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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 452 |
| Acc16I | TGCGCA | 1 cut(s) | 834 |
| Acc36I | ACCTGC | 1 cut(s) | 1324 |
| AciI | CCGC | 4 cut(s) | 23, 150, 855, 1235 |
| AclWI | GGATC | 1 cut(s) | 835 |
| AcoI | YGGCCR | 1 cut(s) | 1358 |
| AcsI | RAATTY | 2 cut(s) | 71, 722 |
| AfaI | GTAC | 4 cut(s) | 121, 648, 1125, 1395 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 542, 631 |
| AgsI | TTSAA | 4 cut(s) | 445, 463, 686, 990 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 858 |
| AhlI | ACTAGT | 1 cut(s) | 494 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 618, 650 |
| AleI | CACNNNNGTG | 1 cut(s) | 1193 |
| AluBI | AGCT | 7 cut(s) | 621, 788, 878, 941, 1045, 1181, 1369 |
| AluI | AGCT | 7 cut(s) | 621, 788, 878, 941, 1045, 1181, 1369 |
| Alw26I | GTCTC | 3 cut(s) | 87, 623, 1270 |
| AlwI | GGATC | 1 cut(s) | 835 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1268 |
| AoxI | GGCC | 3 cut(s) | 225, 1143, 1358 |
| ApeKI | GCWGC | 4 cut(s) | 152, 697, 785, 800 |
| ApoI | RAATTY | 2 cut(s) | 71, 722 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 158, 190 |
| AspLEI | GCGC | 1 cut(s) | 835 |
| AspS9I | GGNCC | 1 cut(s) | 166 |
| AsuHPI | GGTGA | 3 cut(s) | 67, 1322, 1374 |
| AvaII | GGWCC | 1 cut(s) | 166 |
| BaeGI | GKGCMC | 1 cut(s) | 533 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 1385 |
| BbvI | GCAGC | 4 cut(s) | 139, 709, 797, 812 |
| BccI | CCATC | 6 cut(s) | 10, 177, 201, 349, 914, 1001 |
| BclI | TGATCA | 2 cut(s) | 1084, 1168 |
| BcoDI | GTCTC | 3 cut(s) | 87, 623, 1270 |
| BcuI | ACTAGT | 1 cut(s) | 494 |
| BfaI | CTAG | 6 cut(s) | 90, 477, 495, 789, 806, 1238 |
| BfuAI | ACCTGC | 1 cut(s) | 1324 |
| BglII | AGATCT | 1 cut(s) | 32 |
| BisI | GCNGC | 4 cut(s) | 153, 698, 786, 801 |
| BlpI | GCTNAGC | 1 cut(s) | 1046 |
| BlsI | GCNGC | 4 cut(s) | 154, 699, 787, 802 |
| Bme18I | GGWCC | 1 cut(s) | 166 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 858 |
| BmgT120I | GGNCC | 1 cut(s) | 166 |
| BmsI | GCATC | 2 cut(s) | 181, 754 |
| BpmI | CTGGAG | 1 cut(s) | 780 |
| Bpu10I | CCTNAGC | 1 cut(s) | 537 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1046 |
| BsaAI | YACGTR | 1 cut(s) | 1397 |
| BsaI | GGTCTC | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 2 cut(s) | 78, 519 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 22, 52, 558, 588, 888, 918 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 542, 631 |
| Bse3DI | GCAATG | 1 cut(s) | 316 |
| BseDI | CCNNGG | 2 cut(s) | 78, 519 |
| BseGI | GGATG | 4 cut(s) | 21, 925, 977, 1045 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 542, 631 |
| BseMI | GCAATG | 1 cut(s) | 316 |
| BseMII | CTCAG | 2 cut(s) | 528, 1125 |
| BseRI | GAGGAG | 1 cut(s) | 1295 |
| BseSI | GKGCMC | 1 cut(s) | 533 |
| BseXI | GCAGC | 4 cut(s) | 139, 709, 797, 812 |
| BshFI | GGCC | 3 cut(s) | 227, 1145, 1360 |
| BslFI | GGGAC | 1 cut(s) | 1113 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 542, 631 |
| BsmAI | GTCTC | 3 cut(s) | 87, 623, 1270 |
| BsmBI | CGTCTC | 1 cut(s) | 623 |
| BsmFI | GGGAC | 1 cut(s) | 1113 |
| BsmI | GAATGC | 1 cut(s) | 1291 |
| BsnI | GGCC | 3 cut(s) | 227, 1145, 1360 |
| Bso31I | GGTCTC | 1 cut(s) | 87 |
| Bsp1286I | GDGCHC | 1 cut(s) | 533 |
| Bsp1407I | TGTACA | 2 cut(s) | 119, 646 |
| Bsp143I | GATC | 5 cut(s) | 32, 678, 827, 1084, 1168 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1046 |
| BspACI | CCGC | 4 cut(s) | 23, 150, 855, 1235 |
| BspANI | GGCC | 3 cut(s) | 227, 1145, 1360 |
| BspCNI | CTCAG | 2 cut(s) | 529, 1126 |
| BspMI | ACCTGC | 1 cut(s) | 1324 |
| BspPI | GGATC | 1 cut(s) | 835 |
| BspTNI | GGTCTC | 1 cut(s) | 87 |
| BsrDI | GCAATG | 1 cut(s) | 316 |
| BsrGI | TGTACA | 2 cut(s) | 119, 646 |
| BssECI | CCNNGG | 2 cut(s) | 78, 519 |
| BssMI | GATC | 5 cut(s) | 32, 678, 827, 1084, 1168 |
| BssT1I | CCWWGG | 2 cut(s) | 78, 519 |
| Bst4CI | ACNGT | 7 cut(s) | 63, 290, 387, 411, 634, 1192, 1327 |
| Bst6I | CTCTTC | 3 cut(s) | 657, 681, 708 |
| BstAUI | TGTACA | 2 cut(s) | 119, 646 |
| BstBAI | YACGTR | 1 cut(s) | 1397 |
| BstC8I | GCNNGC | 1 cut(s) | 702 |
| BstDEI | CTNAG | 6 cut(s) | 238, 488, 537, 1046, 1134, 1291 |
| BstF5I | GGATG | 4 cut(s) | 21, 925, 977, 1045 |
| BstHHI | GCGC | 1 cut(s) | 835 |
| BstKTI | GATC | 5 cut(s) | 35, 681, 830, 1087, 1171 |
| BstMAI | GTCTC | 3 cut(s) | 87, 623, 1270 |
| BstMBI | GATC | 5 cut(s) | 32, 678, 827, 1084, 1168 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1151, 1366 |
| BstNSI | RCATGY | 1 cut(s) | 861 |
| BstSLI | GKGCMC | 1 cut(s) | 533 |
| BstSNI | TACGTA | 1 cut(s) | 1397 |
| BstV1I | GCAGC | 4 cut(s) | 139, 709, 797, 812 |
| BstX2I | RGATCY | 2 cut(s) | 32, 827 |
| BstYI | RGATCY | 2 cut(s) | 32, 827 |
| BsuRI | GGCC | 3 cut(s) | 227, 1145, 1360 |
| BtsCI | GGATG | 4 cut(s) | 21, 925, 977, 1045 |
| BtsIMutI | CAGTG | 2 cut(s) | 286, 1188 |
| BveI | ACCTGC | 1 cut(s) | 1324 |
| Cac8I | GCNNGC | 1 cut(s) | 702 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1268 |
| CfoI | GCGC | 1 cut(s) | 835 |
| Cfr13I | GGNCC | 1 cut(s) | 166 |
| CseI | GACGC | 2 cut(s) | 272, 356 |
| Csp6I | GTAC | 4 cut(s) | 120, 647, 1124, 1394 |
| CviAII | CATG | 7 cut(s) | 542, 824, 858, 1088, 1226, 1339, 1356 |
| CviQI | GTAC | 4 cut(s) | 120, 647, 1124, 1394 |
| DdeI | CTNAG | 6 cut(s) | 238, 488, 537, 1046, 1134, 1291 |
| DpnI | GATC | 5 cut(s) | 34, 680, 829, 1086, 1170 |
| DpnII | GATC | 5 cut(s) | 32, 678, 827, 1084, 1168 |
| DriI | GACNNNNNGTC | 1 cut(s) | 858 |
| EaeI | YGGCCR | 1 cut(s) | 1358 |
| Eam1104I | CTCTTC | 3 cut(s) | 657, 681, 708 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 858 |
| EarI | CTCTTC | 3 cut(s) | 657, 681, 708 |
| Eco105I | TACGTA | 1 cut(s) | 1397 |
| Eco130I | CCWWGG | 2 cut(s) | 78, 519 |
| Eco147I | AGGCCT | 1 cut(s) | 227 |
| Eco31I | GGTCTC | 1 cut(s) | 87 |
| Eco47I | GGWCC | 1 cut(s) | 166 |
| EcoT14I | CCWWGG | 2 cut(s) | 78, 519 |
| ErhI | CCWWGG | 2 cut(s) | 78, 519 |
| Esp3I | CGTCTC | 1 cut(s) | 623 |
| FaeI | CATG | 7 cut(s) | 545, 827, 861, 1091, 1229, 1342, 1359 |
| FaqI | GGGAC | 1 cut(s) | 1113 |
| FatI | CATG | 7 cut(s) | 541, 823, 857, 1087, 1225, 1338, 1355 |
| FbaI | TGATCA | 2 cut(s) | 1084, 1168 |
| Fnu4HI | GCNGC | 4 cut(s) | 153, 698, 786, 801 |
| FokI | GGATG | 4 cut(s) | 28, 932, 984, 1052 |
| Fsp4HI | GCNGC | 4 cut(s) | 153, 698, 786, 801 |
| FspBI | CTAG | 6 cut(s) | 90, 477, 495, 789, 806, 1238 |
| FspI | TGCGCA | 1 cut(s) | 834 |
| GlaI | GCGC | 1 cut(s) | 834 |
| GluI | GCNGC | 4 cut(s) | 153, 698, 786, 801 |
| GsuI | CTGGAG | 1 cut(s) | 780 |
| HaeIII | GGCC | 3 cut(s) | 227, 1145, 1360 |
| HgaI | GACGC | 2 cut(s) | 272, 356 |
| HhaI | GCGC | 1 cut(s) | 835 |
| Hin1II | CATG | 7 cut(s) | 545, 827, 861, 1091, 1229, 1342, 1359 |
| Hin6I | GCGC | 1 cut(s) | 833 |
| HinP1I | GCGC | 1 cut(s) | 833 |
| HincII | GTYRAC | 2 cut(s) | 139, 516 |
| HindII | GTYRAC | 2 cut(s) | 139, 516 |
| HinfI | GANTC | 2 cut(s) | 281, 577 |
| HpaI | GTTAAC | 1 cut(s) | 516 |
| HphI | GGTGA | 3 cut(s) | 67, 1322, 1374 |
| Hpy166II | GTNNAC | 4 cut(s) | 139, 516, 647, 848 |
| Hpy188I | TCNGA | 1 cut(s) | 280 |
| Hpy188III | TCNNGA | 2 cut(s) | 221, 536 |
| Hpy8I | GTNNAC | 4 cut(s) | 139, 516, 647, 848 |
| HpyAV | CCTTC | 5 cut(s) | 457, 607, 991, 1221, 1384 |
| HpyCH4III | ACNGT | 7 cut(s) | 63, 290, 387, 411, 634, 1192, 1327 |
| HpyCH4IV | ACGT | 2 cut(s) | 607, 1396 |
| HpyCH4V | TGCA | 3 cut(s) | 194, 767, 1274 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1151, 1366 |
| HpyF3I | CTNAG | 6 cut(s) | 238, 488, 537, 1046, 1134, 1291 |
| HpySE526I | ACGT | 2 cut(s) | 607, 1396 |
| Hsp92II | CATG | 7 cut(s) | 545, 827, 861, 1091, 1229, 1342, 1359 |
| HspAI | GCGC | 1 cut(s) | 833 |
| Ksp22I | TGATCA | 2 cut(s) | 1084, 1168 |
| KspAI | GTTAAC | 1 cut(s) | 516 |
| Kzo9I | GATC | 5 cut(s) | 32, 678, 827, 1084, 1168 |
| Lsp1109I | GCAGC | 4 cut(s) | 139, 709, 797, 812 |
| LweI | GCATC | 2 cut(s) | 181, 754 |
| MaeI | CTAG | 6 cut(s) | 90, 477, 495, 789, 806, 1238 |
| MaeII | ACGT | 2 cut(s) | 607, 1396 |
| MaeIII | GTNAC | 6 cut(s) | 55, 344, 431, 1058, 1186, 1380 |
| MalI | GATC | 5 cut(s) | 34, 680, 829, 1086, 1170 |
| MboI | GATC | 5 cut(s) | 32, 678, 827, 1084, 1168 |
| MboII | GAAGA | 3 cut(s) | 674, 698, 725 |
| MfeI | CAATTG | 1 cut(s) | 1275 |
| MflI | RGATCY | 2 cut(s) | 32, 827 |
| MhlI | GDGCHC | 1 cut(s) | 533 |
| MmeI | TCCRAC | 3 cut(s) | 887, 1047, 1090 |
| MseI | TTAA | 3 cut(s) | 515, 641, 908 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1193 |
| MspA1I | CMGCKG | 1 cut(s) | 152 |
| MunI | CAATTG | 1 cut(s) | 1275 |
| Mva1269I | GAATGC | 1 cut(s) | 1291 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1151, 1366 |
| NdeII | GATC | 5 cut(s) | 32, 678, 827, 1084, 1168 |
| NlaIII | CATG | 7 cut(s) | 545, 827, 861, 1091, 1229, 1342, 1359 |
| NmuCI | GTSAC | 6 cut(s) | 55, 344, 431, 1058, 1186, 1380 |
| NsbI | TGCGCA | 1 cut(s) | 834 |
| NspI | RCATGY | 1 cut(s) | 861 |
| OliI | CACNNNNGTG | 1 cut(s) | 1193 |
| PceI | AGGCCT | 1 cut(s) | 227 |
| PctI | GAATGC | 1 cut(s) | 1291 |
| PfeI | GAWTC | 2 cut(s) | 281, 577 |
| PkrI | GCNGC | 4 cut(s) | 154, 699, 787, 802 |
| Ppu21I | YACGTR | 1 cut(s) | 1397 |
| PsiI | TTATAA | 1 cut(s) | 452 |
| PspPI | GGNCC | 1 cut(s) | 166 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1268 |
| PsuI | RGATCY | 2 cut(s) | 32, 827 |
| RsaI | GTAC | 4 cut(s) | 121, 648, 1125, 1395 |
| RsaNI | GTAC | 4 cut(s) | 120, 647, 1124, 1394 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1193 |
| SaqAI | TTAA | 3 cut(s) | 515, 641, 908 |
| SatI | GCNGC | 4 cut(s) | 153, 698, 786, 801 |
| Sau3AI | GATC | 5 cut(s) | 32, 678, 827, 1084, 1168 |
| Sau96I | GGNCC | 1 cut(s) | 166 |
| SduI | GDGCHC | 1 cut(s) | 533 |
| SfaNI | GCATC | 2 cut(s) | 181, 754 |
| SinI | GGWCC | 1 cut(s) | 166 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1193 |
| SnaBI | TACGTA | 1 cut(s) | 1397 |
| SpeI | ACTAGT | 1 cut(s) | 494 |
| SseBI | AGGCCT | 1 cut(s) | 227 |
| SsiI | CCGC | 4 cut(s) | 23, 150, 855, 1235 |
| SspI | AATATT | 1 cut(s) | 657 |
| SspMI | CTAG | 6 cut(s) | 90, 477, 495, 789, 806, 1238 |
| StuI | AGGCCT | 1 cut(s) | 227 |
| StyI | CCWWGG | 2 cut(s) | 78, 519 |
| TaaI | ACNGT | 7 cut(s) | 63, 290, 387, 411, 634, 1192, 1327 |
| TaiI | ACGT | 2 cut(s) | 610, 1399 |
| TaqI | TCGA | 1 cut(s) | 880 |
| TatI | WGTACW | 2 cut(s) | 119, 646 |
| TfiI | GAWTC | 2 cut(s) | 281, 577 |
| Tru1I | TTAA | 3 cut(s) | 515, 641, 908 |
| Tru9I | TTAA | 3 cut(s) | 515, 641, 908 |
| TscAI | CASTG | 2 cut(s) | 293, 1195 |
| TseFI | GTSAC | 6 cut(s) | 55, 344, 431, 1058, 1186, 1380 |
| TseI | GCWGC | 4 cut(s) | 152, 697, 785, 800 |
| Tsp45I | GTSAC | 6 cut(s) | 55, 344, 431, 1058, 1186, 1380 |
| TspDTI | ATGAA | 6 cut(s) | 228, 342, 888, 915, 923, 1329 |
| TspRI | CASTG | 2 cut(s) | 293, 1195 |
| VpaK11BI | GGWCC | 1 cut(s) | 166 |
| XapI | RAATTY | 2 cut(s) | 71, 722 |
| XceI | RCATGY | 1 cut(s) | 861 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1223 |
| XspI | CTAG | 6 cut(s) | 90, 477, 495, 789, 806, 1238 |