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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 42 |
| AccB1I | GGYRCC | 1 cut(s) | 42 |
| AccI | GTMKAC | 2 cut(s) | 234, 262 |
| AccIII | TCCGGA | 1 cut(s) | 217 |
| AclWI | GGATC | 3 cut(s) | 209, 239, 252 |
| AfaI | GTAC | 1 cut(s) | 44 |
| AluBI | AGCT | 2 cut(s) | 65, 158 |
| AluI | AGCT | 2 cut(s) | 65, 158 |
| AlwI | GGATC | 3 cut(s) | 209, 239, 252 |
| Aor13HI | TCCGGA | 1 cut(s) | 217 |
| Asp718I | GGTACC | 1 cut(s) | 42 |
| AspS9I | GGNCC | 1 cut(s) | 144 |
| AsuC2I | CCSGG | 1 cut(s) | 183 |
| AsuHPI | GGTGA | 1 cut(s) | 89 |
| AvaII | GGWCC | 1 cut(s) | 144 |
| BamHI | GGATCC | 1 cut(s) | 244 |
| BanI | GGYRCC | 1 cut(s) | 42 |
| BbsI | GAAGAC | 1 cut(s) | 262 |
| BcnI | CCSGG | 1 cut(s) | 183 |
| Bme1390I | CCNGG | 1 cut(s) | 183 |
| Bme18I | GGWCC | 1 cut(s) | 144 |
| BmgT120I | GGNCC | 1 cut(s) | 144 |
| BmiI | GGNNCC | 2 cut(s) | 44, 246 |
| BmrFI | CCNGG | 1 cut(s) | 183 |
| BpiI | GAAGAC | 1 cut(s) | 262 |
| BpmI | CTGGAG | 1 cut(s) | 218 |
| BpuMI | CCSGG | 1 cut(s) | 183 |
| BsaWI | WCCGGW | 1 cut(s) | 217 |
| Bse1I | ACTGG | 3 cut(s) | 19, 136, 201 |
| BseAI | TCCGGA | 1 cut(s) | 217 |
| BseMII | CTCAG | 1 cut(s) | 152 |
| BseNI | ACTGG | 3 cut(s) | 19, 136, 201 |
| BsgI | GTGCAG | 1 cut(s) | 135 |
| BshNI | GGYRCC | 1 cut(s) | 42 |
| BsiSI | CCGG | 2 cut(s) | 182, 218 |
| BslFI | GGGAC | 1 cut(s) | 142 |
| BsmFI | GGGAC | 1 cut(s) | 142 |
| Bsp13I | TCCGGA | 1 cut(s) | 217 |
| Bsp143I | GATC | 3 cut(s) | 191, 214, 244 |
| BspCNI | CTCAG | 1 cut(s) | 151 |
| BspEI | TCCGGA | 1 cut(s) | 217 |
| BspLI | GGNNCC | 2 cut(s) | 44, 246 |
| BspPI | GGATC | 3 cut(s) | 209, 239, 252 |
| BspT107I | GGYRCC | 1 cut(s) | 42 |
| BsrI | ACTGG | 3 cut(s) | 19, 136, 201 |
| BssMI | GATC | 3 cut(s) | 191, 214, 244 |
| BssNAI | GTATAC | 1 cut(s) | 263 |
| Bst1107I | GTATAC | 1 cut(s) | 263 |
| Bst4CI | ACNGT | 2 cut(s) | 208, 232 |
| BstC8I | GCNNGC | 1 cut(s) | 168 |
| BstDEI | CTNAG | 1 cut(s) | 138 |
| BstKTI | GATC | 3 cut(s) | 194, 217, 247 |
| BstMBI | GATC | 3 cut(s) | 191, 214, 244 |
| BstSCI | CCNGG | 1 cut(s) | 181 |
| BstV2I | GAAGAC | 1 cut(s) | 262 |
| BstX2I | RGATCY | 1 cut(s) | 244 |
| BstYI | RGATCY | 1 cut(s) | 244 |
| BstZ17I | GTATAC | 1 cut(s) | 263 |
| BtsIMutI | CAGTG | 3 cut(s) | 12, 194, 228 |
| Cac8I | GCNNGC | 1 cut(s) | 168 |
| Cfr13I | GGNCC | 1 cut(s) | 144 |
| Csp6I | GTAC | 1 cut(s) | 43 |
| CviAII | CATG | 3 cut(s) | 82, 241, 267 |
| CviJI | RGCY | 3 cut(s) | 65, 158, 166 |
| CviKI_1 | RGCY | 3 cut(s) | 65, 158, 166 |
| CviQI | GTAC | 1 cut(s) | 43 |
| DdeI | CTNAG | 1 cut(s) | 138 |
| DpnI | GATC | 3 cut(s) | 193, 216, 246 |
| DpnII | GATC | 3 cut(s) | 191, 214, 244 |
| Eco47I | GGWCC | 1 cut(s) | 144 |
| FaeI | CATG | 3 cut(s) | 85, 244, 270 |
| FaiI | YATR | 8 cut(s) | 49, 69, 83, 126, 155, 242, 263, 268 |
| FaqI | GGGAC | 1 cut(s) | 142 |
| FatI | CATG | 3 cut(s) | 81, 240, 266 |
| FblI | GTMKAC | 2 cut(s) | 234, 262 |
| GsuI | CTGGAG | 1 cut(s) | 218 |
| HapII | CCGG | 2 cut(s) | 182, 218 |
| Hin1II | CATG | 3 cut(s) | 85, 244, 270 |
| HincII | GTYRAC | 2 cut(s) | 188, 204 |
| HindII | GTYRAC | 2 cut(s) | 188, 204 |
| HindIII | AAGCTT | 1 cut(s) | 63 |
| HpaII | CCGG | 2 cut(s) | 182, 218 |
| HphI | GGTGA | 1 cut(s) | 89 |
| Hpy166II | GTNNAC | 6 cut(s) | 79, 97, 188, 204, 235, 263 |
| Hpy188I | TCNGA | 1 cut(s) | 141 |
| Hpy188III | TCNNGA | 1 cut(s) | 218 |
| Hpy8I | GTNNAC | 6 cut(s) | 79, 97, 188, 204, 235, 263 |
| HpyAV | CCTTC | 1 cut(s) | 111 |
| HpyCH4III | ACNGT | 2 cut(s) | 208, 232 |
| HpyCH4IV | ACGT | 1 cut(s) | 259 |
| HpyCH4V | TGCA | 2 cut(s) | 116, 170 |
| HpyF3I | CTNAG | 1 cut(s) | 138 |
| HpySE526I | ACGT | 1 cut(s) | 259 |
| Hsp92II | CATG | 3 cut(s) | 85, 244, 270 |
| Kpn2I | TCCGGA | 1 cut(s) | 217 |
| KpnI | GGTACC | 1 cut(s) | 46 |
| Kzo9I | GATC | 3 cut(s) | 191, 214, 244 |
| LpnPI | CCDG | 6 cut(s) | 50, 117, 182, 195, 231, 261 |
| MaeII | ACGT | 1 cut(s) | 259 |
| MaeIII | GTNAC | 1 cut(s) | 10 |
| MalI | GATC | 3 cut(s) | 193, 216, 246 |
| MboI | GATC | 3 cut(s) | 191, 214, 244 |
| MboII | GAAGA | 2 cut(s) | 267, 295 |
| MfeI | CAATTG | 1 cut(s) | 171 |
| MflI | RGATCY | 1 cut(s) | 244 |
| MluCI | AATT | 2 cut(s) | 108, 171 |
| MmeI | TCCRAC | 1 cut(s) | 39 |
| MnlI | CCTC | 2 cut(s) | 33, 135 |
| MroI | TCCGGA | 1 cut(s) | 217 |
| MslI | CAYNNNNRTG | 1 cut(s) | 86 |
| MspI | CCGG | 2 cut(s) | 182, 218 |
| MspR9I | CCNGG | 1 cut(s) | 183 |
| MunI | CAATTG | 1 cut(s) | 171 |
| NciI | CCSGG | 1 cut(s) | 183 |
| NdeII | GATC | 3 cut(s) | 191, 214, 244 |
| NlaIII | CATG | 3 cut(s) | 85, 244, 270 |
| NlaIV | GGNNCC | 2 cut(s) | 44, 246 |
| NmuCI | GTSAC | 1 cut(s) | 10 |
| PflFI | GACNNNGTC | 1 cut(s) | 230 |
| PspN4I | GGNNCC | 2 cut(s) | 44, 246 |
| PspPI | GGNCC | 1 cut(s) | 144 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 78, 110 |
| PsuI | RGATCY | 1 cut(s) | 244 |
| PsyI | GACNNNGTC | 1 cut(s) | 230 |
| RsaI | GTAC | 1 cut(s) | 44 |
| RsaNI | GTAC | 1 cut(s) | 43 |
| RseI | CAYNNNNRTG | 1 cut(s) | 86 |
| Sau3AI | GATC | 3 cut(s) | 191, 214, 244 |
| Sau96I | GGNCC | 1 cut(s) | 144 |
| ScrFI | CCNGG | 1 cut(s) | 183 |
| SetI | ASST | 5 cut(s) | 44, 48, 67, 160, 262 |
| SinI | GGWCC | 1 cut(s) | 144 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 86 |
| Sse9I | AATT | 2 cut(s) | 108, 171 |
| StyD4I | CCNGG | 1 cut(s) | 181 |
| TaaI | ACNGT | 2 cut(s) | 208, 232 |
| TaiI | ACGT | 1 cut(s) | 262 |
| TasI | AATT | 2 cut(s) | 108, 171 |
| TscAI | CASTG | 3 cut(s) | 19, 201, 235 |
| TseFI | GTSAC | 1 cut(s) | 10 |
| Tsp45I | GTSAC | 1 cut(s) | 10 |
| TspDTI | ATGAA | 1 cut(s) | 229 |
| TspRI | CASTG | 3 cut(s) | 19, 201, 235 |
| Tth111I | GACNNNGTC | 1 cut(s) | 230 |
| VpaK11BI | GGWCC | 1 cut(s) | 144 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 273 |
| XmiI | GTMKAC | 2 cut(s) | 234, 262 |