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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 142 |
| AccII | CGCG | 3 cut(s) | 258, 260, 274 |
| AcoI | YGGCCR | 1 cut(s) | 158 |
| AcuI | CTGAAG | 1 cut(s) | 93 |
| AcyI | GRCGYC | 2 cut(s) | 110, 143 |
| AgsI | TTSAA | 1 cut(s) | 319 |
| AluBI | AGCT | 4 cut(s) | 13, 43, 48, 88 |
| AluI | AGCT | 4 cut(s) | 13, 43, 48, 88 |
| Alw21I | GWGCWC | 1 cut(s) | 90 |
| Alw26I | GTCTC | 3 cut(s) | 40, 172, 343 |
| AoxI | GGCC | 1 cut(s) | 158 |
| AspLEI | GCGC | 3 cut(s) | 145, 260, 276 |
| AspS9I | GGNCC | 1 cut(s) | 63 |
| AsuHPI | GGTGA | 3 cut(s) | 91, 123, 284 |
| AvaII | GGWCC | 1 cut(s) | 63 |
| BanI | GGYRCC | 1 cut(s) | 142 |
| BanII | GRGCYC | 1 cut(s) | 90 |
| Bbv12I | GWGCWC | 1 cut(s) | 90 |
| BccI | CCATC | 1 cut(s) | 235 |
| BceAI | ACGGC | 3 cut(s) | 36, 298, 303 |
| BcoDI | GTCTC | 3 cut(s) | 40, 172, 343 |
| BfoI | RGCGCY | 1 cut(s) | 146 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 287 |
| BisI | GCNGC | 4 cut(s) | 120, 206, 237, 329 |
| BlpI | GCTNAGC | 1 cut(s) | 44 |
| BlsI | GCNGC | 4 cut(s) | 121, 207, 238, 330 |
| Bme18I | GGWCC | 1 cut(s) | 63 |
| BmgT120I | GGNCC | 1 cut(s) | 63 |
| BmiI | GGNNCC | 3 cut(s) | 65, 144, 177 |
| BoxI | GACNNNNGTC | 1 cut(s) | 32 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 44 |
| BpuEI | CTTGAG | 1 cut(s) | 65 |
| BsaHI | GRCGYC | 2 cut(s) | 110, 143 |
| BsaI | GGTCTC | 1 cut(s) | 40 |
| BsaJI | CCNNGG | 2 cut(s) | 285, 365 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 340, 370 |
| Bse1I | ACTGG | 1 cut(s) | 144 |
| BseDI | CCNNGG | 2 cut(s) | 285, 365 |
| BseMII | CTCAG | 1 cut(s) | 58 |
| BseNI | ACTGG | 1 cut(s) | 144 |
| BseRI | GAGGAG | 3 cut(s) | 168, 291, 354 |
| Bsh1236I | CGCG | 3 cut(s) | 258, 260, 274 |
| BshFI | GGCC | 1 cut(s) | 160 |
| BshNI | GGYRCC | 1 cut(s) | 142 |
| BsiHKAI | GWGCWC | 1 cut(s) | 90 |
| BslFI | GGGAC | 1 cut(s) | 373 |
| BsmAI | GTCTC | 3 cut(s) | 40, 172, 343 |
| BsmFI | GGGAC | 1 cut(s) | 373 |
| BsnI | GGCC | 1 cut(s) | 160 |
| Bso31I | GGTCTC | 1 cut(s) | 40 |
| Bsp1286I | GDGCHC | 1 cut(s) | 90 |
| Bsp143I | GATC | 1 cut(s) | 68 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 44 |
| BspANI | GGCC | 1 cut(s) | 160 |
| BspCNI | CTCAG | 1 cut(s) | 57 |
| BspFNI | CGCG | 3 cut(s) | 258, 260, 274 |
| BspLI | GGNNCC | 3 cut(s) | 65, 144, 177 |
| BspT107I | GGYRCC | 1 cut(s) | 142 |
| BspTNI | GGTCTC | 1 cut(s) | 40 |
| BsrI | ACTGG | 1 cut(s) | 144 |
| BssECI | CCNNGG | 2 cut(s) | 285, 365 |
| BssMI | GATC | 1 cut(s) | 68 |
| BssNI | GRCGYC | 2 cut(s) | 110, 143 |
| Bst6I | CTCTTC | 1 cut(s) | 175 |
| BstACI | GRCGYC | 2 cut(s) | 110, 143 |
| BstDEI | CTNAG | 1 cut(s) | 44 |
| BstDSI | CCRYGG | 1 cut(s) | 285 |
| BstFNI | CGCG | 3 cut(s) | 258, 260, 274 |
| BstH2I | RGCGCY | 1 cut(s) | 146 |
| BstHHI | GCGC | 3 cut(s) | 145, 260, 276 |
| BstKTI | GATC | 1 cut(s) | 71 |
| BstMAI | GTCTC | 3 cut(s) | 40, 172, 343 |
| BstMBI | GATC | 1 cut(s) | 68 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 287 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 32 |
| BstUI | CGCG | 3 cut(s) | 258, 260, 274 |
| BsuRI | GGCC | 1 cut(s) | 160 |
| BtgI | CCRYGG | 1 cut(s) | 285 |
| BtsIMutI | CAGTG | 1 cut(s) | 137 |
| CfoI | GCGC | 3 cut(s) | 145, 260, 276 |
| Cfr13I | GGNCC | 1 cut(s) | 63 |
| CseI | GACGC | 2 cut(s) | 118, 280 |
| DdeI | CTNAG | 1 cut(s) | 44 |
| DinI | GGCGCC | 1 cut(s) | 144 |
| DpnI | GATC | 1 cut(s) | 70 |
| DpnII | GATC | 1 cut(s) | 68 |
| EaeI | YGGCCR | 1 cut(s) | 158 |
| Eam1104I | CTCTTC | 1 cut(s) | 175 |
| EarI | CTCTTC | 1 cut(s) | 175 |
| EciI | GGCGGA | 4 cut(s) | 80, 294, 315, 361 |
| Ecl136II | GAGCTC | 1 cut(s) | 88 |
| Eco24I | GRGCYC | 1 cut(s) | 90 |
| Eco31I | GGTCTC | 1 cut(s) | 40 |
| Eco47I | GGWCC | 1 cut(s) | 63 |
| Eco53kI | GAGCTC | 1 cut(s) | 88 |
| Eco57I | CTGAAG | 1 cut(s) | 93 |
| EcoICRI | GAGCTC | 1 cut(s) | 88 |
| EcoT38I | GRGCYC | 1 cut(s) | 90 |
| EgeI | GGCGCC | 1 cut(s) | 144 |
| EheI | GGCGCC | 1 cut(s) | 144 |
| FaqI | GGGAC | 1 cut(s) | 373 |
| Fnu4HI | GCNGC | 4 cut(s) | 120, 206, 237, 329 |
| FriOI | GRGCYC | 1 cut(s) | 90 |
| Fsp4HI | GCNGC | 4 cut(s) | 120, 206, 237, 329 |
| GlaI | GCGC | 3 cut(s) | 144, 259, 275 |
| GluI | GCNGC | 4 cut(s) | 120, 206, 237, 329 |
| HaeII | RGCGCY | 1 cut(s) | 146 |
| HaeIII | GGCC | 1 cut(s) | 160 |
| HgaI | GACGC | 2 cut(s) | 118, 280 |
| HhaI | GCGC | 3 cut(s) | 145, 260, 276 |
| Hin1I | GRCGYC | 2 cut(s) | 110, 143 |
| Hin6I | GCGC | 3 cut(s) | 143, 258, 274 |
| HinP1I | GCGC | 3 cut(s) | 143, 258, 274 |
| HinfI | GANTC | 3 cut(s) | 165, 263, 361 |
| HphI | GGTGA | 3 cut(s) | 91, 123, 284 |
| Hpy188I | TCNGA | 4 cut(s) | 27, 58, 73, 369 |
| Hpy188III | TCNNGA | 1 cut(s) | 37 |
| Hpy99I | CGWCG | 1 cut(s) | 390 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 287 |
| HpyF3I | CTNAG | 1 cut(s) | 44 |
| Hsp92I | GRCGYC | 2 cut(s) | 110, 143 |
| HspAI | GCGC | 3 cut(s) | 143, 258, 274 |
| KasI | GGCGCC | 1 cut(s) | 142 |
| Kzo9I | GATC | 1 cut(s) | 68 |
| LmnI | GCTCC | 4 cut(s) | 53, 85, 93, 181 |
| LpnPI | CCDG | 2 cut(s) | 125, 361 |
| MaeIII | GTNAC | 1 cut(s) | 129 |
| MalI | GATC | 1 cut(s) | 70 |
| MboI | GATC | 1 cut(s) | 68 |
| MboII | GAAGA | 1 cut(s) | 162 |
| MhlI | GDGCHC | 1 cut(s) | 90 |
| Mly113I | GGCGCC | 1 cut(s) | 143 |
| MlyI | GAGTC | 3 cut(s) | 174, 257, 355 |
| MvnI | CGCG | 3 cut(s) | 258, 260, 274 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 287 |
| NarI | GGCGCC | 1 cut(s) | 143 |
| NdeII | GATC | 1 cut(s) | 68 |
| NlaIV | GGNNCC | 3 cut(s) | 65, 144, 177 |
| NmeAIII | GCCGAG | 1 cut(s) | 186 |
| NmuCI | GTSAC | 1 cut(s) | 129 |
| PflFI | GACNNNGTC | 1 cut(s) | 199 |
| PkrI | GCNGC | 4 cut(s) | 121, 207, 238, 330 |
| PleI | GAGTC | 3 cut(s) | 173, 257, 355 |
| PluTI | GGCGCC | 1 cut(s) | 146 |
| PpsI | GAGTC | 3 cut(s) | 173, 257, 355 |
| PshAI | GACNNNNGTC | 1 cut(s) | 32 |
| Psp124BI | GAGCTC | 1 cut(s) | 90 |
| PspN4I | GGNNCC | 3 cut(s) | 65, 144, 177 |
| PspPI | GGNCC | 1 cut(s) | 63 |
| PsyI | GACNNNGTC | 1 cut(s) | 199 |
| SacI | GAGCTC | 1 cut(s) | 90 |
| SatI | GCNGC | 4 cut(s) | 120, 206, 237, 329 |
| Sau3AI | GATC | 1 cut(s) | 68 |
| Sau96I | GGNCC | 1 cut(s) | 63 |
| SchI | GAGTC | 3 cut(s) | 174, 257, 355 |
| SduI | GDGCHC | 1 cut(s) | 90 |
| SetI | ASST | 7 cut(s) | 15, 45, 50, 90, 248, 297, 301 |
| SfoI | GGCGCC | 1 cut(s) | 144 |
| SinI | GGWCC | 1 cut(s) | 63 |
| SmlI | CTYRAG | 1 cut(s) | 80 |
| SmoI | CTYRAG | 1 cut(s) | 80 |
| SspDI | GGCGCC | 1 cut(s) | 142 |
| SstI | GAGCTC | 1 cut(s) | 90 |
| TaqI | TCGA | 1 cut(s) | 38 |
| TauI | GCSGC | 4 cut(s) | 122, 208, 239, 331 |
| TscAI | CASTG | 1 cut(s) | 144 |
| TseFI | GTSAC | 1 cut(s) | 129 |
| Tsp45I | GTSAC | 1 cut(s) | 129 |
| TspGWI | ACGGA | 3 cut(s) | 40, 76, 403 |
| TspRI | CASTG | 1 cut(s) | 144 |
| Tth111I | GACNNNGTC | 1 cut(s) | 199 |
| VpaK11BI | GGWCC | 1 cut(s) | 63 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 153 |