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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 306 |
| AccB1I | GGYRCC | 1 cut(s) | 1048 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 81 |
| AccII | CGCG | 2 cut(s) | 7, 912 |
| AccIII | TCCGGA | 2 cut(s) | 595, 1702 |
| AciI | CCGC | 4 cut(s) | 782, 1209, 1238, 1850 |
| AclWI | GGATC | 5 cut(s) | 190, 530, 1568, 1581, 1837 |
| AcoI | YGGCCR | 3 cut(s) | 1013, 1249, 1296 |
| AcsI | RAATTY | 2 cut(s) | 150, 1810 |
| AcvI | CACGTG | 1 cut(s) | 1185 |
| AcyI | GRCGYC | 1 cut(s) | 990 |
| AdeI | CACNNNGTG | 1 cut(s) | 81 |
| AfaI | GTAC | 4 cut(s) | 255, 1000, 1326, 1417 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 58, 81, 545, 1443 |
| AhlI | ACTAGT | 1 cut(s) | 1327 |
| AjnI | CCWGG | 5 cut(s) | 244, 538, 1010, 1023, 1036 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 341, 373, 611, 643 |
| AleI | CACNNNNGTG | 1 cut(s) | 1423 |
| AluBI | AGCT | 7 cut(s) | 284, 398, 473, 607, 650, 874, 1344 |
| AluI | AGCT | 7 cut(s) | 284, 398, 473, 607, 650, 874, 1344 |
| Alw21I | GWGCWC | 5 cut(s) | 216, 609, 1184, 1522, 1566 |
| Alw26I | GTCTC | 6 cut(s) | 131, 226, 323, 723, 764, 919 |
| Alw44I | GTGCAC | 2 cut(s) | 1180, 1562 |
| AlwI | GGATC | 5 cut(s) | 190, 530, 1568, 1581, 1837 |
| Aor13HI | TCCGGA | 2 cut(s) | 595, 1702 |
| AoxI | GGCC | 3 cut(s) | 1013, 1249, 1296 |
| ApaLI | GTGCAC | 2 cut(s) | 1180, 1562 |
| ApeKI | GCWGC | 5 cut(s) | 406, 473, 647, 779, 1235 |
| ApoI | RAATTY | 2 cut(s) | 150, 1810 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 378, 1196 |
| AspLEI | GCGC | 2 cut(s) | 7, 912 |
| AspS9I | GGNCC | 1 cut(s) | 1240 |
| AsuHPI | GGTGA | 4 cut(s) | 97, 501, 614, 1207 |
| AvaII | GGWCC | 1 cut(s) | 1240 |
| BaeGI | GKGCMC | 2 cut(s) | 1184, 1566 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 990, 1023 |
| BalI | TGGCCA | 2 cut(s) | 1015, 1298 |
| BamHI | GGATCC | 1 cut(s) | 1573 |
| BanI | GGYRCC | 1 cut(s) | 1048 |
| BanII | GRGCYC | 1 cut(s) | 609 |
| BbrPI | CACGTG | 1 cut(s) | 1185 |
| BbsI | GAAGAC | 1 cut(s) | 1137 |
| Bbv12I | GWGCWC | 5 cut(s) | 216, 609, 1184, 1522, 1566 |
| BbvCI | CCTCAGC | 1 cut(s) | 432 |
| BbvI | GCAGC | 5 cut(s) | 418, 460, 659, 766, 1222 |
| BccI | CCATC | 3 cut(s) | 173, 1226, 1369 |
| BceAI | ACGGC | 3 cut(s) | 110, 720, 1236 |
| BciT130I | CCWGG | 5 cut(s) | 246, 540, 1012, 1025, 1038 |
| BciVI | GTATCC | 1 cut(s) | 8 |
| BclI | TGATCA | 1 cut(s) | 1405 |
| BcoDI | GTCTC | 6 cut(s) | 131, 226, 323, 723, 764, 919 |
| BcuI | ACTAGT | 1 cut(s) | 1327 |
| BfaI | CTAG | 2 cut(s) | 1307, 1328 |
| BfmI | CTRYAG | 1 cut(s) | 1468 |
| BfuAI | ACCTGC | 1 cut(s) | 306 |
| BfuI | GTATCC | 1 cut(s) | 8 |
| BglII | AGATCT | 1 cut(s) | 763 |
| BisI | GCNGC | 5 cut(s) | 407, 474, 648, 780, 1236 |
| BlpI | GCTNAGC | 1 cut(s) | 1860 |
| BlsI | GCNGC | 5 cut(s) | 408, 475, 649, 781, 1237 |
| Bme1390I | CCNGG | 5 cut(s) | 246, 540, 1012, 1025, 1038 |
| Bme18I | GGWCC | 1 cut(s) | 1240 |
| BmgT120I | GGNCC | 1 cut(s) | 1240 |
| BmiI | GGNNCC | 5 cut(s) | 692, 741, 1050, 1503, 1575 |
| BmrFI | CCNGG | 5 cut(s) | 246, 540, 1012, 1025, 1038 |
| BmrI | ACTGGG | 1 cut(s) | 1608 |
| BmsI | GCATC | 4 cut(s) | 250, 634, 869, 931 |
| BmuI | ACTGGG | 1 cut(s) | 1608 |
| BpiI | GAAGAC | 1 cut(s) | 1137 |
| BpmI | CTGGAG | 2 cut(s) | 788, 1059 |
| Bpu10I | CCTNAGC | 2 cut(s) | 237, 432 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1860 |
| Bsa29I | ATCGAT | 1 cut(s) | 185 |
| BsaAI | YACGTR | 1 cut(s) | 1185 |
| BsaHI | GRCGYC | 1 cut(s) | 990 |
| BsaI | GGTCTC | 1 cut(s) | 226 |
| BsaJI | CCNNGG | 2 cut(s) | 1036, 1293 |
| BsaWI | WCCGGW | 2 cut(s) | 595, 1702 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 58, 81, 545, 1443 |
| Bse1I | ACTGG | 4 cut(s) | 804, 959, 1417, 1603 |
| BseAI | TCCGGA | 2 cut(s) | 595, 1702 |
| BseBI | CCWGG | 5 cut(s) | 246, 540, 1012, 1025, 1038 |
| BseCI | ATCGAT | 1 cut(s) | 185 |
| BseDI | CCNNGG | 2 cut(s) | 1036, 1293 |
| BseGI | GGATG | 5 cut(s) | 241, 973, 1218, 1380, 1533 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 58, 81, 545, 1443 |
| BseMII | CTCAG | 6 cut(s) | 228, 423, 564, 930, 1527, 1851 |
| BseNI | ACTGG | 4 cut(s) | 804, 959, 1417, 1603 |
| BseRI | GAGGAG | 3 cut(s) | 449, 731, 734 |
| BseSI | GKGCMC | 2 cut(s) | 1184, 1566 |
| BseX3I | CGGCCG | 1 cut(s) | 1249 |
| BseXI | GCAGC | 5 cut(s) | 418, 460, 659, 766, 1222 |
| BsgI | GTGCAG | 1 cut(s) | 152 |
| Bsh1236I | CGCG | 2 cut(s) | 7, 912 |
| Bsh1285I | CGRYCG | 2 cut(s) | 70, 1252 |
| BshFI | GGCC | 3 cut(s) | 1015, 1251, 1298 |
| BshNI | GGYRCC | 1 cut(s) | 1048 |
| BshVI | ATCGAT | 1 cut(s) | 185 |
| BsiEI | CGRYCG | 2 cut(s) | 70, 1252 |
| BsiHKAI | GWGCWC | 5 cut(s) | 216, 609, 1184, 1522, 1566 |
| BsiSI | CCGG | 2 cut(s) | 596, 1703 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 58, 81, 545, 1443 |
| BsmAI | GTCTC | 6 cut(s) | 131, 226, 323, 723, 764, 919 |
| BsmBI | CGTCTC | 2 cut(s) | 764, 919 |
| BsnI | GGCC | 3 cut(s) | 1015, 1251, 1298 |
| Bso31I | GGTCTC | 1 cut(s) | 226 |
| Bsp1286I | GDGCHC | 5 cut(s) | 216, 609, 1184, 1522, 1566 |
| Bsp13I | TCCGGA | 2 cut(s) | 595, 1702 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1860 |
| Bsp19I | CCATGG | 1 cut(s) | 1293 |
| BspACI | CCGC | 4 cut(s) | 782, 1209, 1238, 1850 |
| BspANI | GGCC | 3 cut(s) | 1015, 1251, 1298 |
| BspCNI | CTCAG | 6 cut(s) | 229, 424, 565, 929, 1526, 1852 |
| BspDI | ATCGAT | 1 cut(s) | 185 |
| BspEI | TCCGGA | 2 cut(s) | 595, 1702 |
| BspFNI | CGCG | 2 cut(s) | 7, 912 |
| BspHI | TCATGA | 1 cut(s) | 1351 |
| BspLI | GGNNCC | 5 cut(s) | 692, 741, 1050, 1503, 1575 |
| BspMI | ACCTGC | 1 cut(s) | 306 |
| BspPI | GGATC | 5 cut(s) | 190, 530, 1568, 1581, 1837 |
| BspT107I | GGYRCC | 1 cut(s) | 1048 |
| BspTNI | GGTCTC | 1 cut(s) | 226 |
| BsrI | ACTGG | 4 cut(s) | 804, 959, 1417, 1603 |
| BssECI | CCNNGG | 2 cut(s) | 1036, 1293 |
| BssNI | GRCGYC | 1 cut(s) | 990 |
| BssT1I | CCWWGG | 1 cut(s) | 1293 |
| Bst2UI | CCWGG | 5 cut(s) | 246, 540, 1012, 1025, 1038 |
| Bst4CI | ACNGT | 4 cut(s) | 334, 602, 982, 1825 |
| Bst6I | CTCTTC | 6 cut(s) | 321, 344, 360, 617, 660, 1094 |
| BstACI | GRCGYC | 1 cut(s) | 990 |
| BstBAI | YACGTR | 1 cut(s) | 1185 |
| BstC8I | GCNNGC | 1 cut(s) | 441 |
| BstDEI | CTNAG | 7 cut(s) | 237, 432, 573, 916, 1202, 1513, 1860 |
| BstDSI | CCRYGG | 1 cut(s) | 1293 |
| BstEII | GGTNACC | 1 cut(s) | 1213 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 543 |
| BstF5I | GGATG | 5 cut(s) | 241, 973, 1218, 1380, 1533 |
| BstFNI | CGCG | 2 cut(s) | 7, 912 |
| BstHHI | GCGC | 2 cut(s) | 7, 912 |
| BstMAI | GTCTC | 6 cut(s) | 131, 226, 323, 723, 764, 919 |
| BstMCI | CGRYCG | 2 cut(s) | 70, 1252 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 461, 470, 1856 |
| BstNI | CCWGG | 5 cut(s) | 246, 540, 1012, 1025, 1038 |
| BstNSI | RCATGY | 2 cut(s) | 572, 1868 |
| BstPI | GGTNACC | 1 cut(s) | 1213 |
| BstSCI | CCNGG | 5 cut(s) | 244, 538, 1010, 1023, 1036 |
| BstSFI | CTRYAG | 1 cut(s) | 1468 |
| BstSLI | GKGCMC | 2 cut(s) | 1184, 1566 |
| BstUI | CGCG | 2 cut(s) | 7, 912 |
| BstV1I | GCAGC | 5 cut(s) | 418, 460, 659, 766, 1222 |
| BstV2I | GAAGAC | 1 cut(s) | 1137 |
| BstX2I | RGATCY | 4 cut(s) | 535, 763, 1573, 1842 |
| BstYI | RGATCY | 4 cut(s) | 535, 763, 1573, 1842 |
| BstZI | CGGCCG | 1 cut(s) | 1249 |
| Bsu15I | ATCGAT | 1 cut(s) | 185 |
| BsuI | GTATCC | 1 cut(s) | 8 |
| BsuRI | GGCC | 3 cut(s) | 1015, 1251, 1298 |
| BsuTUI | ATCGAT | 1 cut(s) | 185 |
| BtgI | CCRYGG | 1 cut(s) | 1293 |
| BtsCI | GGATG | 5 cut(s) | 241, 973, 1218, 1380, 1533 |
| BtsI | GCAGTG | 1 cut(s) | 621 |
| BtsIMutI | CAGTG | 5 cut(s) | 339, 621, 966, 978, 1437 |
| BveI | ACCTGC | 1 cut(s) | 306 |
| Cac8I | GCNNGC | 1 cut(s) | 441 |
| CciI | TCATGA | 1 cut(s) | 1351 |
| CfoI | GCGC | 2 cut(s) | 7, 912 |
| Cfr13I | GGNCC | 1 cut(s) | 1240 |
| ClaI | ATCGAT | 1 cut(s) | 185 |
| CseI | GACGC | 2 cut(s) | 901, 998 |
| CsiI | ACCWGGT | 1 cut(s) | 1023 |
| Csp6I | GTAC | 4 cut(s) | 254, 999, 1325, 1416 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1708, 1743 |
| CviAII | CATG | 9 cut(s) | 569, 674, 736, 1294, 1339, 1352, 1570, 1750, 1865 |
| CviQI | GTAC | 4 cut(s) | 254, 999, 1325, 1416 |
| DdeI | CTNAG | 7 cut(s) | 237, 432, 573, 916, 1202, 1513, 1860 |
| DraI | TTTAAA | 1 cut(s) | 636 |
| DraIII | CACNNNGTG | 1 cut(s) | 81 |
| EaeI | YGGCCR | 3 cut(s) | 1013, 1249, 1296 |
| EagI | CGGCCG | 1 cut(s) | 1249 |
| Eam1104I | CTCTTC | 6 cut(s) | 321, 344, 360, 617, 660, 1094 |
| EarI | CTCTTC | 6 cut(s) | 321, 344, 360, 617, 660, 1094 |
| Ecl136II | GAGCTC | 1 cut(s) | 607 |
| EclXI | CGGCCG | 1 cut(s) | 1249 |
| Eco130I | CCWWGG | 1 cut(s) | 1293 |
| Eco24I | GRGCYC | 1 cut(s) | 609 |
| Eco31I | GGTCTC | 1 cut(s) | 226 |
| Eco47I | GGWCC | 1 cut(s) | 1240 |
| Eco52I | CGGCCG | 1 cut(s) | 1249 |
| Eco53kI | GAGCTC | 1 cut(s) | 607 |
| Eco72I | CACGTG | 1 cut(s) | 1185 |
| Eco91I | GGTNACC | 1 cut(s) | 1213 |
| EcoICRI | GAGCTC | 1 cut(s) | 607 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 543 |
| EcoO65I | GGTNACC | 1 cut(s) | 1213 |
| EcoRII | CCWGG | 5 cut(s) | 244, 538, 1010, 1023, 1036 |
| EcoT14I | CCWWGG | 1 cut(s) | 1293 |
| EcoT38I | GRGCYC | 1 cut(s) | 609 |
| ErhI | CCWWGG | 1 cut(s) | 1293 |
| Esp3I | CGTCTC | 2 cut(s) | 764, 919 |
| FaeI | CATG | 9 cut(s) | 572, 677, 739, 1297, 1342, 1355, 1573, 1753, 1868 |
| FatI | CATG | 9 cut(s) | 568, 673, 735, 1293, 1338, 1351, 1569, 1749, 1864 |
| FauI | CCCGC | 1 cut(s) | 1202 |
| FbaI | TGATCA | 1 cut(s) | 1405 |
| Fnu4HI | GCNGC | 5 cut(s) | 407, 474, 648, 780, 1236 |
| FokI | GGATG | 5 cut(s) | 228, 980, 1205, 1387, 1540 |
| FriOI | GRGCYC | 1 cut(s) | 609 |
| Fsp4HI | GCNGC | 5 cut(s) | 407, 474, 648, 780, 1236 |
| FspBI | CTAG | 2 cut(s) | 1307, 1328 |
| GlaI | GCGC | 2 cut(s) | 6, 911 |
| GluI | GCNGC | 5 cut(s) | 407, 474, 648, 780, 1236 |
| GsuI | CTGGAG | 2 cut(s) | 788, 1059 |
| HaeIII | GGCC | 3 cut(s) | 1015, 1251, 1298 |
| HapII | CCGG | 2 cut(s) | 596, 1703 |
| HgaI | GACGC | 2 cut(s) | 901, 998 |
| HhaI | GCGC | 2 cut(s) | 7, 912 |
| Hin1I | GRCGYC | 1 cut(s) | 990 |
| Hin1II | CATG | 9 cut(s) | 572, 677, 739, 1297, 1342, 1355, 1573, 1753, 1868 |
| Hin6I | GCGC | 2 cut(s) | 5, 910 |
| HinP1I | GCGC | 2 cut(s) | 5, 910 |
| HincII | GTYRAC | 2 cut(s) | 1533, 1621 |
| HindII | GTYRAC | 2 cut(s) | 1533, 1621 |
| HinfI | GANTC | 6 cut(s) | 173, 506, 1153, 1590, 1654, 1687 |
| HpaII | CCGG | 2 cut(s) | 596, 1703 |
| HphI | GGTGA | 4 cut(s) | 97, 501, 614, 1207 |
| Hpy188I | TCNGA | 5 cut(s) | 178, 205, 1410, 1462, 1659 |
| Hpy99I | CGWCG | 2 cut(s) | 312, 992 |
| HpyAV | CCTTC | 6 cut(s) | 364, 539, 680, 958, 1358, 1659 |
| HpyCH4III | ACNGT | 4 cut(s) | 334, 602, 982, 1825 |
| HpyCH4IV | ACGT | 1 cut(s) | 1184 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 461, 470, 1856 |
| HpyF3I | CTNAG | 7 cut(s) | 237, 432, 573, 916, 1202, 1513, 1860 |
| HpySE526I | ACGT | 1 cut(s) | 1184 |
| Hsp92I | GRCGYC | 1 cut(s) | 990 |
| Hsp92II | CATG | 9 cut(s) | 572, 677, 739, 1297, 1342, 1355, 1573, 1753, 1868 |
| HspAI | GCGC | 2 cut(s) | 5, 910 |
| Kpn2I | TCCGGA | 2 cut(s) | 595, 1702 |
| Ksp22I | TGATCA | 1 cut(s) | 1405 |
| LmnI | GCTCC | 3 cut(s) | 436, 745, 1705 |
| Lsp1109I | GCAGC | 5 cut(s) | 418, 460, 659, 766, 1222 |
| LweI | GCATC | 4 cut(s) | 250, 634, 869, 931 |
| MabI | ACCWGGT | 1 cut(s) | 1023 |
| MaeI | CTAG | 2 cut(s) | 1307, 1328 |
| MaeII | ACGT | 1 cut(s) | 1184 |
| MaeIII | GTNAC | 8 cut(s) | 110, 507, 520, 700, 948, 976, 1213, 1745 |
| MfeI | CAATTG | 1 cut(s) | 831 |
| MflI | RGATCY | 4 cut(s) | 535, 763, 1573, 1842 |
| MhlI | GDGCHC | 5 cut(s) | 216, 609, 1184, 1522, 1566 |
| MlsI | TGGCCA | 2 cut(s) | 1015, 1298 |
| MluNI | TGGCCA | 2 cut(s) | 1015, 1298 |
| MlyI | GAGTC | 3 cut(s) | 182, 515, 1584 |
| MmeI | TCCRAC | 1 cut(s) | 244 |
| Mox20I | TGGCCA | 2 cut(s) | 1015, 1298 |
| MroI | TCCGGA | 2 cut(s) | 595, 1702 |
| MroXI | GAANNNNTTC | 2 cut(s) | 378, 1196 |
| MscI | TGGCCA | 2 cut(s) | 1015, 1298 |
| MseI | TTAA | 7 cut(s) | 161, 635, 1056, 1169, 1581, 1632, 1888 |
| MslI | CAYNNNNRTG | 2 cut(s) | 792, 1423 |
| Msp20I | TGGCCA | 2 cut(s) | 1015, 1298 |
| MspA1I | CMGCKG | 2 cut(s) | 650, 874 |
| MspI | CCGG | 2 cut(s) | 596, 1703 |
| MspR9I | CCNGG | 5 cut(s) | 246, 540, 1012, 1025, 1038 |
| MunI | CAATTG | 1 cut(s) | 831 |
| MvaI | CCWGG | 5 cut(s) | 246, 540, 1012, 1025, 1038 |
| MvnI | CGCG | 2 cut(s) | 7, 912 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 461, 470, 1856 |
| NcoI | CCATGG | 1 cut(s) | 1293 |
| NlaIII | CATG | 9 cut(s) | 572, 677, 739, 1297, 1342, 1355, 1573, 1753, 1868 |
| NlaIV | GGNNCC | 5 cut(s) | 692, 741, 1050, 1503, 1575 |
| NmuCI | GTSAC | 4 cut(s) | 507, 520, 976, 1213 |
| NspI | RCATGY | 2 cut(s) | 572, 1868 |
| OliI | CACNNNNGTG | 1 cut(s) | 1423 |
| PagI | TCATGA | 1 cut(s) | 1351 |
| PdmI | GAANNNNTTC | 2 cut(s) | 378, 1196 |
| PfeI | GAWTC | 3 cut(s) | 1153, 1654, 1687 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 81 |
| PkrI | GCNGC | 5 cut(s) | 408, 475, 649, 781, 1237 |
| Ple19I | CGATCG | 1 cut(s) | 70 |
| PleI | GAGTC | 3 cut(s) | 181, 514, 1584 |
| PmaCI | CACGTG | 1 cut(s) | 1185 |
| PmlI | CACGTG | 1 cut(s) | 1185 |
| PpsI | GAGTC | 3 cut(s) | 181, 514, 1584 |
| Ppu21I | YACGTR | 1 cut(s) | 1185 |
| Psp124BI | GAGCTC | 1 cut(s) | 609 |
| Psp6I | CCWGG | 5 cut(s) | 244, 538, 1010, 1023, 1036 |
| PspCI | CACGTG | 1 cut(s) | 1185 |
| PspEI | GGTNACC | 1 cut(s) | 1213 |
| PspGI | CCWGG | 5 cut(s) | 244, 538, 1010, 1023, 1036 |
| PspN4I | GGNNCC | 5 cut(s) | 692, 741, 1050, 1503, 1575 |
| PspPI | GGNCC | 1 cut(s) | 1240 |
| PsuI | RGATCY | 4 cut(s) | 535, 763, 1573, 1842 |
| PvuI | CGATCG | 1 cut(s) | 70 |
| PvuII | CAGCTG | 2 cut(s) | 650, 874 |
| RsaI | GTAC | 4 cut(s) | 255, 1000, 1326, 1417 |
| RsaNI | GTAC | 4 cut(s) | 254, 999, 1325, 1416 |
| RseI | CAYNNNNRTG | 2 cut(s) | 792, 1423 |
| SacI | GAGCTC | 1 cut(s) | 609 |
| SaqAI | TTAA | 7 cut(s) | 161, 635, 1056, 1169, 1581, 1632, 1888 |
| SatI | GCNGC | 5 cut(s) | 407, 474, 648, 780, 1236 |
| Sau96I | GGNCC | 1 cut(s) | 1240 |
| SchI | GAGTC | 3 cut(s) | 182, 515, 1584 |
| ScrFI | CCNGG | 5 cut(s) | 246, 540, 1012, 1025, 1038 |
| SduI | GDGCHC | 5 cut(s) | 216, 609, 1184, 1522, 1566 |
| SexAI | ACCWGGT | 1 cut(s) | 1023 |
| SfaNI | GCATC | 4 cut(s) | 250, 634, 869, 931 |
| SfcI | CTRYAG | 1 cut(s) | 1468 |
| SinI | GGWCC | 1 cut(s) | 1240 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 792, 1423 |
| SpeI | ACTAGT | 1 cut(s) | 1327 |
| SsiI | CCGC | 4 cut(s) | 782, 1209, 1238, 1850 |
| SspMI | CTAG | 2 cut(s) | 1307, 1328 |
| SstI | GAGCTC | 1 cut(s) | 609 |
| StyD4I | CCNGG | 5 cut(s) | 244, 538, 1010, 1023, 1036 |
| StyI | CCWWGG | 1 cut(s) | 1293 |
| TaaI | ACNGT | 4 cut(s) | 334, 602, 982, 1825 |
| TaiI | ACGT | 1 cut(s) | 1187 |
| TaqI | TCGA | 6 cut(s) | 66, 185, 714, 863, 925, 1593 |
| TatI | WGTACW | 1 cut(s) | 1324 |
| TfiI | GAWTC | 3 cut(s) | 1153, 1654, 1687 |
| Tru1I | TTAA | 7 cut(s) | 161, 635, 1056, 1169, 1581, 1632, 1888 |
| Tru9I | TTAA | 7 cut(s) | 161, 635, 1056, 1169, 1581, 1632, 1888 |
| TscAI | CASTG | 5 cut(s) | 339, 621, 966, 985, 1444 |
| TseFI | GTSAC | 4 cut(s) | 507, 520, 976, 1213 |
| TseI | GCWGC | 5 cut(s) | 406, 473, 647, 779, 1235 |
| Tsp45I | GTSAC | 4 cut(s) | 507, 520, 976, 1213 |
| TspRI | CASTG | 5 cut(s) | 339, 621, 966, 985, 1444 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 81 |
| VneI | GTGCAC | 2 cut(s) | 1180, 1562 |
| VpaK11BI | GGWCC | 1 cut(s) | 1240 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 543 |
| XapI | RAATTY | 2 cut(s) | 150, 1810 |
| XceI | RCATGY | 2 cut(s) | 572, 1868 |
| XmnI | GAANNNNTTC | 2 cut(s) | 378, 1196 |
| XspI | CTAG | 2 cut(s) | 1307, 1328 |