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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 147 |
| AccB1I | GGYRCC | 2 cut(s) | 147, 304 |
| AccI | GTMKAC | 2 cut(s) | 366, 454 |
| AccII | CGCG | 1 cut(s) | 200 |
| AciI | CCGC | 2 cut(s) | 200, 518 |
| AclWI | GGATC | 3 cut(s) | 197, 210, 580 |
| AcsI | RAATTY | 1 cut(s) | 45 |
| AcuI | CTGAAG | 1 cut(s) | 61 |
| AfaI | GTAC | 2 cut(s) | 149, 264 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 157 |
| AgsI | TTSAA | 3 cut(s) | 15, 240, 660 |
| AluBI | AGCT | 1 cut(s) | 535 |
| AluI | AGCT | 1 cut(s) | 535 |
| Alw26I | GTCTC | 1 cut(s) | 223 |
| AlwI | GGATC | 3 cut(s) | 197, 210, 580 |
| Ama87I | CYCGRG | 2 cut(s) | 60, 398 |
| ApoI | RAATTY | 1 cut(s) | 45 |
| Asp718I | GGTACC | 1 cut(s) | 147 |
| AspLEI | GCGC | 1 cut(s) | 122 |
| AspS9I | GGNCC | 1 cut(s) | 160 |
| AvaI | CYCGRG | 2 cut(s) | 60, 398 |
| AvaII | GGWCC | 1 cut(s) | 160 |
| BamHI | GGATCC | 1 cut(s) | 202 |
| BanI | GGYRCC | 2 cut(s) | 147, 304 |
| BccI | CCATC | 4 cut(s) | 19, 94, 400, 471 |
| BcoDI | GTCTC | 1 cut(s) | 223 |
| BfaI | CTAG | 1 cut(s) | 35 |
| BlpI | GCTNAGC | 1 cut(s) | 116 |
| Bme18I | GGWCC | 1 cut(s) | 160 |
| BmeT110I | CYCGRG | 2 cut(s) | 60, 398 |
| BmgT120I | GGNCC | 1 cut(s) | 160 |
| BmiI | GGNNCC | 3 cut(s) | 149, 204, 306 |
| BmrI | ACTGGG | 1 cut(s) | 312 |
| BmsI | GCATC | 3 cut(s) | 261, 677, 697 |
| BmuI | ACTGGG | 1 cut(s) | 312 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 116 |
| BpuEI | CTTGAG | 1 cut(s) | 185 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 157 |
| Bse1I | ACTGG | 1 cut(s) | 318 |
| Bse3DI | GCAATG | 1 cut(s) | 116 |
| BseGI | GGATG | 3 cut(s) | 276, 336, 411 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BseMI | GCAATG | 1 cut(s) | 116 |
| BseMII | CTCAG | 1 cut(s) | 130 |
| BseNI | ACTGG | 1 cut(s) | 318 |
| BsgI | GTGCAG | 1 cut(s) | 192 |
| Bsh1236I | CGCG | 1 cut(s) | 200 |
| BshNI | GGYRCC | 2 cut(s) | 147, 304 |
| BsiHKCI | CYCGRG | 2 cut(s) | 60, 398 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BsmAI | GTCTC | 1 cut(s) | 223 |
| BsmBI | CGTCTC | 1 cut(s) | 223 |
| BsoBI | CYCGRG | 2 cut(s) | 60, 398 |
| Bsp143I | GATC | 3 cut(s) | 202, 289, 572 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 116 |
| BspACI | CCGC | 2 cut(s) | 200, 518 |
| BspCNI | CTCAG | 1 cut(s) | 129 |
| BspFNI | CGCG | 1 cut(s) | 200 |
| BspLI | GGNNCC | 3 cut(s) | 149, 204, 306 |
| BspPI | GGATC | 3 cut(s) | 197, 210, 580 |
| BspQI | GCTCTTC | 1 cut(s) | 525 |
| BspT107I | GGYRCC | 2 cut(s) | 147, 304 |
| BsrDI | GCAATG | 1 cut(s) | 116 |
| BsrI | ACTGG | 1 cut(s) | 318 |
| BssMI | GATC | 3 cut(s) | 202, 289, 572 |
| Bst4CI | ACNGT | 1 cut(s) | 415 |
| Bst6I | CTCTTC | 1 cut(s) | 525 |
| BstDEI | CTNAG | 1 cut(s) | 116 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 155 |
| BstF5I | GGATG | 3 cut(s) | 276, 336, 411 |
| BstFNI | CGCG | 1 cut(s) | 200 |
| BstHHI | GCGC | 1 cut(s) | 122 |
| BstKTI | GATC | 3 cut(s) | 205, 292, 575 |
| BstMAI | GTCTC | 1 cut(s) | 223 |
| BstMBI | GATC | 3 cut(s) | 202, 289, 572 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 126, 206 |
| BstUI | CGCG | 1 cut(s) | 200 |
| BstX2I | RGATCY | 2 cut(s) | 202, 572 |
| BstYI | RGATCY | 2 cut(s) | 202, 572 |
| BtsCI | GGATG | 3 cut(s) | 276, 336, 411 |
| BtsIMutI | CAGTG | 2 cut(s) | 20, 325 |
| CfoI | GCGC | 1 cut(s) | 122 |
| Cfr13I | GGNCC | 1 cut(s) | 160 |
| Csp6I | GTAC | 2 cut(s) | 148, 263 |
| CviAII | CATG | 4 cut(s) | 142, 178, 458, 561 |
| CviJI | RGCY | 4 cut(s) | 41, 115, 137, 535 |
| CviKI_1 | RGCY | 4 cut(s) | 41, 115, 137, 535 |
| CviQI | GTAC | 2 cut(s) | 148, 263 |
| DdeI | CTNAG | 1 cut(s) | 116 |
| DpnI | GATC | 3 cut(s) | 204, 291, 574 |
| DpnII | GATC | 3 cut(s) | 202, 289, 572 |
| Eam1104I | CTCTTC | 1 cut(s) | 525 |
| EarI | CTCTTC | 1 cut(s) | 525 |
| Eco47I | GGWCC | 1 cut(s) | 160 |
| Eco57I | CTGAAG | 1 cut(s) | 61 |
| Eco88I | CYCGRG | 2 cut(s) | 60, 398 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 155 |
| EcoO109I | RGGNCCY | 1 cut(s) | 160 |
| Esp3I | CGTCTC | 1 cut(s) | 223 |
| FaeI | CATG | 4 cut(s) | 145, 181, 461, 564 |
| FatI | CATG | 4 cut(s) | 141, 177, 457, 560 |
| FblI | GTMKAC | 2 cut(s) | 366, 454 |
| FokI | GGATG | 3 cut(s) | 283, 343, 418 |
| FspBI | CTAG | 1 cut(s) | 35 |
| GlaI | GCGC | 1 cut(s) | 121 |
| HhaI | GCGC | 1 cut(s) | 122 |
| Hin1II | CATG | 4 cut(s) | 145, 181, 461, 564 |
| Hin6I | GCGC | 1 cut(s) | 120 |
| HinP1I | GCGC | 1 cut(s) | 120 |
| HincII | GTYRAC | 2 cut(s) | 336, 504 |
| HindII | GTYRAC | 2 cut(s) | 336, 504 |
| HinfI | GANTC | 3 cut(s) | 236, 377, 656 |
| Hpy166II | GTNNAC | 7 cut(s) | 253, 336, 367, 376, 418, 455, 504 |
| Hpy188I | TCNGA | 7 cut(s) | 53, 80, 175, 235, 289, 673, 693 |
| Hpy188III | TCNNGA | 2 cut(s) | 35, 62 |
| Hpy8I | GTNNAC | 7 cut(s) | 253, 336, 367, 376, 418, 455, 504 |
| HpyAV | CCTTC | 2 cut(s) | 539, 624 |
| HpyCH4III | ACNGT | 1 cut(s) | 415 |
| HpyCH4V | TGCA | 5 cut(s) | 109, 129, 209, 274, 425 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 126, 206 |
| HpyF3I | CTNAG | 1 cut(s) | 116 |
| Hsp92II | CATG | 4 cut(s) | 145, 181, 461, 564 |
| HspAI | GCGC | 1 cut(s) | 120 |
| KpnI | GGTACC | 1 cut(s) | 151 |
| Kzo9I | GATC | 3 cut(s) | 202, 289, 572 |
| LguI | GCTCTTC | 1 cut(s) | 525 |
| LpnPI | CCDG | 5 cut(s) | 219, 331, 521, 588, 669 |
| LweI | GCATC | 3 cut(s) | 261, 677, 697 |
| MaeI | CTAG | 1 cut(s) | 35 |
| MaeIII | GTNAC | 1 cut(s) | 320 |
| MalI | GATC | 3 cut(s) | 204, 291, 574 |
| MboI | GATC | 3 cut(s) | 202, 289, 572 |
| MboII | GAAGA | 5 cut(s) | 67, 362, 533, 536, 542 |
| MfeI | CAATTG | 1 cut(s) | 660 |
| MflI | RGATCY | 2 cut(s) | 202, 572 |
| MluCI | AATT | 8 cut(s) | 10, 45, 256, 431, 444, 637, 648, 660 |
| MlyI | GAGTC | 1 cut(s) | 371 |
| MmeI | TCCRAC | 1 cut(s) | 550 |
| MnlI | CCTC | 6 cut(s) | 31, 69, 138, 151, 658, 728 |
| MseI | TTAA | 2 cut(s) | 438, 651 |
| MslI | CAYNNNNRTG | 1 cut(s) | 475 |
| MunI | CAATTG | 1 cut(s) | 660 |
| MvnI | CGCG | 1 cut(s) | 200 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 126, 206 |
| NdeII | GATC | 3 cut(s) | 202, 289, 572 |
| NlaIII | CATG | 4 cut(s) | 145, 181, 461, 564 |
| NlaIV | GGNNCC | 3 cut(s) | 149, 204, 306 |
| NmuCI | GTSAC | 1 cut(s) | 320 |
| PaeR7I | CTCGAG | 1 cut(s) | 60 |
| PciSI | GCTCTTC | 1 cut(s) | 525 |
| PfeI | GAWTC | 2 cut(s) | 236, 656 |
| PleI | GAGTC | 1 cut(s) | 371 |
| PpsI | GAGTC | 1 cut(s) | 371 |
| PpuMI | RGGWCCY | 1 cut(s) | 160 |
| Psp5II | RGGWCCY | 1 cut(s) | 160 |
| PspN4I | GGNNCC | 3 cut(s) | 149, 204, 306 |
| PspPI | GGNCC | 1 cut(s) | 160 |
| PspPPI | RGGWCCY | 1 cut(s) | 160 |
| PsuI | RGATCY | 2 cut(s) | 202, 572 |
| RsaI | GTAC | 2 cut(s) | 149, 264 |
| RsaNI | GTAC | 2 cut(s) | 148, 263 |
| RseI | CAYNNNNRTG | 1 cut(s) | 475 |
| SapI | GCTCTTC | 1 cut(s) | 525 |
| SaqAI | TTAA | 2 cut(s) | 438, 651 |
| Sau3AI | GATC | 3 cut(s) | 202, 289, 572 |
| Sau96I | GGNCC | 1 cut(s) | 160 |
| SchI | GAGTC | 1 cut(s) | 371 |
| SetI | ASST | 4 cut(s) | 149, 153, 162, 537 |
| SfaNI | GCATC | 3 cut(s) | 261, 677, 697 |
| Sfr274I | CTCGAG | 1 cut(s) | 60 |
| SinI | GGWCC | 1 cut(s) | 160 |
| SlaI | CTCGAG | 1 cut(s) | 60 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 475 |
| SmlI | CTYRAG | 2 cut(s) | 60, 164 |
| SmoI | CTYRAG | 2 cut(s) | 60, 164 |
| Sse9I | AATT | 8 cut(s) | 10, 45, 256, 431, 444, 637, 648, 660 |
| SsiI | CCGC | 2 cut(s) | 200, 518 |
| SspI | AATATT | 1 cut(s) | 88 |
| SspMI | CTAG | 1 cut(s) | 35 |
| TaaI | ACNGT | 1 cut(s) | 415 |
| TaqI | TCGA | 1 cut(s) | 61 |
| TasI | AATT | 8 cut(s) | 10, 45, 256, 431, 444, 637, 648, 660 |
| TatI | WGTACW | 1 cut(s) | 262 |
| TfiI | GAWTC | 2 cut(s) | 236, 656 |
| Tru1I | TTAA | 2 cut(s) | 438, 651 |
| Tru9I | TTAA | 2 cut(s) | 438, 651 |
| TscAI | CASTG | 2 cut(s) | 27, 325 |
| TseFI | GTSAC | 1 cut(s) | 320 |
| Tsp45I | GTSAC | 1 cut(s) | 320 |
| TspDTI | ATGAA | 3 cut(s) | 363, 543, 558 |
| TspGWI | ACGGA | 1 cut(s) | 283 |
| TspRI | CASTG | 2 cut(s) | 27, 325 |
| VpaK11BI | GGWCC | 1 cut(s) | 160 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 155 |
| XapI | RAATTY | 1 cut(s) | 45 |
| XbaI | TCTAGA | 1 cut(s) | 34 |
| XhoI | CTCGAG | 1 cut(s) | 60 |
| XmiI | GTMKAC | 2 cut(s) | 366, 454 |
| XspI | CTAG | 1 cut(s) | 35 |