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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 112 |
| AciI | CCGC | 3 cut(s) | 36, 133, 356 |
| AcoI | YGGCCR | 2 cut(s) | 357, 427 |
| AcuI | CTGAAG | 1 cut(s) | 93 |
| AfeI | AGCGCT | 1 cut(s) | 70 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 119 |
| AflIII | ACRYGT | 1 cut(s) | 418 |
| AgsI | TTSAA | 2 cut(s) | 13, 377 |
| AluBI | AGCT | 3 cut(s) | 206, 347, 438 |
| AluI | AGCT | 3 cut(s) | 206, 347, 438 |
| Aor13HI | TCCGGA | 1 cut(s) | 112 |
| Aor51HI | AGCGCT | 1 cut(s) | 70 |
| AoxI | GGCC | 2 cut(s) | 357, 427 |
| ApeKI | GCWGC | 2 cut(s) | 401, 438 |
| AspLEI | GCGC | 1 cut(s) | 71 |
| AspS9I | GGNCC | 1 cut(s) | 481 |
| AsuHPI | GGTGA | 2 cut(s) | 404, 463 |
| AvaII | GGWCC | 1 cut(s) | 481 |
| BalI | TGGCCA | 1 cut(s) | 429 |
| BbvI | GCAGC | 2 cut(s) | 388, 425 |
| BfaI | CTAG | 1 cut(s) | 284 |
| BfoI | RGCGCY | 1 cut(s) | 72 |
| BisI | GCNGC | 3 cut(s) | 357, 402, 439 |
| BlsI | GCNGC | 3 cut(s) | 358, 403, 440 |
| Bme18I | GGWCC | 1 cut(s) | 481 |
| BmgT120I | GGNCC | 1 cut(s) | 481 |
| BsaJI | CCNNGG | 1 cut(s) | 430 |
| BsaWI | WCCGGW | 1 cut(s) | 112 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 135, 165 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 119 |
| BseAI | TCCGGA | 1 cut(s) | 112 |
| BseDI | CCNNGG | 1 cut(s) | 430 |
| BseGI | GGATG | 1 cut(s) | 22 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BseRI | GAGGAG | 5 cut(s) | 35, 257, 278, 302, 314 |
| BseXI | GCAGC | 2 cut(s) | 388, 425 |
| BsgI | GTGCAG | 1 cut(s) | 245 |
| BshFI | GGCC | 2 cut(s) | 359, 429 |
| BsiSI | CCGG | 1 cut(s) | 113 |
| BslFI | GGGAC | 1 cut(s) | 121 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BsmFI | GGGAC | 1 cut(s) | 121 |
| BsnI | GGCC | 2 cut(s) | 359, 429 |
| Bsp13I | TCCGGA | 1 cut(s) | 112 |
| Bsp19I | CCATGG | 1 cut(s) | 430 |
| BspACI | CCGC | 3 cut(s) | 36, 133, 356 |
| BspANI | GGCC | 2 cut(s) | 359, 429 |
| BspEI | TCCGGA | 1 cut(s) | 112 |
| BssECI | CCNNGG | 1 cut(s) | 430 |
| BssT1I | CCWWGG | 1 cut(s) | 430 |
| Bst4CI | ACNGT | 2 cut(s) | 211, 451 |
| Bst6I | CTCTTC | 1 cut(s) | 121 |
| BstC8I | GCNNGC | 1 cut(s) | 345 |
| BstDEI | CTNAG | 2 cut(s) | 65, 218 |
| BstDSI | CCRYGG | 1 cut(s) | 430 |
| BstF5I | GGATG | 1 cut(s) | 22 |
| BstH2I | RGCGCY | 1 cut(s) | 72 |
| BstHHI | GCGC | 1 cut(s) | 71 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 35, 353, 365, 435 |
| BstNSI | RCATGY | 1 cut(s) | 422 |
| BstV1I | GCAGC | 2 cut(s) | 388, 425 |
| BsuRI | GGCC | 2 cut(s) | 359, 429 |
| BtgI | CCRYGG | 1 cut(s) | 430 |
| BtsCI | GGATG | 1 cut(s) | 22 |
| Cac8I | GCNNGC | 1 cut(s) | 345 |
| CfoI | GCGC | 1 cut(s) | 71 |
| Cfr13I | GGNCC | 1 cut(s) | 481 |
| CviAII | CATG | 3 cut(s) | 119, 419, 431 |
| CviJI | RGCY | 6 cut(s) | 206, 347, 359, 401, 429, 438 |
| CviKI_1 | RGCY | 6 cut(s) | 206, 347, 359, 401, 429, 438 |
| DdeI | CTNAG | 2 cut(s) | 65, 218 |
| EaeI | YGGCCR | 2 cut(s) | 357, 427 |
| Eam1104I | CTCTTC | 1 cut(s) | 121 |
| EarI | CTCTTC | 1 cut(s) | 121 |
| Eco130I | CCWWGG | 1 cut(s) | 430 |
| Eco47I | GGWCC | 1 cut(s) | 481 |
| Eco47III | AGCGCT | 1 cut(s) | 70 |
| Eco57I | CTGAAG | 1 cut(s) | 93 |
| EcoT14I | CCWWGG | 1 cut(s) | 430 |
| ErhI | CCWWGG | 1 cut(s) | 430 |
| FaeI | CATG | 3 cut(s) | 122, 422, 434 |
| FaiI | YATR | 5 cut(s) | 120, 200, 350, 420, 432 |
| FaqI | GGGAC | 1 cut(s) | 121 |
| FatI | CATG | 3 cut(s) | 118, 418, 430 |
| FauI | CCCGC | 1 cut(s) | 126 |
| Fnu4HI | GCNGC | 3 cut(s) | 357, 402, 439 |
| FokI | GGATG | 1 cut(s) | 29 |
| Fsp4HI | GCNGC | 3 cut(s) | 357, 402, 439 |
| FspBI | CTAG | 1 cut(s) | 284 |
| GlaI | GCGC | 1 cut(s) | 70 |
| GluI | GCNGC | 3 cut(s) | 357, 402, 439 |
| HaeII | RGCGCY | 1 cut(s) | 72 |
| HaeIII | GGCC | 2 cut(s) | 359, 429 |
| HapII | CCGG | 1 cut(s) | 113 |
| HhaI | GCGC | 1 cut(s) | 71 |
| Hin1II | CATG | 3 cut(s) | 122, 422, 434 |
| Hin6I | GCGC | 1 cut(s) | 69 |
| HinP1I | GCGC | 1 cut(s) | 69 |
| HinfI | GANTC | 2 cut(s) | 23, 109 |
| HpaII | CCGG | 1 cut(s) | 113 |
| HphI | GGTGA | 2 cut(s) | 404, 463 |
| Hpy188I | TCNGA | 1 cut(s) | 215 |
| Hpy188III | TCNNGA | 1 cut(s) | 113 |
| Hpy99I | CGWCG | 1 cut(s) | 215 |
| HpyAV | CCTTC | 1 cut(s) | 68 |
| HpyCH4III | ACNGT | 2 cut(s) | 211, 451 |
| HpyCH4IV | ACGT | 1 cut(s) | 184 |
| HpyCH4V | TGCA | 3 cut(s) | 226, 335, 404 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 35, 353, 365, 435 |
| HpyF3I | CTNAG | 2 cut(s) | 65, 218 |
| HpySE526I | ACGT | 1 cut(s) | 184 |
| Hsp92II | CATG | 3 cut(s) | 122, 422, 434 |
| HspAI | GCGC | 1 cut(s) | 69 |
| Kpn2I | TCCGGA | 1 cut(s) | 112 |
| LmnI | GCTCC | 1 cut(s) | 115 |
| LpnPI | CCDG | 2 cut(s) | 126, 411 |
| Lsp1109I | GCAGC | 2 cut(s) | 388, 425 |
| MaeI | CTAG | 1 cut(s) | 284 |
| MaeII | ACGT | 1 cut(s) | 184 |
| MaeIII | GTNAC | 1 cut(s) | 151 |
| MboII | GAAGA | 3 cut(s) | 138, 265, 289 |
| MlsI | TGGCCA | 1 cut(s) | 429 |
| MluCI | AATT | 1 cut(s) | 327 |
| MluNI | TGGCCA | 1 cut(s) | 429 |
| MlyI | GAGTC | 2 cut(s) | 32, 103 |
| MmeI | TCCRAC | 2 cut(s) | 193, 467 |
| Mox20I | TGGCCA | 1 cut(s) | 429 |
| MroI | TCCGGA | 1 cut(s) | 112 |
| MscI | TGGCCA | 1 cut(s) | 429 |
| MseI | TTAA | 1 cut(s) | 92 |
| MslI | CAYNNNNRTG | 1 cut(s) | 417 |
| Msp20I | TGGCCA | 1 cut(s) | 429 |
| MspI | CCGG | 1 cut(s) | 113 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 35, 353, 365, 435 |
| NcoI | CCATGG | 1 cut(s) | 430 |
| NlaIII | CATG | 3 cut(s) | 122, 422, 434 |
| NmuCI | GTSAC | 1 cut(s) | 151 |
| NspI | RCATGY | 1 cut(s) | 422 |
| PciI | ACATGT | 1 cut(s) | 418 |
| PkrI | GCNGC | 3 cut(s) | 358, 403, 440 |
| PleI | GAGTC | 2 cut(s) | 31, 103 |
| PpsI | GAGTC | 2 cut(s) | 31, 103 |
| PscI | ACATGT | 1 cut(s) | 418 |
| PspPI | GGNCC | 1 cut(s) | 481 |
| RseI | CAYNNNNRTG | 1 cut(s) | 417 |
| SaqAI | TTAA | 1 cut(s) | 92 |
| SatI | GCNGC | 3 cut(s) | 357, 402, 439 |
| Sau96I | GGNCC | 1 cut(s) | 481 |
| SchI | GAGTC | 2 cut(s) | 32, 103 |
| SetI | ASST | 7 cut(s) | 148, 177, 187, 208, 349, 440, 483 |
| SinI | GGWCC | 1 cut(s) | 481 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 417 |
| Sse9I | AATT | 1 cut(s) | 327 |
| SsiI | CCGC | 3 cut(s) | 36, 133, 356 |
| SspI | AATATT | 1 cut(s) | 234 |
| SspMI | CTAG | 1 cut(s) | 284 |
| StyI | CCWWGG | 1 cut(s) | 430 |
| TaaI | ACNGT | 2 cut(s) | 211, 451 |
| TaiI | ACGT | 1 cut(s) | 187 |
| TasI | AATT | 1 cut(s) | 327 |
| TauI | GCSGC | 1 cut(s) | 359 |
| Tru1I | TTAA | 1 cut(s) | 92 |
| Tru9I | TTAA | 1 cut(s) | 92 |
| TseFI | GTSAC | 1 cut(s) | 151 |
| TseI | GCWGC | 2 cut(s) | 401, 438 |
| Tsp45I | GTSAC | 1 cut(s) | 151 |
| TspGWI | ACGGA | 2 cut(s) | 473, 487 |
| VpaK11BI | GGWCC | 1 cut(s) | 481 |
| XceI | RCATGY | 1 cut(s) | 422 |
| XspI | CTAG | 1 cut(s) | 284 |