kDa ribonucleoprotein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 296 |
| Acc16I | TGCGCA | 1 cut(s) | 1134 |
| Acc36I | ACCTGC | 1 cut(s) | 221 |
| AccII | CGCG | 1 cut(s) | 1288 |
| AciI | CCGC | 7 cut(s) | 23, 577, 1155, 1288, 1758, 2098, 2263 |
| AclI | AACGTT | 1 cut(s) | 639 |
| AclWI | GGATC | 2 cut(s) | 1135, 1738 |
| AcoI | YGGCCR | 1 cut(s) | 578 |
| AcsI | RAATTY | 5 cut(s) | 377, 593, 1022, 1625, 2134 |
| AcuI | CTGAAG | 1 cut(s) | 465 |
| AfaI | GTAC | 3 cut(s) | 689, 948, 1551 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 61, 284, 753, 842, 931, 1445, 1534 |
| AgsI | TTSAA | 9 cut(s) | 556, 763, 986, 1366, 1589, 1893, 2087, 2143, 2197 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1761 |
| AhlI | ACTAGT | 2 cut(s) | 794, 1397 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 918, 950, 1521, 1553 |
| AleI | CACNNNNGTG | 1 cut(s) | 2223 |
| Alw26I | GTCTC | 5 cut(s) | 13, 923, 1191, 1526, 2151 |
| AlwI | GGATC | 2 cut(s) | 1135, 1738 |
| AoxI | GGCC | 5 cut(s) | 476, 578, 2064, 2215, 2277 |
| ApeKI | GCWGC | 8 cut(s) | 175, 217, 997, 1085, 1100, 1600, 1688, 2036 |
| ApoI | RAATTY | 5 cut(s) | 377, 593, 1022, 1625, 2134 |
| AspLEI | GCGC | 2 cut(s) | 1135, 1288 |
| AspS9I | GGNCC | 3 cut(s) | 52, 476, 2260 |
| AsuHPI | GGTGA | 3 cut(s) | 595, 626, 2129 |
| AvaII | GGWCC | 2 cut(s) | 52, 2260 |
| BaeGI | GKGCMC | 3 cut(s) | 564, 833, 1436 |
| BbsI | GAAGAC | 2 cut(s) | 103, 2094 |
| BbvCI | CCTCAGC | 1 cut(s) | 1355 |
| BbvI | GCAGC | 8 cut(s) | 187, 204, 1009, 1097, 1112, 1612, 1700, 2048 |
| BccI | CCATC | 8 cut(s) | 302, 451, 467, 565, 1214, 1817, 1904, 2228 |
| BceAI | ACGGC | 1 cut(s) | 182 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2057, 2091 |
| BciVI | GTATCC | 1 cut(s) | 1317 |
| BclI | TGATCA | 2 cut(s) | 46, 1987 |
| BcoDI | GTCTC | 5 cut(s) | 13, 923, 1191, 1526, 2151 |
| BcuI | ACTAGT | 2 cut(s) | 794, 1397 |
| BfaI | CTAG | 9 cut(s) | 81, 777, 795, 1089, 1106, 1380, 1398, 1692, 1709 |
| BfmI | CTRYAG | 1 cut(s) | 748 |
| BfuAI | ACCTGC | 1 cut(s) | 221 |
| BfuI | GTATCC | 1 cut(s) | 1317 |
| BlpI | GCTNAGC | 1 cut(s) | 1949 |
| Bme18I | GGWCC | 2 cut(s) | 52, 2260 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1761 |
| BmgT120I | GGNCC | 3 cut(s) | 52, 476, 2260 |
| BmiI | GGNNCC | 3 cut(s) | 54, 714, 745 |
| BmsI | GCATC | 3 cut(s) | 217, 1054, 1657 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2124 |
| BpiI | GAAGAC | 2 cut(s) | 103, 2094 |
| BpmI | CTGGAG | 3 cut(s) | 92, 1080, 1683 |
| Bpu10I | CCTNAGC | 4 cut(s) | 360, 837, 1355, 1440 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1949 |
| BsaBI | GATNNNNATC | 1 cut(s) | 45 |
| BsaI | GGTCTC | 1 cut(s) | 13 |
| BsaJI | CCNNGG | 5 cut(s) | 60, 156, 819, 1422, 2218 |
| BsaWI | WCCGGW | 1 cut(s) | 37 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 61, 284, 753, 842, 931, 1445, 1534 |
| Bse118I | RCCGGY | 3 cut(s) | 580, 2078, 2254 |
| Bse1I | ACTGG | 2 cut(s) | 26, 75 |
| Bse8I | GATNNNNATC | 1 cut(s) | 45 |
| BseDI | CCNNGG | 5 cut(s) | 60, 156, 819, 1422, 2218 |
| BseGI | GGATG | 4 cut(s) | 1225, 1828, 1880, 1948 |
| BseJI | GATNNNNATC | 1 cut(s) | 45 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 61, 284, 753, 842, 931, 1445, 1534 |
| BseMII | CTCAG | 5 cut(s) | 374, 401, 828, 1346, 1431 |
| BseNI | ACTGG | 2 cut(s) | 26, 75 |
| BseRI | GAGGAG | 4 cut(s) | 542, 551, 680, 2169 |
| BseSI | GKGCMC | 3 cut(s) | 564, 833, 1436 |
| BseX3I | CGGCCG | 1 cut(s) | 578 |
| BseXI | GCAGC | 8 cut(s) | 187, 204, 1009, 1097, 1112, 1612, 1700, 2048 |
| BsgI | GTGCAG | 2 cut(s) | 203, 2055 |
| Bsh1236I | CGCG | 1 cut(s) | 1288 |
| Bsh1285I | CGRYCG | 2 cut(s) | 38, 581 |
| BshFI | GGCC | 5 cut(s) | 478, 580, 2066, 2217, 2279 |
| BsiEI | CGRYCG | 2 cut(s) | 38, 581 |
| BsiSI | CCGG | 6 cut(s) | 38, 581, 2079, 2131, 2151, 2255 |
| BslFI | GGGAC | 3 cut(s) | 38, 1306, 2016 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 61, 284, 753, 842, 931, 1445, 1534 |
| BsmAI | GTCTC | 5 cut(s) | 13, 923, 1191, 1526, 2151 |
| BsmBI | CGTCTC | 3 cut(s) | 923, 1191, 1526 |
| BsmFI | GGGAC | 3 cut(s) | 38, 1306, 2016 |
| BsmI | GAATGC | 1 cut(s) | 2256 |
| BsnI | GGCC | 5 cut(s) | 478, 580, 2066, 2217, 2279 |
| Bso31I | GGTCTC | 1 cut(s) | 13 |
| Bsp1286I | GDGCHC | 3 cut(s) | 564, 833, 1436 |
| Bsp1407I | TGTACA | 2 cut(s) | 946, 1549 |
| Bsp143I | GATC | 7 cut(s) | 3, 46, 978, 1127, 1581, 1730, 1987 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1949 |
| Bsp19I | CCATGG | 1 cut(s) | 60 |
| BspACI | CCGC | 7 cut(s) | 23, 577, 1155, 1288, 1758, 2098, 2263 |
| BspANI | GGCC | 5 cut(s) | 478, 580, 2066, 2217, 2279 |
| BspCNI | CTCAG | 5 cut(s) | 373, 400, 829, 1347, 1432 |
| BspFNI | CGCG | 1 cut(s) | 1288 |
| BspLI | GGNNCC | 3 cut(s) | 54, 714, 745 |
| BspMI | ACCTGC | 1 cut(s) | 221 |
| BspPI | GGATC | 2 cut(s) | 1135, 1738 |
| BspQI | GCTCTTC | 1 cut(s) | 1344 |
| BspTNI | GGTCTC | 1 cut(s) | 13 |
| BsrFI | RCCGGY | 3 cut(s) | 580, 2078, 2254 |
| BsrGI | TGTACA | 2 cut(s) | 946, 1549 |
| BsrI | ACTGG | 2 cut(s) | 26, 75 |
| BssAI | RCCGGY | 3 cut(s) | 580, 2078, 2254 |
| BssECI | CCNNGG | 5 cut(s) | 60, 156, 819, 1422, 2218 |
| BssMI | GATC | 7 cut(s) | 3, 46, 978, 1127, 1581, 1730, 1987 |
| BssT1I | CCWWGG | 3 cut(s) | 60, 819, 1422 |
| Bst4CI | ACNGT | 4 cut(s) | 240, 730, 934, 1537 |
| Bst6I | CTCTTC | 9 cut(s) | 91, 666, 957, 981, 1008, 1344, 1560, 1584, 1611 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 548 |
| BstAUI | TGTACA | 2 cut(s) | 946, 1549 |
| BstC8I | GCNNGC | 3 cut(s) | 1002, 1605, 2080 |
| BstDEI | CTNAG | 8 cut(s) | 360, 387, 788, 837, 1355, 1391, 1440, 1949 |
| BstDSI | CCRYGG | 3 cut(s) | 60, 156, 2218 |
| BstEII | GGTNACC | 1 cut(s) | 2117 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 751 |
| BstF5I | GGATG | 4 cut(s) | 1225, 1828, 1880, 1948 |
| BstFNI | CGCG | 1 cut(s) | 1288 |
| BstHHI | GCGC | 2 cut(s) | 1135, 1288 |
| BstKTI | GATC | 7 cut(s) | 6, 49, 981, 1130, 1584, 1733, 1990 |
| BstMAI | GTCTC | 5 cut(s) | 13, 923, 1191, 1526, 2151 |
| BstMBI | GATC | 7 cut(s) | 3, 46, 978, 1127, 1581, 1730, 1987 |
| BstMCI | CGRYCG | 2 cut(s) | 38, 581 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 31, 73, 539, 548 |
| BstNSI | RCATGY | 2 cut(s) | 1161, 1764 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2124 |
| BstPI | GGTNACC | 1 cut(s) | 2117 |
| BstSFI | CTRYAG | 1 cut(s) | 748 |
| BstSLI | GKGCMC | 3 cut(s) | 564, 833, 1436 |
| BstUI | CGCG | 1 cut(s) | 1288 |
| BstV1I | GCAGC | 8 cut(s) | 187, 204, 1009, 1097, 1112, 1612, 1700, 2048 |
| BstV2I | GAAGAC | 2 cut(s) | 103, 2094 |
| BstX2I | RGATCY | 2 cut(s) | 1127, 1730 |
| BstYI | RGATCY | 2 cut(s) | 1127, 1730 |
| BstZI | CGGCCG | 1 cut(s) | 578 |
| BsuI | GTATCC | 1 cut(s) | 1317 |
| BsuRI | GGCC | 5 cut(s) | 478, 580, 2066, 2217, 2279 |
| BtgI | CCRYGG | 3 cut(s) | 60, 156, 2218 |
| BtsCI | GGATG | 4 cut(s) | 1225, 1828, 1880, 1948 |
| BtsI | GCAGTG | 2 cut(s) | 120, 199 |
| BtsIMutI | CAGTG | 3 cut(s) | 33, 120, 199 |
| BveI | ACCTGC | 1 cut(s) | 221 |
| Cac8I | GCNNGC | 3 cut(s) | 1002, 1605, 2080 |
| CfoI | GCGC | 2 cut(s) | 1135, 1288 |
| Cfr10I | RCCGGY | 3 cut(s) | 580, 2078, 2254 |
| Cfr13I | GGNCC | 3 cut(s) | 52, 476, 2260 |
| Csp6I | GTAC | 3 cut(s) | 688, 947, 1550 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 293, 328 |
| CviQI | GTAC | 3 cut(s) | 688, 947, 1550 |
| DdeI | CTNAG | 8 cut(s) | 360, 387, 788, 837, 1355, 1391, 1440, 1949 |
| DpnI | GATC | 7 cut(s) | 5, 48, 980, 1129, 1583, 1732, 1989 |
| DpnII | GATC | 7 cut(s) | 3, 46, 978, 1127, 1581, 1730, 1987 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1761 |
| EaeI | YGGCCR | 1 cut(s) | 578 |
| EagI | CGGCCG | 1 cut(s) | 578 |
| Eam1104I | CTCTTC | 9 cut(s) | 91, 666, 957, 981, 1008, 1344, 1560, 1584, 1611 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1761 |
| EarI | CTCTTC | 9 cut(s) | 91, 666, 957, 981, 1008, 1344, 1560, 1584, 1611 |
| EciI | GGCGGA | 2 cut(s) | 2113, 2252 |
| EclXI | CGGCCG | 1 cut(s) | 578 |
| Eco130I | CCWWGG | 3 cut(s) | 60, 819, 1422 |
| Eco31I | GGTCTC | 1 cut(s) | 13 |
| Eco47I | GGWCC | 2 cut(s) | 52, 2260 |
| Eco52I | CGGCCG | 1 cut(s) | 578 |
| Eco57I | CTGAAG | 1 cut(s) | 465 |
| Eco91I | GGTNACC | 1 cut(s) | 2117 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 751 |
| EcoO109I | RGGNCCY | 1 cut(s) | 52 |
| EcoO65I | GGTNACC | 1 cut(s) | 2117 |
| EcoRI | GAATTC | 1 cut(s) | 2134 |
| EcoT14I | CCWWGG | 3 cut(s) | 60, 819, 1422 |
| EcoT22I | ATGCAT | 1 cut(s) | 2203 |
| ErhI | CCWWGG | 3 cut(s) | 60, 819, 1422 |
| Esp3I | CGTCTC | 3 cut(s) | 923, 1191, 1526 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 88, 120 |
| FaqI | GGGAC | 3 cut(s) | 38, 1306, 2016 |
| FbaI | TGATCA | 2 cut(s) | 46, 1987 |
| FokI | GGATG | 4 cut(s) | 1232, 1835, 1887, 1955 |
| FspBI | CTAG | 9 cut(s) | 81, 777, 795, 1089, 1106, 1380, 1398, 1692, 1709 |
| FspI | TGCGCA | 1 cut(s) | 1134 |
| GlaI | GCGC | 2 cut(s) | 1134, 1287 |
| GsuI | CTGGAG | 3 cut(s) | 92, 1080, 1683 |
| HaeIII | GGCC | 5 cut(s) | 478, 580, 2066, 2217, 2279 |
| HapII | CCGG | 6 cut(s) | 38, 581, 2079, 2131, 2151, 2255 |
| HhaI | GCGC | 2 cut(s) | 1135, 1288 |
| Hin6I | GCGC | 2 cut(s) | 1133, 1286 |
| HinP1I | GCGC | 2 cut(s) | 1133, 1286 |
| HincII | GTYRAC | 3 cut(s) | 643, 816, 1419 |
| HindII | GTYRAC | 3 cut(s) | 643, 816, 1419 |
| HindIII | AAGCTT | 1 cut(s) | 2107 |
| HpaI | GTTAAC | 2 cut(s) | 816, 1419 |
| HpaII | CCGG | 6 cut(s) | 38, 581, 2079, 2131, 2151, 2255 |
| HphI | GGTGA | 3 cut(s) | 595, 626, 2129 |
| Hpy166II | GTNNAC | 8 cut(s) | 236, 643, 816, 947, 1148, 1419, 1550, 1751 |
| Hpy188I | TCNGA | 5 cut(s) | 46, 226, 291, 591, 2164 |
| Hpy188III | TCNNGA | 3 cut(s) | 389, 836, 1439 |
| Hpy8I | GTNNAC | 8 cut(s) | 236, 643, 816, 947, 1148, 1419, 1550, 1751 |
| Hpy99I | CGWCG | 1 cut(s) | 2234 |
| HpyAV | CCTTC | 9 cut(s) | 489, 747, 757, 907, 1360, 1510, 1894, 2196, 2236 |
| HpyCH4III | ACNGT | 4 cut(s) | 240, 730, 934, 1537 |
| HpyCH4IV | ACGT | 3 cut(s) | 639, 907, 1510 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 31, 73, 539, 548 |
| HpyF3I | CTNAG | 8 cut(s) | 360, 387, 788, 837, 1355, 1391, 1440, 1949 |
| HpySE526I | ACGT | 3 cut(s) | 639, 907, 1510 |
| HspAI | GCGC | 2 cut(s) | 1133, 1286 |
| KroI | GCCGGC | 1 cut(s) | 2078 |
| KroNI | GCCGGC | 1 cut(s) | 2080 |
| Ksp22I | TGATCA | 2 cut(s) | 46, 1987 |
| KspAI | GTTAAC | 2 cut(s) | 816, 1419 |
| Kzo9I | GATC | 7 cut(s) | 3, 46, 978, 1127, 1581, 1730, 1987 |
| LguI | GCTCTTC | 1 cut(s) | 1344 |
| LmnI | GCTCC | 5 cut(s) | 64, 73, 391, 2100, 2164 |
| Lsp1109I | GCAGC | 8 cut(s) | 187, 204, 1009, 1097, 1112, 1612, 1700, 2048 |
| LweI | GCATC | 3 cut(s) | 217, 1054, 1657 |
| MaeI | CTAG | 9 cut(s) | 81, 777, 795, 1089, 1106, 1380, 1398, 1692, 1709 |
| MaeII | ACGT | 3 cut(s) | 639, 907, 1510 |
| MaeIII | GTNAC | 4 cut(s) | 724, 1961, 2117, 2225 |
| MalI | GATC | 7 cut(s) | 5, 48, 980, 1129, 1583, 1732, 1989 |
| MboI | GATC | 7 cut(s) | 3, 46, 978, 1127, 1581, 1730, 1987 |
| MflI | RGATCY | 2 cut(s) | 1127, 1730 |
| MhlI | GDGCHC | 3 cut(s) | 564, 833, 1436 |
| MlyI | GAGTC | 3 cut(s) | 638, 2134, 2153 |
| MmeI | TCCRAC | 6 cut(s) | 672, 1187, 1318, 1790, 1950, 1993 |
| Mph1103I | ATGCAT | 1 cut(s) | 2203 |
| MroNI | GCCGGC | 1 cut(s) | 2078 |
| MseI | TTAA | 8 cut(s) | 435, 815, 941, 1208, 1418, 1544, 1811, 2111 |
| MslI | CAYNNNNRTG | 2 cut(s) | 225, 2223 |
| MspI | CCGG | 6 cut(s) | 38, 581, 2079, 2131, 2151, 2255 |
| Mva1269I | GAATGC | 1 cut(s) | 2256 |
| MvnI | CGCG | 1 cut(s) | 1288 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 31, 73, 539, 548 |
| NaeI | GCCGGC | 1 cut(s) | 2080 |
| NcoI | CCATGG | 1 cut(s) | 60 |
| NdeII | GATC | 7 cut(s) | 3, 46, 978, 1127, 1581, 1730, 1987 |
| NgoMIV | GCCGGC | 1 cut(s) | 2078 |
| NlaIV | GGNNCC | 3 cut(s) | 54, 714, 745 |
| NmeAIII | GCCGAG | 1 cut(s) | 2065 |
| NmuCI | GTSAC | 3 cut(s) | 1961, 2117, 2225 |
| NsbI | TGCGCA | 1 cut(s) | 1134 |
| NsiI | ATGCAT | 1 cut(s) | 2203 |
| NspI | RCATGY | 2 cut(s) | 1161, 1764 |
| OliI | CACNNNNGTG | 1 cut(s) | 2223 |
| PciSI | GCTCTTC | 1 cut(s) | 1344 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2226, 2235 |
| PctI | GAATGC | 1 cut(s) | 2256 |
| PdiI | GCCGGC | 1 cut(s) | 2080 |
| PfeI | GAWTC | 7 cut(s) | 41, 383, 586, 617, 877, 1480, 2180 |
| PleI | GAGTC | 3 cut(s) | 638, 2133, 2153 |
| PpsI | GAGTC | 3 cut(s) | 638, 2133, 2153 |
| PpuMI | RGGWCCY | 1 cut(s) | 52 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2124 |
| PsiI | TTATAA | 1 cut(s) | 296 |
| Psp1406I | AACGTT | 1 cut(s) | 639 |
| Psp5II | RGGWCCY | 1 cut(s) | 52 |
| PspEI | GGTNACC | 1 cut(s) | 2117 |
| PspN4I | GGNNCC | 3 cut(s) | 54, 714, 745 |
| PspPI | GGNCC | 3 cut(s) | 52, 476, 2260 |
| PspPPI | RGGWCCY | 1 cut(s) | 52 |
| PsuI | RGATCY | 2 cut(s) | 1127, 1730 |
| RsaI | GTAC | 3 cut(s) | 689, 948, 1551 |
| RsaNI | GTAC | 3 cut(s) | 688, 947, 1550 |
| RseI | CAYNNNNRTG | 2 cut(s) | 225, 2223 |
| SapI | GCTCTTC | 1 cut(s) | 1344 |
| SaqAI | TTAA | 8 cut(s) | 435, 815, 941, 1208, 1418, 1544, 1811, 2111 |
| Sau3AI | GATC | 7 cut(s) | 3, 46, 978, 1127, 1581, 1730, 1987 |
| Sau96I | GGNCC | 3 cut(s) | 52, 476, 2260 |
| SchI | GAGTC | 3 cut(s) | 638, 2134, 2153 |
| SduI | GDGCHC | 3 cut(s) | 564, 833, 1436 |
| SfaNI | GCATC | 3 cut(s) | 217, 1054, 1657 |
| SfcI | CTRYAG | 1 cut(s) | 748 |
| SinI | GGWCC | 2 cut(s) | 52, 2260 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 225, 2223 |
| SpeI | ACTAGT | 2 cut(s) | 794, 1397 |
| SsiI | CCGC | 7 cut(s) | 23, 577, 1155, 1288, 1758, 2098, 2263 |
| SspI | AATATT | 2 cut(s) | 957, 1560 |
| SspMI | CTAG | 9 cut(s) | 81, 777, 795, 1089, 1106, 1380, 1398, 1692, 1709 |
| StyI | CCWWGG | 3 cut(s) | 60, 819, 1422 |
| TaaI | ACNGT | 4 cut(s) | 240, 730, 934, 1537 |
| TaiI | ACGT | 3 cut(s) | 642, 910, 1513 |
| TaqI | TCGA | 3 cut(s) | 1180, 1783, 2178 |
| TatI | WGTACW | 2 cut(s) | 946, 1549 |
| TauI | GCSGC | 2 cut(s) | 580, 1291 |
| TfiI | GAWTC | 7 cut(s) | 41, 383, 586, 617, 877, 1480, 2180 |
| Tru1I | TTAA | 8 cut(s) | 435, 815, 941, 1208, 1418, 1544, 1811, 2111 |
| Tru9I | TTAA | 8 cut(s) | 435, 815, 941, 1208, 1418, 1544, 1811, 2111 |
| TscAI | CASTG | 3 cut(s) | 33, 127, 199 |
| TseFI | GTSAC | 3 cut(s) | 1961, 2117, 2225 |
| TseI | GCWGC | 8 cut(s) | 175, 217, 997, 1085, 1100, 1600, 1688, 2036 |
| Tsp45I | GTSAC | 3 cut(s) | 1961, 2117, 2225 |
| TspDTI | ATGAA | 3 cut(s) | 672, 1188, 1791 |
| TspGWI | ACGGA | 3 cut(s) | 97, 173, 579 |
| TspRI | CASTG | 3 cut(s) | 33, 127, 199 |
| VpaK11BI | GGWCC | 2 cut(s) | 52, 2260 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 751 |
| XapI | RAATTY | 5 cut(s) | 377, 593, 1022, 1625, 2134 |
| XceI | RCATGY | 2 cut(s) | 1161, 1764 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 67 |
| XspI | CTAG | 9 cut(s) | 81, 777, 795, 1089, 1106, 1380, 1398, 1692, 1709 |
| Zsp2I | ATGCAT | 1 cut(s) | 2203 |