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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 369 |
| AccB1I | GGYRCC | 1 cut(s) | 263 |
| AccI | GTMKAC | 2 cut(s) | 339, 426 |
| AccII | CGCG | 2 cut(s) | 296, 404 |
| AciI | CCGC | 4 cut(s) | 186, 296, 404, 476 |
| AclWI | GGATC | 2 cut(s) | 89, 265 |
| AcuI | CTGAAG | 1 cut(s) | 73 |
| AfaI | GTAC | 2 cut(s) | 136, 236 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 30, 349 |
| AluBI | AGCT | 1 cut(s) | 157 |
| AluI | AGCT | 1 cut(s) | 157 |
| AlwI | GGATC | 2 cut(s) | 89, 265 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 84 |
| Ama87I | CYCGRG | 1 cut(s) | 7 |
| ApeKI | GCWGC | 2 cut(s) | 20, 305 |
| AspS9I | GGNCC | 1 cut(s) | 146 |
| AsuC2I | CCSGG | 1 cut(s) | 344 |
| AvaI | CYCGRG | 1 cut(s) | 7 |
| AvaII | GGWCC | 1 cut(s) | 146 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 226, 259 |
| BanI | GGYRCC | 1 cut(s) | 263 |
| BauI | CACGAG | 1 cut(s) | 25 |
| BbsI | GAAGAC | 1 cut(s) | 374 |
| BbvCI | CCTCAGC | 1 cut(s) | 158 |
| BbvI | GCAGC | 2 cut(s) | 7, 317 |
| BccI | CCATC | 3 cut(s) | 65, 347, 453 |
| BceAI | ACGGC | 2 cut(s) | 33, 374 |
| BcnI | CCSGG | 1 cut(s) | 344 |
| BfaI | CTAG | 1 cut(s) | 248 |
| BisI | GCNGC | 2 cut(s) | 21, 306 |
| BlsI | GCNGC | 2 cut(s) | 22, 307 |
| BmcAI | AGTACT | 1 cut(s) | 136 |
| Bme1390I | CCNGG | 1 cut(s) | 344 |
| Bme18I | GGWCC | 1 cut(s) | 146 |
| BmeT110I | CYCGRG | 1 cut(s) | 7 |
| BmgT120I | GGNCC | 1 cut(s) | 146 |
| BmiI | GGNNCC | 1 cut(s) | 265 |
| BmrFI | CCNGG | 1 cut(s) | 344 |
| BmrI | ACTGGG | 1 cut(s) | 439 |
| BmuI | ACTGGG | 1 cut(s) | 439 |
| BoxI | GACNNNNGTC | 1 cut(s) | 460 |
| BpiI | GAAGAC | 1 cut(s) | 374 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 121, 153 |
| Bpu10I | CCTNAGC | 2 cut(s) | 158, 348 |
| BpuMI | CCSGG | 1 cut(s) | 344 |
| BsaJI | CCNNGG | 1 cut(s) | 6 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 30, 349 |
| Bse1I | ACTGG | 1 cut(s) | 434 |
| BseDI | CCNNGG | 1 cut(s) | 6 |
| BseGI | GGATG | 2 cut(s) | 57, 358 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 30, 349 |
| BseMII | CTCAG | 1 cut(s) | 149 |
| BseNI | ACTGG | 1 cut(s) | 434 |
| BseRI | GAGGAG | 1 cut(s) | 145 |
| BseXI | GCAGC | 2 cut(s) | 7, 317 |
| BsgI | GTGCAG | 1 cut(s) | 450 |
| Bsh1236I | CGCG | 2 cut(s) | 296, 404 |
| Bsh1285I | CGRYCG | 1 cut(s) | 343 |
| BshNI | GGYRCC | 1 cut(s) | 263 |
| BsiEI | CGRYCG | 1 cut(s) | 343 |
| BsiHKCI | CYCGRG | 1 cut(s) | 7 |
| BsiSI | CCGG | 1 cut(s) | 343 |
| BslFI | GGGAC | 1 cut(s) | 468 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 30, 349 |
| BsmFI | GGGAC | 1 cut(s) | 468 |
| BsoBI | CYCGRG | 1 cut(s) | 7 |
| Bsp143I | GATC | 3 cut(s) | 81, 177, 257 |
| BspACI | CCGC | 4 cut(s) | 186, 296, 404, 476 |
| BspCNI | CTCAG | 1 cut(s) | 150 |
| BspFNI | CGCG | 2 cut(s) | 296, 404 |
| BspLI | GGNNCC | 1 cut(s) | 265 |
| BspPI | GGATC | 2 cut(s) | 89, 265 |
| BspT107I | GGYRCC | 1 cut(s) | 263 |
| BsrI | ACTGG | 1 cut(s) | 434 |
| BssECI | CCNNGG | 1 cut(s) | 6 |
| BssMI | GATC | 3 cut(s) | 81, 177, 257 |
| BssSI | CACGAG | 1 cut(s) | 25 |
| Bst2BI | CACGAG | 1 cut(s) | 25 |
| Bst4CI | ACNGT | 1 cut(s) | 239 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 84 |
| BstDEI | CTNAG | 2 cut(s) | 158, 348 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 28 |
| BstF5I | GGATG | 2 cut(s) | 57, 358 |
| BstFNI | CGCG | 2 cut(s) | 296, 404 |
| BstKTI | GATC | 3 cut(s) | 84, 180, 260 |
| BstMBI | GATC | 3 cut(s) | 81, 177, 257 |
| BstMCI | CGRYCG | 1 cut(s) | 343 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 84, 302, 410, 473, 482 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 460 |
| BstSCI | CCNGG | 1 cut(s) | 342 |
| BstUI | CGCG | 2 cut(s) | 296, 404 |
| BstV1I | GCAGC | 2 cut(s) | 7, 317 |
| BstV2I | GAAGAC | 1 cut(s) | 374 |
| BstX2I | RGATCY | 1 cut(s) | 81 |
| BstYI | RGATCY | 1 cut(s) | 81 |
| BtsCI | GGATG | 2 cut(s) | 57, 358 |
| BtsI | GCAGTG | 1 cut(s) | 177 |
| BtsIMutI | CAGTG | 2 cut(s) | 177, 244 |
| CaiI | CAGNNNCTG | 1 cut(s) | 84 |
| Cfr13I | GGNCC | 1 cut(s) | 146 |
| Csp6I | GTAC | 2 cut(s) | 135, 235 |
| CviJI | RGCY | 7 cut(s) | 20, 157, 247, 284, 308, 347, 413 |
| CviKI_1 | RGCY | 7 cut(s) | 20, 157, 247, 284, 308, 347, 413 |
| CviQI | GTAC | 2 cut(s) | 135, 235 |
| DdeI | CTNAG | 2 cut(s) | 158, 348 |
| DpnI | GATC | 3 cut(s) | 83, 179, 259 |
| DpnII | GATC | 3 cut(s) | 81, 177, 257 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 369 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 369 |
| EciI | GGCGGA | 1 cut(s) | 491 |
| Eco47I | GGWCC | 1 cut(s) | 146 |
| Eco57I | CTGAAG | 1 cut(s) | 73 |
| Eco88I | CYCGRG | 1 cut(s) | 7 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 28 |
| FaiI | YATR | 4 cut(s) | 168, 222, 231, 483 |
| FaqI | GGGAC | 1 cut(s) | 468 |
| FauI | CCCGC | 2 cut(s) | 289, 397 |
| FblI | GTMKAC | 2 cut(s) | 339, 426 |
| Fnu4HI | GCNGC | 2 cut(s) | 21, 306 |
| FokI | GGATG | 2 cut(s) | 44, 365 |
| Fsp4HI | GCNGC | 2 cut(s) | 21, 306 |
| FspBI | CTAG | 1 cut(s) | 248 |
| GluI | GCNGC | 2 cut(s) | 21, 306 |
| HapII | CCGG | 1 cut(s) | 343 |
| HincII | GTYRAC | 1 cut(s) | 340 |
| HindII | GTYRAC | 1 cut(s) | 340 |
| HinfI | GANTC | 5 cut(s) | 73, 291, 336, 399, 443 |
| HpaII | CCGG | 1 cut(s) | 343 |
| Hpy166II | GTNNAC | 4 cut(s) | 146, 340, 362, 427 |
| Hpy188I | TCNGA | 1 cut(s) | 92 |
| Hpy188III | TCNNGA | 2 cut(s) | 9, 255 |
| Hpy8I | GTNNAC | 4 cut(s) | 146, 340, 362, 427 |
| HpyAV | CCTTC | 1 cut(s) | 209 |
| HpyCH4III | ACNGT | 1 cut(s) | 239 |
| HpyCH4IV | ACGT | 1 cut(s) | 420 |
| HpyCH4V | TGCA | 2 cut(s) | 170, 467 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 84, 302, 410, 473, 482 |
| HpyF3I | CTNAG | 2 cut(s) | 158, 348 |
| HpySE526I | ACGT | 1 cut(s) | 420 |
| Kzo9I | GATC | 3 cut(s) | 81, 177, 257 |
| LpnPI | CCDG | 8 cut(s) | 64, 125, 166, 240, 246, 356, 415, 432 |
| Lsp1109I | GCAGC | 2 cut(s) | 7, 317 |
| MaeI | CTAG | 1 cut(s) | 248 |
| MaeII | ACGT | 1 cut(s) | 420 |
| MalI | GATC | 3 cut(s) | 83, 179, 259 |
| MboI | GATC | 3 cut(s) | 81, 177, 257 |
| MboII | GAAGA | 3 cut(s) | 214, 217, 374 |
| MflI | RGATCY | 1 cut(s) | 81 |
| MlyI | GAGTC | 3 cut(s) | 300, 345, 408 |
| MspI | CCGG | 1 cut(s) | 343 |
| MspR9I | CCNGG | 1 cut(s) | 344 |
| MvnI | CGCG | 2 cut(s) | 296, 404 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 84, 302, 410, 473, 482 |
| NciI | CCSGG | 1 cut(s) | 344 |
| NdeII | GATC | 3 cut(s) | 81, 177, 257 |
| NlaIV | GGNNCC | 1 cut(s) | 265 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 23 |
| PfeI | GAWTC | 2 cut(s) | 73, 443 |
| PkrI | GCNGC | 2 cut(s) | 22, 307 |
| PleI | GAGTC | 3 cut(s) | 299, 344, 407 |
| PpsI | GAGTC | 3 cut(s) | 299, 344, 407 |
| PshAI | GACNNNNGTC | 1 cut(s) | 460 |
| PspN4I | GGNNCC | 1 cut(s) | 265 |
| PspPI | GGNCC | 1 cut(s) | 146 |
| PstNI | CAGNNNCTG | 1 cut(s) | 84 |
| PsuI | RGATCY | 1 cut(s) | 81 |
| RsaI | GTAC | 2 cut(s) | 136, 236 |
| RsaNI | GTAC | 2 cut(s) | 135, 235 |
| SalI | GTCGAC | 1 cut(s) | 338 |
| SatI | GCNGC | 2 cut(s) | 21, 306 |
| Sau3AI | GATC | 3 cut(s) | 81, 177, 257 |
| Sau96I | GGNCC | 1 cut(s) | 146 |
| ScaI | AGTACT | 1 cut(s) | 136 |
| SchI | GAGTC | 3 cut(s) | 300, 345, 408 |
| ScrFI | CCNGG | 1 cut(s) | 344 |
| SetI | ASST | 6 cut(s) | 47, 151, 159, 253, 423, 451 |
| SinI | GGWCC | 1 cut(s) | 146 |
| SsiI | CCGC | 4 cut(s) | 186, 296, 404, 476 |
| SspMI | CTAG | 1 cut(s) | 248 |
| StyD4I | CCNGG | 1 cut(s) | 342 |
| TaaI | ACNGT | 1 cut(s) | 239 |
| TaiI | ACGT | 1 cut(s) | 423 |
| TaqI | TCGA | 2 cut(s) | 71, 339 |
| TatI | WGTACW | 1 cut(s) | 134 |
| TfiI | GAWTC | 2 cut(s) | 73, 443 |
| TscAI | CASTG | 2 cut(s) | 177, 244 |
| TseI | GCWGC | 2 cut(s) | 20, 305 |
| TspRI | CASTG | 2 cut(s) | 177, 244 |
| VpaK11BI | GGWCC | 1 cut(s) | 146 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 28 |
| XmiI | GTMKAC | 2 cut(s) | 339, 426 |
| XspI | CTAG | 1 cut(s) | 248 |
| ZrmI | AGTACT | 1 cut(s) | 136 |