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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 415 |
| AciI | CCGC | 1 cut(s) | 347 |
| AcoI | YGGCCR | 1 cut(s) | 931 |
| AcsI | RAATTY | 3 cut(s) | 374, 434, 505 |
| AcuI | CTGAAG | 2 cut(s) | 135, 940 |
| AfaI | GTAC | 1 cut(s) | 6 |
| AgsI | TTSAA | 6 cut(s) | 304, 329, 545, 635, 821, 1045 |
| AhlI | ACTAGT | 1 cut(s) | 908 |
| AjnI | CCWGG | 1 cut(s) | 1165 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 117, 149 |
| AleI | CACNNNNGTG | 2 cut(s) | 1095, 1105 |
| Alw21I | GWGCWC | 2 cut(s) | 1102, 1132 |
| Alw26I | GTCTC | 1 cut(s) | 329 |
| Alw44I | GTGCAC | 1 cut(s) | 1098 |
| AoxI | GGCC | 4 cut(s) | 558, 710, 870, 931 |
| ApaLI | GTGCAC | 1 cut(s) | 1098 |
| ApeKI | GCWGC | 4 cut(s) | 35, 311, 369, 1002 |
| ApoI | RAATTY | 3 cut(s) | 374, 434, 505 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 447 |
| AspS9I | GGNCC | 2 cut(s) | 468, 870 |
| AsuHPI | GGTGA | 4 cut(s) | 103, 272, 610, 889 |
| AvaII | GGWCC | 1 cut(s) | 468 |
| BaeGI | GKGCMC | 1 cut(s) | 1102 |
| BanII | GRGCYC | 1 cut(s) | 1132 |
| BbsI | GAAGAC | 1 cut(s) | 84 |
| Bbv12I | GWGCWC | 2 cut(s) | 1102, 1132 |
| BbvI | GCAGC | 4 cut(s) | 22, 298, 381, 1014 |
| BccI | CCATC | 5 cut(s) | 11, 160, 884, 908, 942 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 489, 523 |
| BciT130I | CCWGG | 1 cut(s) | 1167 |
| BclI | TGATCA | 1 cut(s) | 799 |
| BcoDI | GTCTC | 1 cut(s) | 329 |
| BcuI | ACTAGT | 1 cut(s) | 908 |
| BfaI | CTAG | 5 cut(s) | 276, 497, 909, 1139, 1171 |
| BisI | GCNGC | 5 cut(s) | 36, 312, 347, 370, 1003 |
| BlsI | GCNGC | 5 cut(s) | 37, 313, 348, 371, 1004 |
| Bme1390I | CCNGG | 1 cut(s) | 1167 |
| Bme18I | GGWCC | 1 cut(s) | 468 |
| BmgT120I | GGNCC | 2 cut(s) | 468, 870 |
| BmiI | GGNNCC | 1 cut(s) | 535 |
| BmrFI | CCNGG | 1 cut(s) | 1167 |
| BmsI | GCATC | 5 cut(s) | 298, 389, 628, 676, 1047 |
| BpiI | GAAGAC | 1 cut(s) | 84 |
| Bpu10I | CCTNAGC | 1 cut(s) | 183 |
| BpuEI | CTTGAG | 1 cut(s) | 106 |
| Bsa29I | ATCGAT | 1 cut(s) | 383 |
| BsaBI | GATNNNNATC | 2 cut(s) | 801, 804 |
| BsaJI | CCNNGG | 1 cut(s) | 577 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 194, 224 |
| Bse1I | ACTGG | 1 cut(s) | 1099 |
| Bse3DI | GCAATG | 2 cut(s) | 145, 177 |
| Bse8I | GATNNNNATC | 2 cut(s) | 801, 804 |
| BseBI | CCWGG | 1 cut(s) | 1167 |
| BseCI | ATCGAT | 1 cut(s) | 383 |
| BseDI | CCNNGG | 1 cut(s) | 577 |
| BseGI | GGATG | 5 cut(s) | 328, 400, 895, 900, 934 |
| BseJI | GATNNNNATC | 2 cut(s) | 801, 804 |
| BseMI | GCAATG | 2 cut(s) | 145, 177 |
| BseMII | CTCAG | 1 cut(s) | 258 |
| BseNI | ACTGG | 1 cut(s) | 1099 |
| BseRI | GAGGAG | 1 cut(s) | 347 |
| BseSI | GKGCMC | 1 cut(s) | 1102 |
| BseXI | GCAGC | 4 cut(s) | 22, 298, 381, 1014 |
| BsgI | GTGCAG | 1 cut(s) | 297 |
| BshFI | GGCC | 4 cut(s) | 560, 712, 872, 933 |
| BshVI | ATCGAT | 1 cut(s) | 383 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1102, 1132 |
| BsmAI | GTCTC | 1 cut(s) | 329 |
| BsnI | GGCC | 4 cut(s) | 560, 712, 872, 933 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1102, 1132 |
| Bsp143I | GATC | 2 cut(s) | 799, 1068 |
| BspACI | CCGC | 1 cut(s) | 347 |
| BspANI | GGCC | 4 cut(s) | 560, 712, 872, 933 |
| BspCNI | CTCAG | 1 cut(s) | 259 |
| BspDI | ATCGAT | 1 cut(s) | 383 |
| BspHI | TCATGA | 1 cut(s) | 808 |
| BspLI | GGNNCC | 1 cut(s) | 535 |
| BspQI | GCTCTTC | 2 cut(s) | 750, 915 |
| BsrDI | GCAATG | 2 cut(s) | 145, 177 |
| BsrI | ACTGG | 1 cut(s) | 1099 |
| BssECI | CCNNGG | 1 cut(s) | 577 |
| BssMI | GATC | 2 cut(s) | 799, 1068 |
| BssT1I | CCWWGG | 1 cut(s) | 577 |
| Bst2UI | CCWGG | 1 cut(s) | 1167 |
| Bst4CI | ACNGT | 3 cut(s) | 283, 478, 739 |
| Bst6I | CTCTTC | 6 cut(s) | 95, 111, 324, 750, 770, 915 |
| BstC8I | GCNNGC | 1 cut(s) | 562 |
| BstDEI | CTNAG | 2 cut(s) | 183, 267 |
| BstEII | GGTNACC | 1 cut(s) | 895 |
| BstF5I | GGATG | 5 cut(s) | 328, 400, 895, 900, 934 |
| BstKTI | GATC | 2 cut(s) | 802, 1071 |
| BstMAI | GTCTC | 1 cut(s) | 329 |
| BstMBI | GATC | 2 cut(s) | 799, 1068 |
| BstNI | CCWGG | 1 cut(s) | 1167 |
| BstPI | GGTNACC | 1 cut(s) | 895 |
| BstSCI | CCNGG | 1 cut(s) | 1165 |
| BstSLI | GKGCMC | 1 cut(s) | 1102 |
| BstV1I | GCAGC | 4 cut(s) | 22, 298, 381, 1014 |
| BstV2I | GAAGAC | 1 cut(s) | 84 |
| Bsu15I | ATCGAT | 1 cut(s) | 383 |
| BsuRI | GGCC | 4 cut(s) | 560, 712, 872, 933 |
| BsuTUI | ATCGAT | 1 cut(s) | 383 |
| BtgZI | GCGATG | 1 cut(s) | 699 |
| BtsCI | GGATG | 5 cut(s) | 328, 400, 895, 900, 934 |
| BtsIMutI | CAGTG | 1 cut(s) | 1092 |
| Cac8I | GCNNGC | 1 cut(s) | 562 |
| CciI | TCATGA | 1 cut(s) | 808 |
| Cfr13I | GGNCC | 2 cut(s) | 468, 870 |
| ClaI | ATCGAT | 1 cut(s) | 383 |
| Csp6I | GTAC | 1 cut(s) | 5 |
| CviAII | CATG | 4 cut(s) | 461, 809, 976, 985 |
| CviQI | GTAC | 1 cut(s) | 5 |
| DdeI | CTNAG | 2 cut(s) | 183, 267 |
| DpnI | GATC | 2 cut(s) | 801, 1070 |
| DpnII | GATC | 2 cut(s) | 799, 1068 |
| EaeI | YGGCCR | 1 cut(s) | 931 |
| Eam1104I | CTCTTC | 6 cut(s) | 95, 111, 324, 750, 770, 915 |
| EarI | CTCTTC | 6 cut(s) | 95, 111, 324, 750, 770, 915 |
| Ecl136II | GAGCTC | 1 cut(s) | 1130 |
| Eco130I | CCWWGG | 1 cut(s) | 577 |
| Eco24I | GRGCYC | 1 cut(s) | 1132 |
| Eco32I | GATATC | 1 cut(s) | 996 |
| Eco47I | GGWCC | 1 cut(s) | 468 |
| Eco53kI | GAGCTC | 1 cut(s) | 1130 |
| Eco57I | CTGAAG | 2 cut(s) | 135, 940 |
| Eco91I | GGTNACC | 1 cut(s) | 895 |
| EcoICRI | GAGCTC | 1 cut(s) | 1130 |
| EcoO65I | GGTNACC | 1 cut(s) | 895 |
| EcoRII | CCWGG | 1 cut(s) | 1165 |
| EcoRV | GATATC | 1 cut(s) | 996 |
| EcoT14I | CCWWGG | 1 cut(s) | 577 |
| EcoT38I | GRGCYC | 1 cut(s) | 1132 |
| ErhI | CCWWGG | 1 cut(s) | 577 |
| FaeI | CATG | 4 cut(s) | 464, 812, 979, 988 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 181, 213, 284, 316 |
| FatI | CATG | 4 cut(s) | 460, 808, 975, 984 |
| FauNDI | CATATG | 1 cut(s) | 700 |
| FbaI | TGATCA | 1 cut(s) | 799 |
| FblI | GTMKAC | 1 cut(s) | 415 |
| Fnu4HI | GCNGC | 5 cut(s) | 36, 312, 347, 370, 1003 |
| FokI | GGATG | 5 cut(s) | 335, 407, 887, 902, 921 |
| FriOI | GRGCYC | 1 cut(s) | 1132 |
| Fsp4HI | GCNGC | 5 cut(s) | 36, 312, 347, 370, 1003 |
| FspBI | CTAG | 5 cut(s) | 276, 497, 909, 1139, 1171 |
| GluI | GCNGC | 5 cut(s) | 36, 312, 347, 370, 1003 |
| HaeIII | GGCC | 4 cut(s) | 560, 712, 872, 933 |
| Hin1II | CATG | 4 cut(s) | 464, 812, 979, 988 |
| HinfI | GANTC | 1 cut(s) | 488 |
| HphI | GGTGA | 4 cut(s) | 103, 272, 610, 889 |
| Hpy166II | GTNNAC | 2 cut(s) | 416, 1100 |
| Hpy188I | TCNGA | 1 cut(s) | 453 |
| Hpy188III | TCNNGA | 6 cut(s) | 276, 286, 301, 353, 809, 958 |
| Hpy8I | GTNNAC | 2 cut(s) | 416, 1100 |
| HpyAV | CCTTC | 2 cut(s) | 937, 982 |
| HpyCH4III | ACNGT | 3 cut(s) | 283, 478, 739 |
| HpyCH4V | TGCA | 4 cut(s) | 163, 314, 380, 1100 |
| HpyF3I | CTNAG | 2 cut(s) | 183, 267 |
| Hsp92II | CATG | 4 cut(s) | 464, 812, 979, 988 |
| Ksp22I | TGATCA | 1 cut(s) | 799 |
| Kzo9I | GATC | 2 cut(s) | 799, 1068 |
| LguI | GCTCTTC | 2 cut(s) | 750, 915 |
| LpnPI | CCDG | 9 cut(s) | 338, 574, 843, 943, 1022, 1046, 1080, 1098, 1152 |
| Lsp1109I | GCAGC | 4 cut(s) | 22, 298, 381, 1014 |
| LweI | GCATC | 5 cut(s) | 298, 389, 628, 676, 1047 |
| MaeI | CTAG | 5 cut(s) | 276, 497, 909, 1139, 1171 |
| MaeIII | GTNAC | 2 cut(s) | 616, 895 |
| MalI | GATC | 2 cut(s) | 801, 1070 |
| MboI | GATC | 2 cut(s) | 799, 1068 |
| MhlI | GDGCHC | 2 cut(s) | 1102, 1132 |
| MluCI | AATT | 5 cut(s) | 362, 374, 434, 505, 765 |
| MlyI | GAGTC | 1 cut(s) | 497 |
| MmeI | TCCRAC | 3 cut(s) | 201, 465, 492 |
| MroXI | GAANNNNTTC | 1 cut(s) | 447 |
| MseI | TTAA | 5 cut(s) | 45, 213, 296, 426, 884 |
| MslI | CAYNNNNRTG | 4 cut(s) | 807, 810, 1095, 1105 |
| MspR9I | CCNGG | 1 cut(s) | 1167 |
| MvaI | CCWGG | 1 cut(s) | 1167 |
| NdeI | CATATG | 1 cut(s) | 700 |
| NdeII | GATC | 2 cut(s) | 799, 1068 |
| NlaIII | CATG | 4 cut(s) | 464, 812, 979, 988 |
| NlaIV | GGNNCC | 1 cut(s) | 535 |
| NmuCI | GTSAC | 2 cut(s) | 616, 895 |
| OliI | CACNNNNGTG | 2 cut(s) | 1095, 1105 |
| PagI | TCATGA | 1 cut(s) | 808 |
| PciSI | GCTCTTC | 2 cut(s) | 750, 915 |
| PdmI | GAANNNNTTC | 1 cut(s) | 447 |
| PkrI | GCNGC | 5 cut(s) | 37, 313, 348, 371, 1004 |
| PleI | GAGTC | 1 cut(s) | 496 |
| PpsI | GAGTC | 1 cut(s) | 496 |
| Psp124BI | GAGCTC | 1 cut(s) | 1132 |
| Psp6I | CCWGG | 1 cut(s) | 1165 |
| PspEI | GGTNACC | 1 cut(s) | 895 |
| PspGI | CCWGG | 1 cut(s) | 1165 |
| PspN4I | GGNNCC | 1 cut(s) | 535 |
| PspPI | GGNCC | 2 cut(s) | 468, 870 |
| RsaI | GTAC | 1 cut(s) | 6 |
| RsaNI | GTAC | 1 cut(s) | 5 |
| RseI | CAYNNNNRTG | 4 cut(s) | 807, 810, 1095, 1105 |
| SacI | GAGCTC | 1 cut(s) | 1132 |
| SapI | GCTCTTC | 2 cut(s) | 750, 915 |
| SaqAI | TTAA | 5 cut(s) | 45, 213, 296, 426, 884 |
| SatI | GCNGC | 5 cut(s) | 36, 312, 347, 370, 1003 |
| Sau3AI | GATC | 2 cut(s) | 799, 1068 |
| Sau96I | GGNCC | 2 cut(s) | 468, 870 |
| SchI | GAGTC | 1 cut(s) | 497 |
| ScrFI | CCNGG | 1 cut(s) | 1167 |
| SduI | GDGCHC | 2 cut(s) | 1102, 1132 |
| SfaNI | GCATC | 5 cut(s) | 298, 389, 628, 676, 1047 |
| SinI | GGWCC | 1 cut(s) | 468 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 807, 810, 1095, 1105 |
| SmlI | CTYRAG | 1 cut(s) | 85 |
| SmoI | CTYRAG | 1 cut(s) | 85 |
| SpeI | ACTAGT | 1 cut(s) | 908 |
| Sse9I | AATT | 5 cut(s) | 362, 374, 434, 505, 765 |
| SsiI | CCGC | 1 cut(s) | 347 |
| SspMI | CTAG | 5 cut(s) | 276, 497, 909, 1139, 1171 |
| SstI | GAGCTC | 1 cut(s) | 1132 |
| StyD4I | CCNGG | 1 cut(s) | 1165 |
| StyI | CCWWGG | 1 cut(s) | 577 |
| TaaI | ACNGT | 3 cut(s) | 283, 478, 739 |
| TaqI | TCGA | 2 cut(s) | 383, 998 |
| TasI | AATT | 5 cut(s) | 362, 374, 434, 505, 765 |
| TauI | GCSGC | 1 cut(s) | 349 |
| Tru1I | TTAA | 5 cut(s) | 45, 213, 296, 426, 884 |
| Tru9I | TTAA | 5 cut(s) | 45, 213, 296, 426, 884 |
| TscAI | CASTG | 1 cut(s) | 1099 |
| TseFI | GTSAC | 2 cut(s) | 616, 895 |
| TseI | GCWGC | 4 cut(s) | 35, 311, 369, 1002 |
| Tsp45I | GTSAC | 2 cut(s) | 616, 895 |
| TspDTI | ATGAA | 3 cut(s) | 156, 1001, 1066 |
| TspRI | CASTG | 1 cut(s) | 1099 |
| VneI | GTGCAC | 1 cut(s) | 1098 |
| VpaK11BI | GGWCC | 1 cut(s) | 468 |
| XapI | RAATTY | 3 cut(s) | 374, 434, 505 |
| XbaI | TCTAGA | 1 cut(s) | 275 |
| XmiI | GTMKAC | 1 cut(s) | 415 |
| XmnI | GAANNNNTTC | 1 cut(s) | 447 |
| XspI | CTAG | 5 cut(s) | 276, 497, 909, 1139, 1171 |