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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 253 |
| AclWI | GGATC | 2 cut(s) | 115, 128 |
| AfaI | GTAC | 2 cut(s) | 31, 328 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 131 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 2 cut(s) | 116, 203 |
| AhlI | ACTAGT | 1 cut(s) | 32 |
| AluBI | AGCT | 1 cut(s) | 88 |
| AluI | AGCT | 1 cut(s) | 88 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| AlwI | GGATC | 2 cut(s) | 115, 128 |
| AseI | ATTAAT | 1 cut(s) | 273 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BamHI | GGATCC | 1 cut(s) | 120 |
| BbsI | GAAGAC | 1 cut(s) | 210 |
| BccI | CCATC | 2 cut(s) | 71, 146 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BcuI | ACTAGT | 1 cut(s) | 32 |
| BfaI | CTAG | 2 cut(s) | 33, 99 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmiI | GGNNCC | 2 cut(s) | 6, 122 |
| BpiI | GAAGAC | 1 cut(s) | 210 |
| BsaAI | YACGTR | 1 cut(s) | 330 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 131 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 131 |
| BseMII | CTCAG | 1 cut(s) | 95 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 131 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsmI | GAATGC | 1 cut(s) | 135 |
| Bsp143I | GATC | 1 cut(s) | 120 |
| BspCNI | CTCAG | 1 cut(s) | 94 |
| BspLI | GGNNCC | 2 cut(s) | 6, 122 |
| BspPI | GGATC | 2 cut(s) | 115, 128 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BssMI | GATC | 1 cut(s) | 120 |
| Bst4CI | ACNGT | 1 cut(s) | 24 |
| Bst6I | CTCTTC | 1 cut(s) | 132 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstBAI | YACGTR | 1 cut(s) | 330 |
| BstDEI | CTNAG | 2 cut(s) | 81, 240 |
| BstKTI | GATC | 1 cut(s) | 123 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMBI | GATC | 1 cut(s) | 120 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 293 |
| BstSNI | TACGTA | 1 cut(s) | 330 |
| BstV2I | GAAGAC | 1 cut(s) | 210 |
| BstX2I | RGATCY | 1 cut(s) | 120 |
| BstYI | RGATCY | 1 cut(s) | 120 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| Csp6I | GTAC | 2 cut(s) | 30, 327 |
| CviAII | CATG | 3 cut(s) | 178, 187, 231 |
| CviJI | RGCY | 2 cut(s) | 88, 287 |
| CviKI_1 | RGCY | 2 cut(s) | 88, 287 |
| CviQI | GTAC | 2 cut(s) | 30, 327 |
| DdeI | CTNAG | 2 cut(s) | 81, 240 |
| DpnI | GATC | 1 cut(s) | 122 |
| DpnII | GATC | 1 cut(s) | 120 |
| Eam1104I | CTCTTC | 1 cut(s) | 132 |
| EarI | CTCTTC | 1 cut(s) | 132 |
| Eco105I | TACGTA | 1 cut(s) | 330 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| FaeI | CATG | 3 cut(s) | 181, 190, 234 |
| FaiI | YATR | 8 cut(s) | 78, 159, 172, 179, 188, 197, 232, 324 |
| FatI | CATG | 3 cut(s) | 177, 186, 230 |
| FspBI | CTAG | 2 cut(s) | 33, 99 |
| Hin1II | CATG | 3 cut(s) | 181, 190, 234 |
| HindIII | AAGCTT | 1 cut(s) | 86 |
| Hpy188I | TCNGA | 2 cut(s) | 84, 309 |
| Hpy188III | TCNNGA | 1 cut(s) | 140 |
| HpyAV | CCTTC | 1 cut(s) | 184 |
| HpyCH4III | ACNGT | 1 cut(s) | 24 |
| HpyCH4IV | ACGT | 2 cut(s) | 253, 329 |
| HpyCH4V | TGCA | 2 cut(s) | 167, 224 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 293 |
| HpyF3I | CTNAG | 2 cut(s) | 81, 240 |
| HpySE526I | ACGT | 2 cut(s) | 253, 329 |
| Hsp92II | CATG | 3 cut(s) | 181, 190, 234 |
| Kzo9I | GATC | 1 cut(s) | 120 |
| LpnPI | CCDG | 3 cut(s) | 12, 153, 276 |
| MaeI | CTAG | 2 cut(s) | 33, 99 |
| MaeII | ACGT | 2 cut(s) | 253, 329 |
| MaeIII | GTNAC | 2 cut(s) | 182, 254 |
| MalI | GATC | 1 cut(s) | 122 |
| MboI | GATC | 1 cut(s) | 120 |
| MboII | GAAGA | 4 cut(s) | 64, 119, 215, 278 |
| MfeI | CAATTG | 1 cut(s) | 111 |
| MflI | RGATCY | 1 cut(s) | 120 |
| MluCI | AATT | 3 cut(s) | 111, 198, 270 |
| MnlI | CCTC | 2 cut(s) | 9, 135 |
| MseI | TTAA | 4 cut(s) | 11, 90, 273, 315 |
| MslI | CAYNNNNRTG | 1 cut(s) | 162 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MunI | CAATTG | 1 cut(s) | 111 |
| Mva1269I | GAATGC | 1 cut(s) | 135 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 293 |
| NdeII | GATC | 1 cut(s) | 120 |
| NlaIII | CATG | 3 cut(s) | 181, 190, 234 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 122 |
| PctI | GAATGC | 1 cut(s) | 135 |
| Ppu21I | YACGTR | 1 cut(s) | 330 |
| PshBI | ATTAAT | 1 cut(s) | 273 |
| Psp1406I | AACGTT | 1 cut(s) | 253 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 122 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| PsuI | RGATCY | 1 cut(s) | 120 |
| RsaI | GTAC | 2 cut(s) | 31, 328 |
| RsaNI | GTAC | 2 cut(s) | 30, 327 |
| RseI | CAYNNNNRTG | 1 cut(s) | 162 |
| SaqAI | TTAA | 4 cut(s) | 11, 90, 273, 315 |
| Sau3AI | GATC | 1 cut(s) | 120 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| SetI | ASST | 4 cut(s) | 90, 256, 321, 332 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 162 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| SnaBI | TACGTA | 1 cut(s) | 330 |
| SpeI | ACTAGT | 1 cut(s) | 32 |
| Sse9I | AATT | 3 cut(s) | 111, 198, 270 |
| SspMI | CTAG | 2 cut(s) | 33, 99 |
| TaaI | ACNGT | 1 cut(s) | 24 |
| TaiI | ACGT | 2 cut(s) | 256, 332 |
| TasI | AATT | 3 cut(s) | 111, 198, 270 |
| Tru1I | TTAA | 4 cut(s) | 11, 90, 273, 315 |
| Tru9I | TTAA | 4 cut(s) | 11, 90, 273, 315 |
| TspDTI | ATGAA | 2 cut(s) | 203, 291 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| VspI | ATTAAT | 1 cut(s) | 273 |
| XspI | CTAG | 2 cut(s) | 33, 99 |