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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 25, 365 |
| AfaI | GTAC | 1 cut(s) | 90 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 380 |
| AgsI | TTSAA | 2 cut(s) | 161, 368 |
| AjnI | CCWGG | 2 cut(s) | 79, 373 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 176, 208 |
| AluBI | AGCT | 3 cut(s) | 119, 233, 331 |
| AluI | AGCT | 3 cut(s) | 119, 233, 331 |
| Alw21I | GWGCWC | 1 cut(s) | 51 |
| Alw26I | GTCTC | 2 cut(s) | 61, 158 |
| AlwI | GGATC | 2 cut(s) | 25, 365 |
| Ama87I | CYCGRG | 1 cut(s) | 71 |
| ApeKI | GCWGC | 3 cut(s) | 241, 308, 331 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 213 |
| AsuHPI | GGTGA | 1 cut(s) | 336 |
| AvaI | CYCGRG | 1 cut(s) | 71 |
| Bbv12I | GWGCWC | 1 cut(s) | 51 |
| BbvCI | CCTCAGC | 1 cut(s) | 267 |
| BbvI | GCAGC | 3 cut(s) | 253, 318, 320 |
| BccI | CCATC | 1 cut(s) | 8 |
| BciT130I | CCWGG | 2 cut(s) | 81, 375 |
| BcoDI | GTCTC | 2 cut(s) | 61, 158 |
| BisI | GCNGC | 3 cut(s) | 242, 309, 332 |
| BlsI | GCNGC | 3 cut(s) | 243, 310, 333 |
| Bme1390I | CCNGG | 2 cut(s) | 81, 375 |
| BmeT110I | CYCGRG | 1 cut(s) | 71 |
| BmrFI | CCNGG | 2 cut(s) | 81, 375 |
| BmsI | GCATC | 1 cut(s) | 85 |
| Bpu10I | CCTNAGC | 1 cut(s) | 267 |
| Bsa29I | ATCGAT | 1 cut(s) | 20 |
| BsaI | GGTCTC | 1 cut(s) | 61 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 380 |
| BseBI | CCWGG | 2 cut(s) | 81, 375 |
| BseCI | ATCGAT | 1 cut(s) | 20 |
| BseGI | GGATG | 1 cut(s) | 76 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 380 |
| BseMII | CTCAG | 1 cut(s) | 258 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseXI | GCAGC | 3 cut(s) | 253, 318, 320 |
| BshVI | ATCGAT | 1 cut(s) | 20 |
| BsiHKAI | GWGCWC | 1 cut(s) | 51 |
| BsiHKCI | CYCGRG | 1 cut(s) | 71 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 380 |
| BsmAI | GTCTC | 2 cut(s) | 61, 158 |
| Bso31I | GGTCTC | 1 cut(s) | 61 |
| BsoBI | CYCGRG | 1 cut(s) | 71 |
| Bsp1286I | GDGCHC | 1 cut(s) | 51 |
| Bsp143I | GATC | 3 cut(s) | 17, 130, 370 |
| BspCNI | CTCAG | 1 cut(s) | 259 |
| BspDI | ATCGAT | 1 cut(s) | 20 |
| BspPI | GGATC | 2 cut(s) | 25, 365 |
| BspTNI | GGTCTC | 1 cut(s) | 61 |
| BssMI | GATC | 3 cut(s) | 17, 130, 370 |
| Bst2UI | CCWGG | 2 cut(s) | 81, 375 |
| Bst4CI | ACNGT | 1 cut(s) | 169 |
| Bst6I | CTCTTC | 3 cut(s) | 156, 179, 195 |
| BstC8I | GCNNGC | 1 cut(s) | 276 |
| BstDEI | CTNAG | 1 cut(s) | 267 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 378 |
| BstF5I | GGATG | 1 cut(s) | 76 |
| BstKTI | GATC | 3 cut(s) | 20, 133, 373 |
| BstMAI | GTCTC | 2 cut(s) | 61, 158 |
| BstMBI | GATC | 3 cut(s) | 17, 130, 370 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 296, 305 |
| BstNI | CCWGG | 2 cut(s) | 81, 375 |
| BstSCI | CCNGG | 2 cut(s) | 79, 373 |
| BstV1I | GCAGC | 3 cut(s) | 253, 318, 320 |
| BstX2I | RGATCY | 1 cut(s) | 370 |
| BstYI | RGATCY | 1 cut(s) | 370 |
| Bsu15I | ATCGAT | 1 cut(s) | 20 |
| BsuTUI | ATCGAT | 1 cut(s) | 20 |
| BtsCI | GGATG | 1 cut(s) | 76 |
| BtsIMutI | CAGTG | 1 cut(s) | 174 |
| Cac8I | GCNNGC | 1 cut(s) | 276 |
| ClaI | ATCGAT | 1 cut(s) | 20 |
| Csp6I | GTAC | 1 cut(s) | 89 |
| CviJI | RGCY | 4 cut(s) | 119, 233, 290, 331 |
| CviKI_1 | RGCY | 4 cut(s) | 119, 233, 290, 331 |
| CviQI | GTAC | 1 cut(s) | 89 |
| DdeI | CTNAG | 1 cut(s) | 267 |
| DpnI | GATC | 3 cut(s) | 19, 132, 372 |
| DpnII | GATC | 3 cut(s) | 17, 130, 370 |
| Eam1104I | CTCTTC | 3 cut(s) | 156, 179, 195 |
| EarI | CTCTTC | 3 cut(s) | 156, 179, 195 |
| Eco31I | GGTCTC | 1 cut(s) | 61 |
| Eco88I | CYCGRG | 1 cut(s) | 71 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 378 |
| EcoRII | CCWGG | 2 cut(s) | 79, 373 |
| FaiI | YATR | 3 cut(s) | 108, 238, 280 |
| Fnu4HI | GCNGC | 3 cut(s) | 242, 309, 332 |
| FokI | GGATG | 1 cut(s) | 63 |
| Fsp4HI | GCNGC | 3 cut(s) | 242, 309, 332 |
| GluI | GCNGC | 3 cut(s) | 242, 309, 332 |
| HinfI | GANTC | 2 cut(s) | 8, 341 |
| HphI | GGTGA | 1 cut(s) | 336 |
| Hpy188I | TCNGA | 2 cut(s) | 13, 40 |
| Hpy188III | TCNNGA | 2 cut(s) | 368, 381 |
| Hpy99I | CGWCG | 1 cut(s) | 147 |
| HpyAV | CCTTC | 2 cut(s) | 199, 374 |
| HpyCH4III | ACNGT | 1 cut(s) | 169 |
| HpyCH4V | TGCA | 3 cut(s) | 221, 278, 299 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 296, 305 |
| HpyF3I | CTNAG | 1 cut(s) | 267 |
| Kzo9I | GATC | 3 cut(s) | 17, 130, 370 |
| LmnI | GCTCC | 1 cut(s) | 271 |
| LpnPI | CCDG | 7 cut(s) | 66, 93, 129, 230, 360, 366, 366 |
| Lsp1109I | GCAGC | 3 cut(s) | 253, 318, 320 |
| LweI | GCATC | 1 cut(s) | 85 |
| MaeIII | GTNAC | 2 cut(s) | 342, 355 |
| MalI | GATC | 3 cut(s) | 19, 132, 372 |
| MboI | GATC | 3 cut(s) | 17, 130, 370 |
| MboII | GAAGA | 3 cut(s) | 173, 196, 212 |
| MflI | RGATCY | 1 cut(s) | 370 |
| MhlI | GDGCHC | 1 cut(s) | 51 |
| MluCI | AATT | 2 cut(s) | 302, 315 |
| MlyI | GAGTC | 2 cut(s) | 17, 350 |
| MmeI | TCCRAC | 1 cut(s) | 79 |
| MnlI | CCTC | 5 cut(s) | 95, 165, 180, 190, 262 |
| MroXI | GAANNNNTTC | 1 cut(s) | 213 |
| MspR9I | CCNGG | 2 cut(s) | 81, 375 |
| MvaI | CCWGG | 2 cut(s) | 81, 375 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 296, 305 |
| NdeII | GATC | 3 cut(s) | 17, 130, 370 |
| NmuCI | GTSAC | 2 cut(s) | 342, 355 |
| PdmI | GAANNNNTTC | 1 cut(s) | 213 |
| PkrI | GCNGC | 3 cut(s) | 243, 310, 333 |
| PleI | GAGTC | 2 cut(s) | 16, 349 |
| PpsI | GAGTC | 2 cut(s) | 16, 349 |
| Psp6I | CCWGG | 2 cut(s) | 79, 373 |
| PspGI | CCWGG | 2 cut(s) | 79, 373 |
| PsuI | RGATCY | 1 cut(s) | 370 |
| RsaI | GTAC | 1 cut(s) | 90 |
| RsaNI | GTAC | 1 cut(s) | 89 |
| SatI | GCNGC | 3 cut(s) | 242, 309, 332 |
| Sau3AI | GATC | 3 cut(s) | 17, 130, 370 |
| SchI | GAGTC | 2 cut(s) | 17, 350 |
| ScrFI | CCNGG | 2 cut(s) | 81, 375 |
| SduI | GDGCHC | 1 cut(s) | 51 |
| SetI | ASST | 5 cut(s) | 37, 121, 235, 333, 355 |
| SfaNI | GCATC | 1 cut(s) | 85 |
| Sse9I | AATT | 2 cut(s) | 302, 315 |
| StyD4I | CCNGG | 2 cut(s) | 79, 373 |
| TaaI | ACNGT | 1 cut(s) | 169 |
| TaqI | TCGA | 1 cut(s) | 20 |
| TasI | AATT | 2 cut(s) | 302, 315 |
| TscAI | CASTG | 1 cut(s) | 174 |
| TseFI | GTSAC | 2 cut(s) | 342, 355 |
| TseI | GCWGC | 3 cut(s) | 241, 308, 331 |
| Tsp45I | GTSAC | 2 cut(s) | 342, 355 |
| TspDTI | ATGAA | 1 cut(s) | 336 |
| TspRI | CASTG | 1 cut(s) | 174 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 378 |
| XmnI | GAANNNNTTC | 1 cut(s) | 213 |