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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 7 |
| AccI | GTMKAC | 1 cut(s) | 348 |
| AccII | CGCG | 1 cut(s) | 114 |
| AccIII | TCCGGA | 1 cut(s) | 600 |
| AciI | CCGC | 1 cut(s) | 480 |
| AclWI | GGATC | 2 cut(s) | 515, 528 |
| AcuI | CTGAAG | 2 cut(s) | 153, 305 |
| AcyI | GRCGYC | 1 cut(s) | 8 |
| AfaI | GTAC | 1 cut(s) | 200 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 61, 530 |
| AgsI | TTSAA | 1 cut(s) | 217 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 333 |
| AjnI | CCWGG | 1 cut(s) | 561 |
| AluBI | AGCT | 3 cut(s) | 173, 314, 569 |
| AluI | AGCT | 3 cut(s) | 173, 314, 569 |
| AlwI | GGATC | 2 cut(s) | 515, 528 |
| Ama87I | CYCGRG | 1 cut(s) | 408 |
| Aor13HI | TCCGGA | 1 cut(s) | 600 |
| ApeKI | GCWGC | 2 cut(s) | 234, 311 |
| AspLEI | GCGC | 3 cut(s) | 10, 114, 498 |
| AsuHPI | GGTGA | 1 cut(s) | 119 |
| AvaI | CYCGRG | 1 cut(s) | 408 |
| AxyI | CCTNAGG | 1 cut(s) | 60 |
| BamHI | GGATCC | 1 cut(s) | 520 |
| BanI | GGYRCC | 1 cut(s) | 7 |
| BbsI | GAAGAC | 1 cut(s) | 332 |
| BbvI | GCAGC | 2 cut(s) | 246, 323 |
| BccI | CCATC | 1 cut(s) | 19 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 37, 71 |
| BciT130I | CCWGG | 1 cut(s) | 563 |
| BfmI | CTRYAG | 1 cut(s) | 261 |
| BfoI | RGCGCY | 1 cut(s) | 11 |
| BisI | GCNGC | 2 cut(s) | 235, 312 |
| BlsI | GCNGC | 2 cut(s) | 236, 313 |
| Bme1390I | CCNGG | 1 cut(s) | 563 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 333 |
| BmeT110I | CYCGRG | 1 cut(s) | 408 |
| BmiI | GGNNCC | 2 cut(s) | 9, 522 |
| BmrFI | CCNGG | 1 cut(s) | 563 |
| BmsI | GCATC | 1 cut(s) | 483 |
| BpiI | GAAGAC | 1 cut(s) | 332 |
| BsaHI | GRCGYC | 1 cut(s) | 8 |
| BsaJI | CCNNGG | 2 cut(s) | 528, 552 |
| BsaWI | WCCGGW | 1 cut(s) | 600 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 162, 192 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 61, 530 |
| Bse1I | ACTGG | 1 cut(s) | 309 |
| Bse21I | CCTNAGG | 1 cut(s) | 60 |
| Bse3DI | GCAATG | 1 cut(s) | 475 |
| BseAI | TCCGGA | 1 cut(s) | 600 |
| BseBI | CCWGG | 1 cut(s) | 563 |
| BseDI | CCNNGG | 2 cut(s) | 528, 552 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 61, 530 |
| BseMI | GCAATG | 1 cut(s) | 475 |
| BseMII | CTCAG | 2 cut(s) | 51, 459 |
| BseNI | ACTGG | 1 cut(s) | 309 |
| BseXI | GCAGC | 2 cut(s) | 246, 323 |
| BseYI | CCCAGC | 1 cut(s) | 464 |
| BsgI | GTGCAG | 1 cut(s) | 253 |
| Bsh1236I | CGCG | 1 cut(s) | 114 |
| BshNI | GGYRCC | 1 cut(s) | 7 |
| BsiHKCI | CYCGRG | 1 cut(s) | 408 |
| BsiSI | CCGG | 1 cut(s) | 601 |
| BslFI | GGGAC | 1 cut(s) | 521 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 61, 530 |
| BsmFI | GGGAC | 1 cut(s) | 521 |
| BsmI | GAATGC | 1 cut(s) | 482 |
| BsoBI | CYCGRG | 1 cut(s) | 408 |
| Bsp13I | TCCGGA | 1 cut(s) | 600 |
| Bsp143I | GATC | 2 cut(s) | 296, 520 |
| BspACI | CCGC | 1 cut(s) | 480 |
| BspCNI | CTCAG | 2 cut(s) | 52, 458 |
| BspEI | TCCGGA | 1 cut(s) | 600 |
| BspFNI | CGCG | 1 cut(s) | 114 |
| BspHI | TCATGA | 1 cut(s) | 501 |
| BspLI | GGNNCC | 2 cut(s) | 9, 522 |
| BspPI | GGATC | 2 cut(s) | 515, 528 |
| BspT107I | GGYRCC | 1 cut(s) | 7 |
| BsrDI | GCAATG | 1 cut(s) | 475 |
| BsrI | ACTGG | 1 cut(s) | 309 |
| BssECI | CCNNGG | 2 cut(s) | 528, 552 |
| BssMI | GATC | 2 cut(s) | 296, 520 |
| BssNI | GRCGYC | 1 cut(s) | 8 |
| BssT1I | CCWWGG | 2 cut(s) | 528, 552 |
| Bst2UI | CCWGG | 1 cut(s) | 563 |
| Bst4CI | ACNGT | 4 cut(s) | 178, 265, 335, 377 |
| Bst6I | CTCTTC | 1 cut(s) | 348 |
| BstACI | GRCGYC | 1 cut(s) | 8 |
| BstC8I | GCNNGC | 1 cut(s) | 154 |
| BstDEI | CTNAG | 2 cut(s) | 60, 445 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 59 |
| BstFNI | CGCG | 1 cut(s) | 114 |
| BstH2I | RGCGCY | 1 cut(s) | 11 |
| BstHHI | GCGC | 3 cut(s) | 10, 114, 498 |
| BstKTI | GATC | 2 cut(s) | 299, 523 |
| BstMBI | GATC | 2 cut(s) | 296, 520 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 243 |
| BstNI | CCWGG | 1 cut(s) | 563 |
| BstSCI | CCNGG | 1 cut(s) | 561 |
| BstSFI | CTRYAG | 1 cut(s) | 261 |
| BstUI | CGCG | 1 cut(s) | 114 |
| BstV1I | GCAGC | 2 cut(s) | 246, 323 |
| BstV2I | GAAGAC | 1 cut(s) | 332 |
| BstX2I | RGATCY | 1 cut(s) | 520 |
| BstYI | RGATCY | 1 cut(s) | 520 |
| Bsu36I | CCTNAGG | 1 cut(s) | 60 |
| BtsIMutI | CAGTG | 1 cut(s) | 382 |
| Cac8I | GCNNGC | 1 cut(s) | 154 |
| CciI | TCATGA | 1 cut(s) | 501 |
| CfoI | GCGC | 3 cut(s) | 10, 114, 498 |
| Csp6I | GTAC | 1 cut(s) | 199 |
| CviAII | CATG | 4 cut(s) | 157, 238, 502, 517 |
| CviJI | RGCY | 8 cut(s) | 173, 185, 224, 246, 314, 407, 569, 587 |
| CviKI_1 | RGCY | 8 cut(s) | 173, 185, 224, 246, 314, 407, 569, 587 |
| CviQI | GTAC | 1 cut(s) | 199 |
| DdeI | CTNAG | 2 cut(s) | 60, 445 |
| DinI | GGCGCC | 1 cut(s) | 9 |
| DpnI | GATC | 2 cut(s) | 298, 522 |
| DpnII | GATC | 2 cut(s) | 296, 520 |
| DraI | TTTAAA | 2 cut(s) | 21, 384 |
| DriI | GACNNNNNGTC | 1 cut(s) | 333 |
| Eam1104I | CTCTTC | 1 cut(s) | 348 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 333 |
| EarI | CTCTTC | 1 cut(s) | 348 |
| Eco130I | CCWWGG | 2 cut(s) | 528, 552 |
| Eco57I | CTGAAG | 2 cut(s) | 153, 305 |
| Eco81I | CCTNAGG | 1 cut(s) | 60 |
| Eco88I | CYCGRG | 1 cut(s) | 408 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 59 |
| EcoRII | CCWGG | 1 cut(s) | 561 |
| EcoT14I | CCWWGG | 2 cut(s) | 528, 552 |
| EgeI | GGCGCC | 1 cut(s) | 9 |
| EheI | GGCGCC | 1 cut(s) | 9 |
| ErhI | CCWWGG | 2 cut(s) | 528, 552 |
| FaeI | CATG | 4 cut(s) | 160, 241, 505, 520 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 83, 115 |
| FaqI | GGGAC | 1 cut(s) | 521 |
| FatI | CATG | 4 cut(s) | 156, 237, 501, 516 |
| FauI | CCCGC | 1 cut(s) | 473 |
| FblI | GTMKAC | 1 cut(s) | 348 |
| Fnu4HI | GCNGC | 2 cut(s) | 235, 312 |
| Fsp4HI | GCNGC | 2 cut(s) | 235, 312 |
| GlaI | GCGC | 3 cut(s) | 9, 113, 497 |
| GluI | GCNGC | 2 cut(s) | 235, 312 |
| GsaI | CCCAGC | 1 cut(s) | 468 |
| HaeII | RGCGCY | 1 cut(s) | 11 |
| HapII | CCGG | 1 cut(s) | 601 |
| HhaI | GCGC | 3 cut(s) | 10, 114, 498 |
| Hin1I | GRCGYC | 1 cut(s) | 8 |
| Hin1II | CATG | 4 cut(s) | 160, 241, 505, 520 |
| Hin6I | GCGC | 3 cut(s) | 8, 112, 496 |
| HinP1I | GCGC | 3 cut(s) | 8, 112, 496 |
| HincII | GTYRAC | 1 cut(s) | 349 |
| HindII | GTYRAC | 1 cut(s) | 349 |
| HindIII | AAGCTT | 1 cut(s) | 567 |
| HpaII | CCGG | 1 cut(s) | 601 |
| HphI | GGTGA | 1 cut(s) | 119 |
| Hpy166II | GTNNAC | 2 cut(s) | 349, 373 |
| Hpy188I | TCNGA | 1 cut(s) | 324 |
| Hpy188III | TCNNGA | 4 cut(s) | 300, 370, 502, 601 |
| Hpy8I | GTNNAC | 2 cut(s) | 349, 373 |
| Hpy99I | CGWCG | 1 cut(s) | 353 |
| HpyAV | CCTTC | 2 cut(s) | 130, 534 |
| HpyCH4III | ACNGT | 4 cut(s) | 178, 265, 335, 377 |
| HpyCH4IV | ACGT | 1 cut(s) | 418 |
| HpyCH4V | TGCA | 2 cut(s) | 152, 234 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 243 |
| HpyF3I | CTNAG | 2 cut(s) | 60, 445 |
| HpySE526I | ACGT | 1 cut(s) | 418 |
| Hsp92I | GRCGYC | 1 cut(s) | 8 |
| Hsp92II | CATG | 4 cut(s) | 160, 241, 505, 520 |
| HspAI | GCGC | 3 cut(s) | 8, 112, 496 |
| KasI | GGCGCC | 1 cut(s) | 7 |
| Kpn2I | TCCGGA | 1 cut(s) | 600 |
| Kzo9I | GATC | 2 cut(s) | 296, 520 |
| LmnI | GCTCC | 1 cut(s) | 170 |
| Lsp1109I | GCAGC | 2 cut(s) | 246, 323 |
| LweI | GCATC | 1 cut(s) | 483 |
| MaeII | ACGT | 1 cut(s) | 418 |
| MalI | GATC | 2 cut(s) | 298, 522 |
| MboI | GATC | 2 cut(s) | 296, 520 |
| MboII | GAAGA | 5 cut(s) | 6, 146, 173, 337, 365 |
| MfeI | CAATTG | 1 cut(s) | 84 |
| MflI | RGATCY | 1 cut(s) | 520 |
| MluCI | AATT | 7 cut(s) | 77, 84, 146, 165, 429, 630, 646 |
| Mly113I | GGCGCC | 1 cut(s) | 8 |
| MnlI | CCTC | 6 cut(s) | 55, 88, 134, 189, 349, 498 |
| MroI | TCCGGA | 1 cut(s) | 600 |
| MseI | TTAA | 3 cut(s) | 20, 383, 636 |
| MslI | CAYNNNNRTG | 1 cut(s) | 515 |
| MspI | CCGG | 1 cut(s) | 601 |
| MspR9I | CCNGG | 1 cut(s) | 563 |
| MunI | CAATTG | 1 cut(s) | 84 |
| Mva1269I | GAATGC | 1 cut(s) | 482 |
| MvaI | CCWGG | 1 cut(s) | 563 |
| MvnI | CGCG | 1 cut(s) | 114 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 243 |
| NarI | GGCGCC | 1 cut(s) | 8 |
| NdeII | GATC | 2 cut(s) | 296, 520 |
| NlaIII | CATG | 4 cut(s) | 160, 241, 505, 520 |
| NlaIV | GGNNCC | 2 cut(s) | 9, 522 |
| PagI | TCATGA | 1 cut(s) | 501 |
| PctI | GAATGC | 1 cut(s) | 482 |
| PkrI | GCNGC | 2 cut(s) | 236, 313 |
| PluTI | GGCGCC | 1 cut(s) | 11 |
| Psp6I | CCWGG | 1 cut(s) | 561 |
| PspFI | CCCAGC | 1 cut(s) | 464 |
| PspGI | CCWGG | 1 cut(s) | 561 |
| PspN4I | GGNNCC | 2 cut(s) | 9, 522 |
| PsuI | RGATCY | 1 cut(s) | 520 |
| RsaI | GTAC | 1 cut(s) | 200 |
| RsaNI | GTAC | 1 cut(s) | 199 |
| RseI | CAYNNNNRTG | 1 cut(s) | 515 |
| SalI | GTCGAC | 1 cut(s) | 347 |
| SaqAI | TTAA | 3 cut(s) | 20, 383, 636 |
| SatI | GCNGC | 2 cut(s) | 235, 312 |
| Sau3AI | GATC | 2 cut(s) | 296, 520 |
| ScrFI | CCNGG | 1 cut(s) | 563 |
| SetI | ASST | 7 cut(s) | 99, 122, 175, 200, 316, 421, 571 |
| SfaNI | GCATC | 1 cut(s) | 483 |
| SfcI | CTRYAG | 1 cut(s) | 261 |
| SfoI | GGCGCC | 1 cut(s) | 9 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 515 |
| Sse9I | AATT | 7 cut(s) | 77, 84, 146, 165, 429, 630, 646 |
| SsiI | CCGC | 1 cut(s) | 480 |
| SspDI | GGCGCC | 1 cut(s) | 7 |
| StyD4I | CCNGG | 1 cut(s) | 561 |
| StyI | CCWWGG | 2 cut(s) | 528, 552 |
| TaaI | ACNGT | 4 cut(s) | 178, 265, 335, 377 |
| TaiI | ACGT | 1 cut(s) | 421 |
| TaqI | TCGA | 4 cut(s) | 252, 316, 348, 474 |
| TasI | AATT | 7 cut(s) | 77, 84, 146, 165, 429, 630, 646 |
| Tru1I | TTAA | 3 cut(s) | 20, 383, 636 |
| Tru9I | TTAA | 3 cut(s) | 20, 383, 636 |
| TscAI | CASTG | 1 cut(s) | 382 |
| TseI | GCWGC | 2 cut(s) | 234, 311 |
| TspDTI | ATGAA | 4 cut(s) | 490, 561, 609, 621 |
| TspRI | CASTG | 1 cut(s) | 382 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 59 |
| XmiI | GTMKAC | 1 cut(s) | 348 |