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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 213 |
| AccIII | TCCGGA | 1 cut(s) | 465 |
| AciI | CCGC | 1 cut(s) | 345 |
| AclWI | GGATC | 5 cut(s) | 149, 182, 195, 380, 393 |
| AcuI | CTGAAG | 1 cut(s) | 68 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 197, 395 |
| AjnI | CCWGG | 3 cut(s) | 127, 196, 426 |
| AluBI | AGCT | 2 cut(s) | 77, 434 |
| AluI | AGCT | 2 cut(s) | 77, 434 |
| Alw26I | GTCTC | 1 cut(s) | 164 |
| AlwI | GGATC | 5 cut(s) | 149, 182, 195, 380, 393 |
| Ama87I | CYCGRG | 1 cut(s) | 273 |
| Aor13HI | TCCGGA | 1 cut(s) | 465 |
| AoxI | GGCC | 1 cut(s) | 130 |
| ApeKI | GCWGC | 1 cut(s) | 74 |
| AspLEI | GCGC | 1 cut(s) | 363 |
| AsuHPI | GGTGA | 1 cut(s) | 110 |
| AvaI | CYCGRG | 1 cut(s) | 273 |
| BamHI | GGATCC | 2 cut(s) | 187, 385 |
| BbsI | GAAGAC | 1 cut(s) | 95 |
| BbvI | GCAGC | 1 cut(s) | 86 |
| BceAI | ACGGC | 1 cut(s) | 117 |
| BciT130I | CCWGG | 3 cut(s) | 129, 198, 428 |
| BcoDI | GTCTC | 1 cut(s) | 164 |
| BfmI | CTRYAG | 1 cut(s) | 24 |
| BisI | GCNGC | 1 cut(s) | 75 |
| BlsI | GCNGC | 1 cut(s) | 76 |
| Bme1390I | CCNGG | 3 cut(s) | 129, 198, 428 |
| BmeT110I | CYCGRG | 1 cut(s) | 273 |
| BmiI | GGNNCC | 2 cut(s) | 189, 387 |
| BmrFI | CCNGG | 3 cut(s) | 129, 198, 428 |
| BmsI | GCATC | 2 cut(s) | 105, 348 |
| BpiI | GAAGAC | 1 cut(s) | 95 |
| BsaI | GGTCTC | 1 cut(s) | 164 |
| BsaJI | CCNNGG | 2 cut(s) | 393, 417 |
| BsaWI | WCCGGW | 1 cut(s) | 465 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 197, 395 |
| Bse1I | ACTGG | 1 cut(s) | 72 |
| Bse3DI | GCAATG | 1 cut(s) | 340 |
| BseAI | TCCGGA | 1 cut(s) | 465 |
| BseBI | CCWGG | 3 cut(s) | 129, 198, 428 |
| BseDI | CCNNGG | 2 cut(s) | 393, 417 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 197, 395 |
| BseMI | GCAATG | 1 cut(s) | 340 |
| BseMII | CTCAG | 1 cut(s) | 324 |
| BseNI | ACTGG | 1 cut(s) | 72 |
| BseXI | GCAGC | 1 cut(s) | 86 |
| BseYI | CCCAGC | 1 cut(s) | 329 |
| BshFI | GGCC | 1 cut(s) | 132 |
| BsiHKCI | CYCGRG | 1 cut(s) | 273 |
| BsiSI | CCGG | 1 cut(s) | 466 |
| BslFI | GGGAC | 1 cut(s) | 386 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 197, 395 |
| BsmAI | GTCTC | 1 cut(s) | 164 |
| BsmFI | GGGAC | 1 cut(s) | 386 |
| BsmI | GAATGC | 1 cut(s) | 347 |
| BsnI | GGCC | 1 cut(s) | 132 |
| Bso31I | GGTCTC | 1 cut(s) | 164 |
| BsoBI | CYCGRG | 1 cut(s) | 273 |
| Bsp13I | TCCGGA | 1 cut(s) | 465 |
| Bsp143I | GATC | 4 cut(s) | 59, 141, 187, 385 |
| BspACI | CCGC | 1 cut(s) | 345 |
| BspANI | GGCC | 1 cut(s) | 132 |
| BspCNI | CTCAG | 1 cut(s) | 323 |
| BspEI | TCCGGA | 1 cut(s) | 465 |
| BspHI | TCATGA | 2 cut(s) | 111, 366 |
| BspLI | GGNNCC | 2 cut(s) | 189, 387 |
| BspPI | GGATC | 5 cut(s) | 149, 182, 195, 380, 393 |
| BspTNI | GGTCTC | 1 cut(s) | 164 |
| BsrDI | GCAATG | 1 cut(s) | 340 |
| BsrI | ACTGG | 1 cut(s) | 72 |
| BssECI | CCNNGG | 2 cut(s) | 393, 417 |
| BssMI | GATC | 4 cut(s) | 59, 141, 187, 385 |
| BssT1I | CCWWGG | 2 cut(s) | 393, 417 |
| Bst2UI | CCWGG | 3 cut(s) | 129, 198, 428 |
| Bst4CI | ACNGT | 4 cut(s) | 28, 98, 175, 242 |
| Bst6I | CTCTTC | 1 cut(s) | 213 |
| BstDEI | CTNAG | 1 cut(s) | 310 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 195 |
| BstHHI | GCGC | 1 cut(s) | 363 |
| BstKTI | GATC | 4 cut(s) | 62, 144, 190, 388 |
| BstMAI | GTCTC | 1 cut(s) | 164 |
| BstMBI | GATC | 4 cut(s) | 59, 141, 187, 385 |
| BstNI | CCWGG | 3 cut(s) | 129, 198, 428 |
| BstSCI | CCNGG | 3 cut(s) | 127, 196, 426 |
| BstSFI | CTRYAG | 1 cut(s) | 24 |
| BstV1I | GCAGC | 1 cut(s) | 86 |
| BstV2I | GAAGAC | 1 cut(s) | 95 |
| BstX2I | RGATCY | 3 cut(s) | 141, 187, 385 |
| BstYI | RGATCY | 3 cut(s) | 141, 187, 385 |
| BsuRI | GGCC | 1 cut(s) | 132 |
| BtsIMutI | CAGTG | 1 cut(s) | 247 |
| CciI | TCATGA | 2 cut(s) | 111, 366 |
| CfoI | GCGC | 1 cut(s) | 363 |
| CviAII | CATG | 3 cut(s) | 112, 367, 382 |
| CviJI | RGCY | 6 cut(s) | 9, 77, 132, 272, 434, 452 |
| CviKI_1 | RGCY | 6 cut(s) | 9, 77, 132, 272, 434, 452 |
| DdeI | CTNAG | 1 cut(s) | 310 |
| DpnI | GATC | 4 cut(s) | 61, 143, 189, 387 |
| DpnII | GATC | 4 cut(s) | 59, 141, 187, 385 |
| DraI | TTTAAA | 1 cut(s) | 249 |
| Eam1104I | CTCTTC | 1 cut(s) | 213 |
| EarI | CTCTTC | 1 cut(s) | 213 |
| Eco130I | CCWWGG | 2 cut(s) | 393, 417 |
| Eco31I | GGTCTC | 1 cut(s) | 164 |
| Eco57I | CTGAAG | 1 cut(s) | 68 |
| Eco88I | CYCGRG | 1 cut(s) | 273 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 195 |
| EcoRII | CCWGG | 3 cut(s) | 127, 196, 426 |
| EcoT14I | CCWWGG | 2 cut(s) | 393, 417 |
| ErhI | CCWWGG | 2 cut(s) | 393, 417 |
| FaeI | CATG | 3 cut(s) | 115, 370, 385 |
| FaqI | GGGAC | 1 cut(s) | 386 |
| FatI | CATG | 3 cut(s) | 111, 366, 381 |
| FauI | CCCGC | 1 cut(s) | 338 |
| FblI | GTMKAC | 1 cut(s) | 213 |
| Fnu4HI | GCNGC | 1 cut(s) | 75 |
| Fsp4HI | GCNGC | 1 cut(s) | 75 |
| GlaI | GCGC | 1 cut(s) | 362 |
| GluI | GCNGC | 1 cut(s) | 75 |
| GsaI | CCCAGC | 1 cut(s) | 333 |
| HaeIII | GGCC | 1 cut(s) | 132 |
| HapII | CCGG | 1 cut(s) | 466 |
| HhaI | GCGC | 1 cut(s) | 363 |
| Hin1II | CATG | 3 cut(s) | 115, 370, 385 |
| Hin6I | GCGC | 1 cut(s) | 361 |
| HinP1I | GCGC | 1 cut(s) | 361 |
| HincII | GTYRAC | 1 cut(s) | 214 |
| HindII | GTYRAC | 1 cut(s) | 214 |
| HindIII | AAGCTT | 1 cut(s) | 432 |
| HpaII | CCGG | 1 cut(s) | 466 |
| HphI | GGTGA | 1 cut(s) | 110 |
| Hpy166II | GTNNAC | 3 cut(s) | 101, 214, 238 |
| Hpy188I | TCNGA | 1 cut(s) | 87 |
| Hpy188III | TCNNGA | 6 cut(s) | 63, 112, 185, 235, 367, 466 |
| Hpy8I | GTNNAC | 3 cut(s) | 101, 214, 238 |
| Hpy99I | CGWCG | 1 cut(s) | 218 |
| HpyAV | CCTTC | 2 cut(s) | 160, 399 |
| HpyCH4III | ACNGT | 4 cut(s) | 28, 98, 175, 242 |
| HpyCH4IV | ACGT | 1 cut(s) | 283 |
| HpyF3I | CTNAG | 1 cut(s) | 310 |
| HpySE526I | ACGT | 1 cut(s) | 283 |
| Hsp92II | CATG | 3 cut(s) | 115, 370, 385 |
| HspAI | GCGC | 1 cut(s) | 361 |
| Kpn2I | TCCGGA | 1 cut(s) | 465 |
| Kzo9I | GATC | 4 cut(s) | 59, 141, 187, 385 |
| Lsp1109I | GCAGC | 1 cut(s) | 86 |
| LweI | GCATC | 2 cut(s) | 105, 348 |
| MaeII | ACGT | 1 cut(s) | 283 |
| MalI | GATC | 4 cut(s) | 61, 143, 189, 387 |
| MboI | GATC | 4 cut(s) | 59, 141, 187, 385 |
| MboII | GAAGA | 2 cut(s) | 100, 230 |
| MflI | RGATCY | 3 cut(s) | 141, 187, 385 |
| MluCI | AATT | 3 cut(s) | 294, 495, 511 |
| MnlI | CCTC | 3 cut(s) | 201, 214, 363 |
| MroI | TCCGGA | 1 cut(s) | 465 |
| MseI | TTAA | 2 cut(s) | 248, 501 |
| MslI | CAYNNNNRTG | 1 cut(s) | 380 |
| MspI | CCGG | 1 cut(s) | 466 |
| MspR9I | CCNGG | 3 cut(s) | 129, 198, 428 |
| Mva1269I | GAATGC | 1 cut(s) | 347 |
| MvaI | CCWGG | 3 cut(s) | 129, 198, 428 |
| NdeII | GATC | 4 cut(s) | 59, 141, 187, 385 |
| NlaIII | CATG | 3 cut(s) | 115, 370, 385 |
| NlaIV | GGNNCC | 2 cut(s) | 189, 387 |
| PagI | TCATGA | 2 cut(s) | 111, 366 |
| PctI | GAATGC | 1 cut(s) | 347 |
| PkrI | GCNGC | 1 cut(s) | 76 |
| Psp6I | CCWGG | 3 cut(s) | 127, 196, 426 |
| PspFI | CCCAGC | 1 cut(s) | 329 |
| PspGI | CCWGG | 3 cut(s) | 127, 196, 426 |
| PspN4I | GGNNCC | 2 cut(s) | 189, 387 |
| PsuI | RGATCY | 3 cut(s) | 141, 187, 385 |
| RseI | CAYNNNNRTG | 1 cut(s) | 380 |
| SalI | GTCGAC | 1 cut(s) | 212 |
| SaqAI | TTAA | 2 cut(s) | 248, 501 |
| SatI | GCNGC | 1 cut(s) | 75 |
| Sau3AI | GATC | 4 cut(s) | 59, 141, 187, 385 |
| ScrFI | CCNGG | 3 cut(s) | 129, 198, 428 |
| SetI | ASST | 4 cut(s) | 79, 202, 286, 436 |
| SfaNI | GCATC | 2 cut(s) | 105, 348 |
| SfcI | CTRYAG | 1 cut(s) | 24 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 380 |
| Sse9I | AATT | 3 cut(s) | 294, 495, 511 |
| SsiI | CCGC | 1 cut(s) | 345 |
| StyD4I | CCNGG | 3 cut(s) | 127, 196, 426 |
| StyI | CCWWGG | 2 cut(s) | 393, 417 |
| TaaI | ACNGT | 4 cut(s) | 28, 98, 175, 242 |
| TaiI | ACGT | 1 cut(s) | 286 |
| TaqI | TCGA | 4 cut(s) | 15, 79, 213, 339 |
| TasI | AATT | 3 cut(s) | 294, 495, 511 |
| Tru1I | TTAA | 2 cut(s) | 248, 501 |
| Tru9I | TTAA | 2 cut(s) | 248, 501 |
| TscAI | CASTG | 1 cut(s) | 247 |
| TseI | GCWGC | 1 cut(s) | 74 |
| TspDTI | ATGAA | 5 cut(s) | 100, 355, 426, 474, 486 |
| TspRI | CASTG | 1 cut(s) | 247 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 195 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 135 |
| XmiI | GTMKAC | 1 cut(s) | 213 |