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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 568 |
| AccII | CGCG | 1 cut(s) | 622 |
| AciI | CCGC | 2 cut(s) | 5, 622 |
| AclWI | GGATC | 1 cut(s) | 16 |
| AcsI | RAATTY | 1 cut(s) | 590 |
| AcuI | CTGAAG | 1 cut(s) | 80 |
| AfaI | GTAC | 1 cut(s) | 423 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 568 |
| AflII | CTTAAG | 1 cut(s) | 190 |
| AflIII | ACRYGT | 1 cut(s) | 376 |
| AgsI | TTSAA | 4 cut(s) | 177, 217, 457, 599 |
| AjnI | CCWGG | 2 cut(s) | 334, 368 |
| AluBI | AGCT | 4 cut(s) | 189, 281, 434, 688 |
| AluI | AGCT | 4 cut(s) | 189, 281, 434, 688 |
| AlwI | GGATC | 1 cut(s) | 16 |
| AoxI | GGCC | 1 cut(s) | 318 |
| ApoI | RAATTY | 1 cut(s) | 590 |
| AspLEI | GCGC | 1 cut(s) | 622 |
| AspS9I | GGNCC | 2 cut(s) | 318, 558 |
| AsuC2I | CCSGG | 1 cut(s) | 463 |
| AvaII | GGWCC | 1 cut(s) | 558 |
| BbvCI | CCTCAGC | 1 cut(s) | 351 |
| BceAI | ACGGC | 1 cut(s) | 363 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 238, 272 |
| BciT130I | CCWGG | 2 cut(s) | 336, 370 |
| BcnI | CCSGG | 1 cut(s) | 463 |
| BfrI | CTTAAG | 1 cut(s) | 190 |
| BisI | GCNGC | 1 cut(s) | 623 |
| BlsI | GCNGC | 1 cut(s) | 624 |
| Bme1390I | CCNGG | 3 cut(s) | 336, 370, 463 |
| Bme18I | GGWCC | 1 cut(s) | 558 |
| BmgT120I | GGNCC | 2 cut(s) | 318, 558 |
| BmiI | GGNNCC | 1 cut(s) | 560 |
| BmrFI | CCNGG | 3 cut(s) | 336, 370, 463 |
| BmsI | GCATC | 2 cut(s) | 94, 116 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 195, 227 |
| BpmI | CTGGAG | 1 cut(s) | 507 |
| Bpu10I | CCTNAGC | 1 cut(s) | 351 |
| BpuMI | CCSGG | 1 cut(s) | 463 |
| BsaAI | YACGTR | 1 cut(s) | 377 |
| BsaBI | GATNNNNATC | 1 cut(s) | 13 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 443, 473 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 568 |
| Bse1I | ACTGG | 1 cut(s) | 429 |
| Bse8I | GATNNNNATC | 1 cut(s) | 13 |
| BseBI | CCWGG | 2 cut(s) | 336, 370 |
| BseGI | GGATG | 4 cut(s) | 107, 151, 344, 502 |
| BseJI | GATNNNNATC | 1 cut(s) | 13 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 568 |
| BseMII | CTCAG | 1 cut(s) | 342 |
| BseNI | ACTGG | 1 cut(s) | 429 |
| BseRI | GAGGAG | 1 cut(s) | 368 |
| BsgI | GTGCAG | 1 cut(s) | 401 |
| Bsh1236I | CGCG | 1 cut(s) | 622 |
| BshFI | GGCC | 1 cut(s) | 320 |
| BsiSI | CCGG | 1 cut(s) | 463 |
| BslFI | GGGAC | 5 cut(s) | 63, 151, 241, 445, 640 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 568 |
| BsmFI | GGGAC | 5 cut(s) | 63, 151, 241, 445, 640 |
| BsnI | GGCC | 1 cut(s) | 320 |
| Bsp143I | GATC | 2 cut(s) | 8, 550 |
| BspACI | CCGC | 2 cut(s) | 5, 622 |
| BspANI | GGCC | 1 cut(s) | 320 |
| BspCNI | CTCAG | 1 cut(s) | 343 |
| BspFNI | CGCG | 1 cut(s) | 622 |
| BspHI | TCATGA | 1 cut(s) | 403 |
| BspLI | GGNNCC | 1 cut(s) | 560 |
| BspPI | GGATC | 1 cut(s) | 16 |
| BspQI | GCTCTTC | 1 cut(s) | 678 |
| BspTI | CTTAAG | 1 cut(s) | 190 |
| BsrI | ACTGG | 1 cut(s) | 429 |
| BssMI | GATC | 2 cut(s) | 8, 550 |
| Bst2UI | CCWGG | 2 cut(s) | 336, 370 |
| Bst4CI | ACNGT | 1 cut(s) | 157 |
| Bst6I | CTCTTC | 2 cut(s) | 218, 678 |
| BstAFI | CTTAAG | 1 cut(s) | 190 |
| BstBAI | YACGTR | 1 cut(s) | 377 |
| BstC8I | GCNNGC | 2 cut(s) | 283, 322 |
| BstDEI | CTNAG | 3 cut(s) | 69, 277, 351 |
| BstF5I | GGATG | 4 cut(s) | 107, 151, 344, 502 |
| BstFNI | CGCG | 1 cut(s) | 622 |
| BstHHI | GCGC | 1 cut(s) | 622 |
| BstKTI | GATC | 2 cut(s) | 11, 553 |
| BstMBI | GATC | 2 cut(s) | 8, 550 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 472 |
| BstNI | CCWGG | 2 cut(s) | 336, 370 |
| BstSCI | CCNGG | 3 cut(s) | 334, 368, 461 |
| BstUI | CGCG | 1 cut(s) | 622 |
| BsuRI | GGCC | 1 cut(s) | 320 |
| BtsCI | GGATG | 4 cut(s) | 107, 151, 344, 502 |
| Cac8I | GCNNGC | 2 cut(s) | 283, 322 |
| CciI | TCATGA | 1 cut(s) | 403 |
| CfoI | GCGC | 1 cut(s) | 622 |
| Cfr13I | GGNCC | 2 cut(s) | 318, 558 |
| CsiI | ACCWGGT | 1 cut(s) | 368 |
| Csp6I | GTAC | 1 cut(s) | 422 |
| CviAII | CATG | 2 cut(s) | 234, 404 |
| CviJI | RGCY | 8 cut(s) | 189, 281, 320, 350, 434, 466, 572, 688 |
| CviKI_1 | RGCY | 8 cut(s) | 189, 281, 320, 350, 434, 466, 572, 688 |
| CviQI | GTAC | 1 cut(s) | 422 |
| DdeI | CTNAG | 3 cut(s) | 69, 277, 351 |
| DpnI | GATC | 2 cut(s) | 10, 552 |
| DpnII | GATC | 2 cut(s) | 8, 550 |
| Eam1104I | CTCTTC | 2 cut(s) | 218, 678 |
| EarI | CTCTTC | 2 cut(s) | 218, 678 |
| Eco47I | GGWCC | 1 cut(s) | 558 |
| Eco57I | CTGAAG | 1 cut(s) | 80 |
| EcoRII | CCWGG | 2 cut(s) | 334, 368 |
| EcoT22I | ATGCAT | 1 cut(s) | 109 |
| FaeI | CATG | 2 cut(s) | 237, 407 |
| FaiI | YATR | 9 cut(s) | 235, 265, 267, 302, 332, 405, 485, 534, 669 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 295, 327 |
| FaqI | GGGAC | 5 cut(s) | 63, 151, 241, 445, 640 |
| FatI | CATG | 2 cut(s) | 233, 403 |
| Fnu4HI | GCNGC | 1 cut(s) | 623 |
| FokI | GGATG | 4 cut(s) | 94, 158, 351, 509 |
| Fsp4HI | GCNGC | 1 cut(s) | 623 |
| GlaI | GCGC | 1 cut(s) | 621 |
| GluI | GCNGC | 1 cut(s) | 623 |
| GsuI | CTGGAG | 1 cut(s) | 507 |
| HaeIII | GGCC | 1 cut(s) | 320 |
| HapII | CCGG | 1 cut(s) | 463 |
| HhaI | GCGC | 1 cut(s) | 622 |
| Hin1II | CATG | 2 cut(s) | 237, 407 |
| Hin6I | GCGC | 1 cut(s) | 620 |
| HinP1I | GCGC | 1 cut(s) | 620 |
| HinfI | GANTC | 4 cut(s) | 229, 428, 506, 537 |
| HpaII | CCGG | 1 cut(s) | 463 |
| Hpy188I | TCNGA | 1 cut(s) | 118 |
| Hpy188III | TCNNGA | 3 cut(s) | 404, 524, 596 |
| HpyAV | CCTTC | 2 cut(s) | 235, 244 |
| HpyCH4III | ACNGT | 1 cut(s) | 157 |
| HpyCH4IV | ACGT | 3 cut(s) | 88, 219, 376 |
| HpyCH4V | TGCA | 4 cut(s) | 107, 259, 382, 614 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 472 |
| HpyF3I | CTNAG | 3 cut(s) | 69, 277, 351 |
| HpySE526I | ACGT | 3 cut(s) | 88, 219, 376 |
| Hsp92II | CATG | 2 cut(s) | 237, 407 |
| HspAI | GCGC | 1 cut(s) | 620 |
| Kzo9I | GATC | 2 cut(s) | 8, 550 |
| LguI | GCTCTTC | 1 cut(s) | 678 |
| LmnI | GCTCC | 1 cut(s) | 180 |
| LweI | GCATC | 2 cut(s) | 94, 116 |
| MabI | ACCWGGT | 1 cut(s) | 368 |
| MaeII | ACGT | 3 cut(s) | 88, 219, 376 |
| MaeIII | GTNAC | 3 cut(s) | 84, 343, 372 |
| MalI | GATC | 2 cut(s) | 10, 552 |
| MboI | GATC | 2 cut(s) | 8, 550 |
| MboII | GAAGA | 6 cut(s) | 43, 73, 161, 205, 643, 695 |
| MluCI | AATT | 4 cut(s) | 417, 563, 590, 599 |
| MlyI | GAGTC | 1 cut(s) | 223 |
| MnlI | CCTC | 7 cut(s) | 31, 309, 346, 405, 441, 531, 673 |
| Mph1103I | ATGCAT | 1 cut(s) | 109 |
| MseI | TTAA | 3 cut(s) | 191, 512, 697 |
| MslI | CAYNNNNRTG | 1 cut(s) | 442 |
| MspCI | CTTAAG | 1 cut(s) | 190 |
| MspI | CCGG | 1 cut(s) | 463 |
| MspR9I | CCNGG | 3 cut(s) | 336, 370, 463 |
| MvaI | CCWGG | 2 cut(s) | 336, 370 |
| MvnI | CGCG | 1 cut(s) | 622 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 472 |
| NciI | CCSGG | 1 cut(s) | 463 |
| NdeII | GATC | 2 cut(s) | 8, 550 |
| NlaIII | CATG | 2 cut(s) | 237, 407 |
| NlaIV | GGNNCC | 1 cut(s) | 560 |
| NmuCI | GTSAC | 2 cut(s) | 84, 343 |
| NsiI | ATGCAT | 1 cut(s) | 109 |
| PagI | TCATGA | 1 cut(s) | 403 |
| PciSI | GCTCTTC | 1 cut(s) | 678 |
| PfeI | GAWTC | 3 cut(s) | 428, 506, 537 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 568 |
| PkrI | GCNGC | 1 cut(s) | 624 |
| PleI | GAGTC | 1 cut(s) | 223 |
| PpsI | GAGTC | 1 cut(s) | 223 |
| Ppu21I | YACGTR | 1 cut(s) | 377 |
| Psp6I | CCWGG | 2 cut(s) | 334, 368 |
| PspGI | CCWGG | 2 cut(s) | 334, 368 |
| PspN4I | GGNNCC | 1 cut(s) | 560 |
| PspPI | GGNCC | 2 cut(s) | 318, 558 |
| RsaI | GTAC | 1 cut(s) | 423 |
| RsaNI | GTAC | 1 cut(s) | 422 |
| RseI | CAYNNNNRTG | 1 cut(s) | 442 |
| SapI | GCTCTTC | 1 cut(s) | 678 |
| SaqAI | TTAA | 3 cut(s) | 191, 512, 697 |
| SatI | GCNGC | 1 cut(s) | 623 |
| Sau3AI | GATC | 2 cut(s) | 8, 550 |
| Sau96I | GGNCC | 2 cut(s) | 318, 558 |
| SchI | GAGTC | 1 cut(s) | 223 |
| ScrFI | CCNGG | 3 cut(s) | 336, 370, 463 |
| SexAI | ACCWGGT | 1 cut(s) | 368 |
| SfaNI | GCATC | 2 cut(s) | 94, 116 |
| SinI | GGWCC | 1 cut(s) | 558 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 442 |
| SmlI | CTYRAG | 1 cut(s) | 190 |
| SmoI | CTYRAG | 1 cut(s) | 190 |
| Sse9I | AATT | 4 cut(s) | 417, 563, 590, 599 |
| SsiI | CCGC | 2 cut(s) | 5, 622 |
| StyD4I | CCNGG | 3 cut(s) | 334, 368, 461 |
| TaaI | ACNGT | 1 cut(s) | 157 |
| TaiI | ACGT | 3 cut(s) | 91, 222, 379 |
| TasI | AATT | 4 cut(s) | 417, 563, 590, 599 |
| TatI | WGTACW | 1 cut(s) | 421 |
| TauI | GCSGC | 1 cut(s) | 625 |
| TfiI | GAWTC | 3 cut(s) | 428, 506, 537 |
| Tru1I | TTAA | 3 cut(s) | 191, 512, 697 |
| Tru9I | TTAA | 3 cut(s) | 191, 512, 697 |
| TseFI | GTSAC | 2 cut(s) | 84, 343 |
| Tsp45I | GTSAC | 2 cut(s) | 84, 343 |
| TspDTI | ATGAA | 5 cut(s) | 120, 162, 420, 426, 529 |
| TspGWI | ACGGA | 1 cut(s) | 592 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 568 |
| Vha464I | CTTAAG | 1 cut(s) | 190 |
| VpaK11BI | GGWCC | 1 cut(s) | 558 |
| XapI | RAATTY | 1 cut(s) | 590 |
| Zsp2I | ATGCAT | 1 cut(s) | 109 |