG | 4 cut(s) | 732, 1026, 1498, 1524 |
| Bst4CI | ACNGT | 5 cut(s) | 181, 545, 820, 1088, 1143 |
| Bst6I | CTCTTC | 4 cut(s) | 807, 846, 1103, 1146 |
| BstBAI | YACGTR | 1 cut(s) | 257 |
| BstC8I | GCNNGC | 1 cut(s) | 927 |
| BstDEI | CTNAG | 5 cut(s) | 48, 250, 399, 918, 1059 |
| BstF5I | GGATG | 4 cut(s) | 13, 727, 864, 1459 |
| BstFNI | CGCG | 2 cut(s) | 553, 1398 |
| BstHHI | GCGC | 2 cut(s) | 553, 1398 |
| BstKTI | GATC | 5 cut(s) | 162, 267, 613, 1024, 1357 |
| BstMAI | GTCTC | 5 cut(s) | 674, 809, 1209, 1250, 1405 |
| BstMBI | GATC | 5 cut(s) | 159, 264, 610, 1021, 1354 |
| BstMCI | CGRYCG | 1 cut(s) | 613 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 118, 947, 956 |
| BstNI | CCWGG | 4 cut(s) | 732, 1026, 1498, 1524 |
| BstNSI | RCATGY | 1 cut(s) | 1058 |
| BstSCI | CCNGG | 4 cut(s) | 730, 1024, 1496, 1522 |
| BstUI | CGCG | 2 cut(s) | 553, 1398 |
| BstV1I | GCAGC | 9 cut(s) | 77, 80, 99, 205, 316, 483, 969, 1145, 1252 |
| BstX2I | RGATCY | 2 cut(s) | 264, 1021 |
| BstYI | RGATCY | 2 cut(s) | 264, 1021 |
| Bsu15I | ATCGAT | 2 cut(s) | 390, 430 |
| BsuI | GTATCC | 1 cut(s) | 546 |
| BsuRI | GGCC | 1 cut(s) | 1501 |
| BsuTUI | ATCGAT | 2 cut(s) | 390, 430 |
| BtsCI | GGATG | 4 cut(s) | 13, 727, 864, 1459 |
| BtsI | GCAGTG | 1 cut(s) | 1107 |
| BtsIMutI | CAGTG | 4 cut(s) | 825, 1107, 1452, 1477 |
| BveI | ACCTGC | 1 cut(s) | 792 |
| Cac8I | GCNNGC | 1 cut(s) | 927 |
| CaiI | CAGNNNCTG | 1 cut(s) | 496 |
| CfoI | GCGC | 2 cut(s) | 553, 1398 |
| Cfr13I | GGNCC | 1 cut(s) | 1270 |
| ClaI | ATCGAT | 2 cut(s) | 390, 430 |
| CseI | GACGC | 2 cut(s) | 1387, 1484 |
| Csp6I | GTAC | 5 cut(s) | 56, 258, 373, 740, 1485 |
| CviAII | CATG | 5 cut(s) | 1055, 1160, 1222, 1274, 1367 |
| CviQI | GTAC | 5 cut(s) | 56, 258, 373, 740, 1485 |
| DdeI | CTNAG | 5 cut(s) | 48, 250, 399, 918, 1059 |
| DpnI | GATC | 5 cut(s) | 161, 266, 612, 1023, 1356 |
| DpnII | GATC | 5 cut(s) | 159, 264, 610, 1021, 1354 |
| DraI | TTTAAA | 1 cut(s) | 1122 |
| DriI | GACNNNNNGTC | 1 cut(s) | 138 |
| EaeI | YGGCCR | 1 cut(s) | 1499 |
| Eam1104I | CTCTTC | 4 cut(s) | 807, 846, 1103, 1146 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 138 |
| EarI | CTCTTC | 4 cut(s) | 807, 846, 1103, 1146 |
| Ecl136II | GAGCTC | 1 cut(s) | 1093 |
| Eco24I | GRGCYC | 1 cut(s) | 1095 |
| Eco32I | GATATC | 2 cut(s) | 88, 321 |
| Eco47I | GGWCC | 1 cut(s) | 1270 |
| Eco53kI | GAGCTC | 1 cut(s) | 1093 |
| Eco57I | CTGAAG | 2 cut(s) | 1191, 1221 |
| EcoICRI | GAGCTC | 1 cut(s) | 1093 |
| EcoRII | CCWGG | 4 cut(s) | 730, 1024, 1496, 1522 |
| EcoRV | GATATC | 2 cut(s) | 88, 321 |
| EcoT22I | ATGCAT | 2 cut(s) | 437, 487 |
| EcoT38I | GRGCYC | 1 cut(s) | 1095 |
| Esp3I | CGTCTC | 3 cut(s) | 674, 1250, 1405 |
| FaeI | CATG | 5 cut(s) | 1058, 1163, 1225, 1277, 1370 |
| FatI | CATG | 5 cut(s) | 1054, 1159, 1221, 1273, 1366 |
| FauI | CCCGC | 1 cut(s) | 336 |
| FbaI | TGATCA | 2 cut(s) | 159, 1354 |
| FokI | GGATG | 4 cut(s) | 20, 714, 851, 1466 |
| FriOI | GRGCYC | 1 cut(s) | 1095 |
| FspBI | CTAG | 2 cut(s) | 72, 1004 |
| GlaI | GCGC | 2 cut(s) | 552, 1397 |
| GsuI | CTGGAG | 3 cut(s) | 402, 771, 1545 |
| HaeIII | GGCC | 1 cut(s) | 1501 |
| HapII | CCGG | 1 cut(s) | 1082 |
| HgaI | GACGC | 2 cut(s) | 1387, 1484 |
| HhaI | GCGC | 2 cut(s) | 553, 1398 |
| Hin1II | CATG | 5 cut(s) | 1058, 1163, 1225, 1277, 1370 |
| Hin6I | GCGC | 2 cut(s) | 551, 1396 |
| HinP1I | GCGC | 2 cut(s) | 551, 1396 |
| HinfI | GANTC | 3 cut(s) | 139, 292, 992 |
| HpaII | CCGG | 1 cut(s) | 1082 |
| HphI | GGTGA | 6 cut(s) | 142, 328, 533, 640, 987, 1100 |
| Hpy166II | GTNNAC | 3 cut(s) | 45, 1283, 1303 |
| Hpy188I | TCNGA | 2 cut(s) | 164, 702 |
| Hpy8I | GTNNAC | 3 cut(s) | 45, 1283, 1303 |
| HpyAV | CCTTC | 5 cut(s) | 850, 1025, 1166, 1444, 1552 |
| HpyCH4III | ACNGT | 5 cut(s) | 181, 545, 820, 1088, 1143 |
| HpyCH4IV | ACGT | 2 cut(s) | 93, 256 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 118, 947, 956 |
| HpyF3I | CTNAG | 5 cut(s) | 48, 250, 399, 918, 1059 |
| HpySE526I | ACGT | 2 cut(s) | 93, 256 |
| Hsp92II | CATG | 5 cut(s) | 1058, 1163, 1225, 1277, 1370 |
| HspAI | GCGC | 2 cut(s) | 551, 1396 |
| Kpn2I | TCCGGA | 1 cut(s) | 1081 |
| Ksp22I | TGATCA | 2 cut(s) | 159, 1354 |
| Kzo9I | GATC | 5 cut(s) | 159, 264, 610, 1021, 1354 |
| LmnI | GCTCC | 4 cut(s) | 493, 746, 922, 1231 |
| Lsp1109I | GCAGC | 9 cut(s) | 77, 80, 99, 205, 316, 483, 969, 1145, 1252 |
| LweI | GCATC | 5 cut(s) | 422, 472, 1120, 1355, 1417 |
| MaeI | CTAG | 2 cut(s) | 72, 1004 |
| MaeII | ACGT | 2 cut(s) | 93, 256 |
| MaeIII | GTNAC | 9 cut(s) | 94, 130, 140, 653, 993, 1186, 1434, 1462, 1472 |
| MalI | GATC | 5 cut(s) | 161, 266, 612, 1023, 1356 |
| MboI | GATC | 5 cut(s) | 159, 264, 610, 1021, 1354 |
| MboII | GAAGA | 6 cut(s) | 95, 824, 863, 1117, 1120, 1163 |
| MfeI | CAATTG | 2 cut(s) | 207, 1404 |
| MflI | RGATCY | 2 cut(s) | 264, 1021 |
| MhlI | GDGCHC | 2 cut(s) | 713, 1095 |
| MlsI | TGGCCA | 1 cut(s) | 1501 |
| MluNI | TGGCCA | 1 cut(s) | 1501 |
| MlyI | GAGTC | 2 cut(s) | 148, 1001 |
| MmeI | TCCRAC | 1 cut(s) | 387 |
| Mox20I | TGGCCA | 1 cut(s) | 1501 |
| Mph1103I | ATGCAT | 2 cut(s) | 437, 487 |
| MroI | TCCGGA | 1 cut(s) | 1081 |
| MscI | TGGCCA | 1 cut(s) | 1501 |
| MseI | TTAA | 4 cut(s) | 39, 189, 438, 1121 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1278 |
| Msp20I | TGGCCA | 1 cut(s) | 1501 |
| MspA1I | CMGCKG | 3 cut(s) | 329, 1136, 1360 |
| MspI | CCGG | 1 cut(s) | 1082 |
| MspR9I | CCNGG | 4 cut(s) | 732, 1026, 1498, 1524 |
| MunI | CAATTG | 2 cut(s) | 207, 1404 |
| MvaI | CCWGG | 4 cut(s) | 732, 1026, 1498, 1524 |
| MvnI | CGCG | 2 cut(s) | 553, 1398 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 118, 947, 956 |
| NdeII | GATC | 5 cut(s) | 159, 264, 610, 1021, 1354 |
| NlaIII | CATG | 5 cut(s) | 1058, 1163, 1225, 1277, 1370 |
| NlaIV | GGNNCC | 4 cut(s) | 204, 1178, 1227, 1536 |
| NmuCI | GTSAC | 5 cut(s) | 130, 140, 993, 1462, 1472 |
| NsiI | ATGCAT | 2 cut(s) | 437, 487 |
| NspI | RCATGY | 1 cut(s) | 1058 |
| PfeI | GAWTC | 1 cut(s) | 292 |
| Ple19I | CGATCG | 1 cut(s) | 613 |
| PleI | GAGTC | 2 cut(s) | 147, 1000 |
| PpsI | GAGTC | 2 cut(s) | 147, 1000 |
| Ppu21I | YACGTR | 1 cut(s) | 257 |
| PshBI | ATTAAT | 1 cut(s) | 189 |
| Psp124BI | GAGCTC | 1 cut(s) | 1095 |
| Psp6I | CCWGG | 4 cut(s) | 730, 1024, 1496, 1522 |
| PspGI | CCWGG | 4 cut(s) | 730, 1024, 1496, 1522 |
| PspN4I | GGNNCC | 4 cut(s) | 204, 1178, 1227, 1536 |
| PspPI | GGNCC | 1 cut(s) | 1270 |
| PstNI | CAGNNNCTG | 1 cut(s) | 496 |
| PsuI | RGATCY | 2 cut(s) | 264, 1021 |
| PvuI | CGATCG | 1 cut(s) | 613 |
| PvuII | CAGCTG | 2 cut(s) | 1136, 1360 |
| RsaI | GTAC | 5 cut(s) | 57, 259, 374, 741, 1486 |
| RsaNI | GTAC | 5 cut(s) | 56, 258, 373, 740, 1485 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1278 |
| SacI | GAGCTC | 1 cut(s) | 1095 |
| SaqAI | TTAA | 4 cut(s) | 39, 189, 438, 1121 |
| Sau3AI | GATC | 5 cut(s) | 159, 264, 610, 1021, 1354 |
| Sau96I | GGNCC | 1 cut(s) | 1270 |
| SchI | GAGTC | 2 cut(s) | 148, 1001 |
| ScrFI | CCNGG | 4 cut(s) | 732, 1026, 1498, 1524 |
| SduI | GDGCHC | 2 cut(s) | 713, 1095 |
| SfaNI | GCATC | 5 cut(s) | 422, 472, 1120, 1355, 1417 |
| SinI | GGWCC | 1 cut(s) | 1270 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1278 |
| SpeI | ACTAGT | 1 cut(s) | 1003 |
| SsiI | CCGC | 6 cut(s) | 154, 172, 327, 343, 959, 1268 |
| SspMI | CTAG | 2 cut(s) | 72, 1004 |
| SstI | GAGCTC | 1 cut(s) | 1095 |
| StyD4I | CCNGG | 4 cut(s) | 730, 1024, 1496, 1522 |
| TaaI | ACNGT | 5 cut(s) | 181, 545, 820, 1088, 1143 |
| TaiI | ACGT | 2 cut(s) | 96, 259 |
| TaqI | TCGA | 6 cut(s) | 390, 430, 609, 1200, 1349, 1411 |
| TatI | WGTACW | 1 cut(s) | 372 |
| TauI | GCSGC | 3 cut(s) | 157, 175, 962 |
| TfiI | GAWTC | 1 cut(s) | 292 |
| Tru1I | TTAA | 4 cut(s) | 39, 189, 438, 1121 |
| Tru9I | TTAA | 4 cut(s) | 39, 189, 438, 1121 |
| TscAI | CASTG | 4 cut(s) | 825, 1107, 1452, 1477 |
| TseFI | GTSAC | 5 cut(s) | 130, 140, 993, 1462, 1472 |
| TseI | GCWGC | 9 cut(s) | 65, 68, 112, 218, 329, 496, 982, 1133, 1265 |
| Tsp45I | GTSAC | 5 cut(s) | 130, 140, 993, 1462, 1472 |
| TspDTI | ATGAA | 5 cut(s) | 17, 762, 891, 1176, 1401 |
| TspGWI | ACGGA | 1 cut(s) | 808 |
| TspRI | CASTG | 4 cut(s) | 825, 1107, 1452, 1477 |
| VpaK11BI | GGWCC | 1 cut(s) | 1270 |
| VspI | ATTAAT | 1 cut(s) | 189 |
| XceI | RCATGY | 1 cut(s) | 1058 |
| XspI | CTAG | 2 cut(s) | 72, 1004 |
| Zsp2I | ATGCAT | 2 cut(s) | 437, 487 |