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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 201 |
| AclWI | GGATC | 3 cut(s) | 11, 41, 54 |
| AcsI | RAATTY | 1 cut(s) | 160 |
| AfaI | GTAC | 2 cut(s) | 31, 206 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 26 |
| AgsI | TTSAA | 1 cut(s) | 55 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 87, 119 |
| AlwI | GGATC | 3 cut(s) | 11, 41, 54 |
| ApeKI | GCWGC | 2 cut(s) | 285, 288 |
| ApoI | RAATTY | 1 cut(s) | 160 |
| AsuHPI | GGTGA | 1 cut(s) | 358 |
| BamHI | GGATCC | 1 cut(s) | 46 |
| BbvI | GCAGC | 2 cut(s) | 297, 300 |
| BisI | GCNGC | 2 cut(s) | 286, 289 |
| BlsI | GCNGC | 2 cut(s) | 287, 290 |
| BmiI | GGNNCC | 1 cut(s) | 48 |
| BmsI | GCATC | 1 cut(s) | 204 |
| BpmI | CTGGAG | 1 cut(s) | 93 |
| Bsa29I | ATCGAT | 1 cut(s) | 312 |
| BsaBI | GATNNNNATC | 1 cut(s) | 312 |
| BsaJI | CCNNGG | 1 cut(s) | 25 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 188, 218 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 26 |
| Bse1I | ACTGG | 1 cut(s) | 76 |
| Bse8I | GATNNNNATC | 1 cut(s) | 312 |
| BseCI | ATCGAT | 1 cut(s) | 312 |
| BseDI | CCNNGG | 1 cut(s) | 25 |
| BseGI | GGATG | 1 cut(s) | 87 |
| BseJI | GATNNNNATC | 1 cut(s) | 312 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 26 |
| BseNI | ACTGG | 1 cut(s) | 76 |
| BseRI | GAGGAG | 2 cut(s) | 168, 292 |
| BseXI | GCAGC | 2 cut(s) | 297, 300 |
| BshVI | ATCGAT | 1 cut(s) | 312 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 26 |
| BsmI | GAATGC | 1 cut(s) | 171 |
| Bsp143I | GATC | 3 cut(s) | 16, 46, 313 |
| BspACI | CCGC | 1 cut(s) | 201 |
| BspDI | ATCGAT | 1 cut(s) | 312 |
| BspLI | GGNNCC | 1 cut(s) | 48 |
| BspPI | GGATC | 3 cut(s) | 11, 41, 54 |
| BsrI | ACTGG | 1 cut(s) | 76 |
| BssECI | CCNNGG | 1 cut(s) | 25 |
| BssMI | GATC | 3 cut(s) | 16, 46, 313 |
| BstC8I | GCNNGC | 1 cut(s) | 169 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 24 |
| BstF5I | GGATG | 1 cut(s) | 87 |
| BstKTI | GATC | 3 cut(s) | 19, 49, 316 |
| BstMBI | GATC | 3 cut(s) | 16, 46, 313 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 223 |
| BstNSI | RCATGY | 1 cut(s) | 226 |
| BstV1I | GCAGC | 2 cut(s) | 297, 300 |
| BstX2I | RGATCY | 1 cut(s) | 46 |
| BstYI | RGATCY | 1 cut(s) | 46 |
| Bsu15I | ATCGAT | 1 cut(s) | 312 |
| BsuTUI | ATCGAT | 1 cut(s) | 312 |
| BtsCI | GGATG | 1 cut(s) | 87 |
| BtsIMutI | CAGTG | 1 cut(s) | 69 |
| Cac8I | GCNNGC | 1 cut(s) | 169 |
| ClaI | ATCGAT | 1 cut(s) | 312 |
| Csp6I | GTAC | 2 cut(s) | 30, 205 |
| CviAII | CATG | 1 cut(s) | 223 |
| CviJI | RGCY | 2 cut(s) | 167, 291 |
| CviKI_1 | RGCY | 2 cut(s) | 167, 291 |
| CviQI | GTAC | 2 cut(s) | 30, 205 |
| DpnI | GATC | 3 cut(s) | 18, 48, 315 |
| DpnII | GATC | 3 cut(s) | 16, 46, 313 |
| Eco32I | GATATC | 2 cut(s) | 232, 310 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 24 |
| EcoRV | GATATC | 2 cut(s) | 232, 310 |
| FaeI | CATG | 1 cut(s) | 226 |
| FaiI | YATR | 7 cut(s) | 37, 44, 92, 110, 224, 297, 357 |
| FatI | CATG | 1 cut(s) | 222 |
| FauI | CCCGC | 1 cut(s) | 194 |
| Fnu4HI | GCNGC | 2 cut(s) | 286, 289 |
| FokI | GGATG | 1 cut(s) | 94 |
| Fsp4HI | GCNGC | 2 cut(s) | 286, 289 |
| GluI | GCNGC | 2 cut(s) | 286, 289 |
| GsuI | CTGGAG | 1 cut(s) | 93 |
| Hin1II | CATG | 1 cut(s) | 226 |
| HincII | GTYRAC | 1 cut(s) | 6 |
| HindII | GTYRAC | 1 cut(s) | 6 |
| HphI | GGTGA | 1 cut(s) | 358 |
| Hpy166II | GTNNAC | 1 cut(s) | 6 |
| Hpy188I | TCNGA | 1 cut(s) | 141 |
| Hpy188III | TCNNGA | 1 cut(s) | 20 |
| Hpy8I | GTNNAC | 1 cut(s) | 6 |
| HpyAV | CCTTC | 1 cut(s) | 127 |
| HpyCH4V | TGCA | 2 cut(s) | 35, 101 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 223 |
| Hsp92II | CATG | 1 cut(s) | 226 |
| Kzo9I | GATC | 3 cut(s) | 16, 46, 313 |
| LpnPI | CCDG | 3 cut(s) | 33, 57, 153 |
| Lsp1109I | GCAGC | 2 cut(s) | 297, 300 |
| LweI | GCATC | 1 cut(s) | 204 |
| MalI | GATC | 3 cut(s) | 18, 48, 315 |
| MboI | GATC | 3 cut(s) | 16, 46, 313 |
| MboII | GAAGA | 3 cut(s) | 139, 142, 317 |
| MfeI | CAATTG | 1 cut(s) | 9 |
| MflI | RGATCY | 1 cut(s) | 46 |
| MluCI | AATT | 2 cut(s) | 9, 160 |
| MmeI | TCCRAC | 1 cut(s) | 119 |
| MnlI | CCTC | 6 cut(s) | 20, 186, 189, 232, 270, 275 |
| MseI | TTAA | 1 cut(s) | 114 |
| MunI | CAATTG | 1 cut(s) | 9 |
| Mva1269I | GAATGC | 1 cut(s) | 171 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 223 |
| NdeII | GATC | 3 cut(s) | 16, 46, 313 |
| NlaIII | CATG | 1 cut(s) | 226 |
| NlaIV | GGNNCC | 1 cut(s) | 48 |
| NspI | RCATGY | 1 cut(s) | 226 |
| PctI | GAATGC | 1 cut(s) | 171 |
| PkrI | GCNGC | 2 cut(s) | 287, 290 |
| PspN4I | GGNNCC | 1 cut(s) | 48 |
| PsuI | RGATCY | 1 cut(s) | 46 |
| RsaI | GTAC | 2 cut(s) | 31, 206 |
| RsaNI | GTAC | 2 cut(s) | 30, 205 |
| SaqAI | TTAA | 1 cut(s) | 114 |
| SatI | GCNGC | 2 cut(s) | 286, 289 |
| Sau3AI | GATC | 3 cut(s) | 16, 46, 313 |
| SetI | ASST | 1 cut(s) | 31 |
| SfaNI | GCATC | 1 cut(s) | 204 |
| Sse9I | AATT | 2 cut(s) | 9, 160 |
| SsiI | CCGC | 1 cut(s) | 201 |
| TaqI | TCGA | 1 cut(s) | 312 |
| TaqII | GACCGA | 1 cut(s) | 39 |
| TasI | AATT | 2 cut(s) | 9, 160 |
| Tru1I | TTAA | 1 cut(s) | 114 |
| Tru9I | TTAA | 1 cut(s) | 114 |
| TscAI | CASTG | 1 cut(s) | 76 |
| TseI | GCWGC | 2 cut(s) | 285, 288 |
| TspRI | CASTG | 1 cut(s) | 76 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 24 |
| XapI | RAATTY | 1 cut(s) | 160 |
| XceI | RCATGY | 1 cut(s) | 226 |