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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1347 |
| Acc65I | GGTACC | 1 cut(s) | 1182 |
| AccB1I | GGYRCC | 1 cut(s) | 1182 |
| AccI | GTMKAC | 1 cut(s) | 1173 |
| AccII | CGCG | 1 cut(s) | 117 |
| AccIII | TCCGGA | 1 cut(s) | 1683 |
| AciI | CCGC | 4 cut(s) | 54, 188, 1426, 1532 |
| AclWI | GGATC | 4 cut(s) | 1123, 1406, 1419, 1620 |
| AcoI | YGGCCR | 2 cut(s) | 804, 854 |
| AcsI | RAATTY | 4 cut(s) | 230, 890, 1525, 1700 |
| AfaI | GTAC | 4 cut(s) | 936, 963, 1184, 1265 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 187, 338, 1267 |
| AflIII | ACRYGT | 2 cut(s) | 115, 1653 |
| AgsI | TTSAA | 7 cut(s) | 19, 401, 1009, 1127, 1245, 1420, 1604 |
| AjiI | CACGTC | 1 cut(s) | 1052 |
| AjnI | CCWGG | 2 cut(s) | 100, 504 |
| Alw26I | GTCTC | 1 cut(s) | 106 |
| AlwI | GGATC | 4 cut(s) | 1123, 1406, 1419, 1620 |
| Aor13HI | TCCGGA | 1 cut(s) | 1683 |
| AoxI | GGCC | 2 cut(s) | 804, 854 |
| ApeKI | GCWGC | 3 cut(s) | 371, 413, 1339 |
| ApoI | RAATTY | 4 cut(s) | 230, 890, 1525, 1700 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 64, 96 |
| Asp718I | GGTACC | 1 cut(s) | 1182 |
| AsuC2I | CCSGG | 1 cut(s) | 333 |
| AsuHPI | GGTGA | 3 cut(s) | 202, 353, 1040 |
| AsuII | TTCGAA | 1 cut(s) | 1065 |
| AsuNHI | GCTAGC | 1 cut(s) | 1136 |
| BalI | TGGCCA | 1 cut(s) | 856 |
| BamHI | GGATCC | 1 cut(s) | 1411 |
| BanI | GGYRCC | 1 cut(s) | 1182 |
| BbsI | GAAGAC | 1 cut(s) | 951 |
| BbvCI | CCTCAGC | 1 cut(s) | 519 |
| BbvI | GCAGC | 3 cut(s) | 383, 400, 1326 |
| BccI | CCATC | 5 cut(s) | 251, 355, 380, 1040, 1265 |
| BceAI | ACGGC | 1 cut(s) | 1329 |
| BciT130I | CCWGG | 2 cut(s) | 102, 506 |
| BcnI | CCSGG | 1 cut(s) | 333 |
| BcoDI | GTCTC | 1 cut(s) | 106 |
| BfaI | CTAG | 8 cut(s) | 51, 242, 410, 680, 734, 1112, 1137, 1551 |
| BfmI | CTRYAG | 1 cut(s) | 576 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 647 |
| BisI | GCNGC | 3 cut(s) | 372, 414, 1340 |
| BlsI | GCNGC | 3 cut(s) | 373, 415, 1341 |
| Bme1390I | CCNGG | 3 cut(s) | 102, 333, 506 |
| BmgBI | CACGTC | 1 cut(s) | 1052 |
| BmiI | GGNNCC | 2 cut(s) | 1184, 1413 |
| BmrFI | CCNGG | 3 cut(s) | 102, 333, 506 |
| BmrI | ACTGGG | 1 cut(s) | 1276 |
| BmsI | GCATC | 5 cut(s) | 106, 186, 457, 628, 1356 |
| BmtI | GCTAGC | 1 cut(s) | 1140 |
| BmuI | ACTGGG | 1 cut(s) | 1276 |
| BpiI | GAAGAC | 1 cut(s) | 951 |
| BpmI | CTGGAG | 1 cut(s) | 1458 |
| Bpu10I | CCTNAGC | 4 cut(s) | 93, 519, 558, 957 |
| Bpu14I | TTCGAA | 1 cut(s) | 1065 |
| BpuMI | CCSGG | 1 cut(s) | 333 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1611 |
| BsaJI | CCNNGG | 3 cut(s) | 505, 834, 897 |
| BsaWI | WCCGGW | 2 cut(s) | 1260, 1683 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 114, 144 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 187, 338, 1267 |
| Bse1I | ACTGG | 5 cut(s) | 546, 942, 1159, 1282, 1441 |
| Bse3DI | GCAATG | 1 cut(s) | 1467 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1611 |
| BseAI | TCCGGA | 1 cut(s) | 1683 |
| BseBI | CCWGG | 2 cut(s) | 102, 506 |
| BseDI | CCNNGG | 3 cut(s) | 505, 834, 897 |
| BseGI | GGATG | 5 cut(s) | 97, 177, 472, 1276, 1371 |
| BseJI | GATNNNNATC | 1 cut(s) | 1611 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 187, 338, 1267 |
| BseMI | GCAATG | 1 cut(s) | 1467 |
| BseMII | CTCAG | 3 cut(s) | 84, 510, 572 |
| BseNI | ACTGG | 5 cut(s) | 546, 942, 1159, 1282, 1441 |
| BseRI | GAGGAG | 2 cut(s) | 697, 1654 |
| BseXI | GCAGC | 3 cut(s) | 383, 400, 1326 |
| BseYI | CCCAGC | 2 cut(s) | 843, 1287 |
| Bsh1236I | CGCG | 1 cut(s) | 117 |
| BshFI | GGCC | 2 cut(s) | 806, 856 |
| BshNI | GGYRCC | 1 cut(s) | 1182 |
| BsiSI | CCGG | 3 cut(s) | 333, 1261, 1684 |
| BslFI | GGGAC | 4 cut(s) | 100, 286, 464, 1270 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 187, 338, 1267 |
| BsmAI | GTCTC | 1 cut(s) | 106 |
| BsmBI | CGTCTC | 1 cut(s) | 106 |
| BsmFI | GGGAC | 4 cut(s) | 100, 286, 464, 1270 |
| BsmI | GAATGC | 1 cut(s) | 701 |
| BsnI | GGCC | 2 cut(s) | 806, 856 |
| Bsp119I | TTCGAA | 1 cut(s) | 1065 |
| Bsp13I | TCCGGA | 1 cut(s) | 1683 |
| Bsp143I | GATC | 6 cut(s) | 550, 1115, 1248, 1411, 1448, 1612 |
| Bsp19I | CCATGG | 1 cut(s) | 834 |
| BspACI | CCGC | 4 cut(s) | 54, 188, 1426, 1532 |
| BspANI | GGCC | 2 cut(s) | 806, 856 |
| BspCNI | CTCAG | 3 cut(s) | 85, 511, 571 |
| BspEI | TCCGGA | 1 cut(s) | 1683 |
| BspFNI | CGCG | 1 cut(s) | 117 |
| BspLI | GGNNCC | 2 cut(s) | 1184, 1413 |
| BspOI | GCTAGC | 1 cut(s) | 1140 |
| BspPI | GGATC | 4 cut(s) | 1123, 1406, 1419, 1620 |
| BspT104I | TTCGAA | 1 cut(s) | 1065 |
| BspT107I | GGYRCC | 1 cut(s) | 1182 |
| BsrDI | GCAATG | 1 cut(s) | 1467 |
| BsrI | ACTGG | 5 cut(s) | 546, 942, 1159, 1282, 1441 |
| BssECI | CCNNGG | 3 cut(s) | 505, 834, 897 |
| BssMI | GATC | 6 cut(s) | 550, 1115, 1248, 1411, 1448, 1612 |
| BssNAI | GTATAC | 1 cut(s) | 1174 |
| BssT1I | CCWWGG | 2 cut(s) | 834, 897 |
| Bst1107I | GTATAC | 1 cut(s) | 1174 |
| Bst2UI | CCWGG | 2 cut(s) | 102, 506 |
| Bst4CI | ACNGT | 4 cut(s) | 688, 823, 1375, 1399 |
| Bst6I | CTCTTC | 5 cut(s) | 100, 908, 914, 1026, 1415 |
| BstBI | TTCGAA | 1 cut(s) | 1065 |
| BstC8I | GCNNGC | 3 cut(s) | 831, 999, 1138 |
| BstDEI | CTNAG | 5 cut(s) | 93, 519, 558, 787, 957 |
| BstDSI | CCRYGG | 1 cut(s) | 834 |
| BstEII | GGTNACC | 2 cut(s) | 10, 1428 |
| BstF5I | GGATG | 5 cut(s) | 97, 177, 472, 1276, 1371 |
| BstFNI | CGCG | 1 cut(s) | 117 |
| BstKTI | GATC | 6 cut(s) | 553, 1118, 1251, 1414, 1451, 1615 |
| BstMAI | GTCTC | 1 cut(s) | 106 |
| BstMBI | GATC | 6 cut(s) | 550, 1115, 1248, 1411, 1448, 1612 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 233, 647, 862, 1500 |
| BstNI | CCWGG | 2 cut(s) | 102, 506 |
| BstNSI | RCATGY | 2 cut(s) | 1591, 1657 |
| BstPI | GGTNACC | 2 cut(s) | 10, 1428 |
| BstSCI | CCNGG | 3 cut(s) | 100, 331, 504 |
| BstSFI | CTRYAG | 1 cut(s) | 576 |
| BstUI | CGCG | 1 cut(s) | 117 |
| BstV1I | GCAGC | 3 cut(s) | 383, 400, 1326 |
| BstV2I | GAAGAC | 1 cut(s) | 951 |
| BstX2I | RGATCY | 2 cut(s) | 1411, 1612 |
| BstYI | RGATCY | 2 cut(s) | 1411, 1612 |
| BstZ17I | GTATAC | 1 cut(s) | 1174 |
| BsuRI | GGCC | 2 cut(s) | 806, 856 |
| BtgI | CCRYGG | 1 cut(s) | 834 |
| BtgZI | GCGATG | 1 cut(s) | 714 |
| BtrI | CACGTC | 1 cut(s) | 1052 |
| BtsCI | GGATG | 5 cut(s) | 97, 177, 472, 1276, 1371 |
| BtsIMutI | CAGTG | 2 cut(s) | 1395, 1434 |
| Cac8I | GCNNGC | 3 cut(s) | 831, 999, 1138 |
| CseI | GACGC | 1 cut(s) | 123 |
| Csp6I | GTAC | 4 cut(s) | 935, 962, 1183, 1264 |
| CviQI | GTAC | 4 cut(s) | 935, 962, 1183, 1264 |
| DdeI | CTNAG | 5 cut(s) | 93, 519, 558, 787, 957 |
| DpnI | GATC | 6 cut(s) | 552, 1117, 1250, 1413, 1450, 1614 |
| DpnII | GATC | 6 cut(s) | 550, 1115, 1248, 1411, 1448, 1612 |
| DraI | TTTAAA | 1 cut(s) | 1042 |
| EaeI | YGGCCR | 2 cut(s) | 804, 854 |
| Eam1104I | CTCTTC | 5 cut(s) | 100, 908, 914, 1026, 1415 |
| EarI | CTCTTC | 5 cut(s) | 100, 908, 914, 1026, 1415 |
| Eco130I | CCWWGG | 2 cut(s) | 834, 897 |
| Eco91I | GGTNACC | 2 cut(s) | 10, 1428 |
| EcoO65I | GGTNACC | 2 cut(s) | 10, 1428 |
| EcoRII | CCWGG | 2 cut(s) | 100, 504 |
| EcoT14I | CCWWGG | 2 cut(s) | 834, 897 |
| ErhI | CCWWGG | 2 cut(s) | 834, 897 |
| Esp3I | CGTCTC | 1 cut(s) | 106 |
| FaqI | GGGAC | 4 cut(s) | 100, 286, 464, 1270 |
| FauI | CCCGC | 1 cut(s) | 1525 |
| FblI | GTMKAC | 1 cut(s) | 1173 |
| Fnu4HI | GCNGC | 3 cut(s) | 372, 414, 1340 |
| FokI | GGATG | 5 cut(s) | 84, 164, 479, 1283, 1378 |
| Fsp4HI | GCNGC | 3 cut(s) | 372, 414, 1340 |
| FspBI | CTAG | 8 cut(s) | 51, 242, 410, 680, 734, 1112, 1137, 1551 |
| GluI | GCNGC | 3 cut(s) | 372, 414, 1340 |
| GsaI | CCCAGC | 2 cut(s) | 847, 1291 |
| GsuI | CTGGAG | 1 cut(s) | 1458 |
| HaeIII | GGCC | 2 cut(s) | 806, 856 |
| HapII | CCGG | 3 cut(s) | 333, 1261, 1684 |
| HgaI | GACGC | 1 cut(s) | 123 |
| HincII | GTYRAC | 1 cut(s) | 1237 |
| HindII | GTYRAC | 1 cut(s) | 1237 |
| HinfI | GANTC | 6 cut(s) | 88, 376, 704, 1073, 1201, 1381 |
| HpaII | CCGG | 3 cut(s) | 333, 1261, 1684 |
| HphI | GGTGA | 3 cut(s) | 202, 353, 1040 |
| Hpy166II | GTNNAC | 4 cut(s) | 133, 317, 1174, 1237 |
| Hpy188I | TCNGA | 1 cut(s) | 1120 |
| Hpy188III | TCNNGA | 5 cut(s) | 92, 1190, 1385, 1576, 1684 |
| Hpy8I | GTNNAC | 4 cut(s) | 133, 317, 1174, 1237 |
| HpyAV | CCTTC | 8 cut(s) | 13, 19, 255, 451, 457, 999, 1196, 1251 |
| HpyCH4III | ACNGT | 4 cut(s) | 688, 823, 1375, 1399 |
| HpyCH4IV | ACGT | 5 cut(s) | 74, 163, 1051, 1061, 1103 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 233, 647, 862, 1500 |
| HpyF3I | CTNAG | 5 cut(s) | 93, 519, 558, 787, 957 |
| HpySE526I | ACGT | 5 cut(s) | 74, 163, 1051, 1061, 1103 |
| Kpn2I | TCCGGA | 1 cut(s) | 1683 |
| KpnI | GGTACC | 1 cut(s) | 1186 |
| Kzo9I | GATC | 6 cut(s) | 550, 1115, 1248, 1411, 1448, 1612 |
| LmnI | GCTCC | 2 cut(s) | 840, 1006 |
| Lsp1109I | GCAGC | 3 cut(s) | 383, 400, 1326 |
| LweI | GCATC | 5 cut(s) | 106, 186, 457, 628, 1356 |
| MaeI | CTAG | 8 cut(s) | 51, 242, 410, 680, 734, 1112, 1137, 1551 |
| MaeII | ACGT | 5 cut(s) | 74, 163, 1051, 1061, 1103 |
| MaeIII | GTNAC | 4 cut(s) | 10, 876, 1150, 1428 |
| MalI | GATC | 6 cut(s) | 552, 1117, 1250, 1413, 1450, 1614 |
| MboI | GATC | 6 cut(s) | 550, 1115, 1248, 1411, 1448, 1612 |
| MfeI | CAATTG | 3 cut(s) | 660, 1021, 1452 |
| MflI | RGATCY | 2 cut(s) | 1411, 1612 |
| MlsI | TGGCCA | 1 cut(s) | 856 |
| MluI | ACGCGT | 1 cut(s) | 115 |
| MluNI | TGGCCA | 1 cut(s) | 856 |
| MlyI | GAGTC | 5 cut(s) | 82, 370, 698, 1082, 1195 |
| Mox20I | TGGCCA | 1 cut(s) | 856 |
| MroI | TCCGGA | 1 cut(s) | 1683 |
| MscI | TGGCCA | 1 cut(s) | 856 |
| MseI | TTAA | 5 cut(s) | 438, 486, 974, 1041, 1310 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1472 |
| Msp20I | TGGCCA | 1 cut(s) | 856 |
| MspI | CCGG | 3 cut(s) | 333, 1261, 1684 |
| MspR9I | CCNGG | 3 cut(s) | 102, 333, 506 |
| MunI | CAATTG | 3 cut(s) | 660, 1021, 1452 |
| Mva1269I | GAATGC | 1 cut(s) | 701 |
| MvaI | CCWGG | 2 cut(s) | 102, 506 |
| MvnI | CGCG | 1 cut(s) | 117 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 233, 647, 862, 1500 |
| NciI | CCSGG | 1 cut(s) | 333 |
| NcoI | CCATGG | 1 cut(s) | 834 |
| NdeII | GATC | 6 cut(s) | 550, 1115, 1248, 1411, 1448, 1612 |
| NheI | GCTAGC | 1 cut(s) | 1136 |
| NlaIV | GGNNCC | 2 cut(s) | 1184, 1413 |
| NmuCI | GTSAC | 1 cut(s) | 876 |
| NspI | RCATGY | 2 cut(s) | 1591, 1657 |
| NspV | TTCGAA | 1 cut(s) | 1065 |
| PciI | ACATGT | 1 cut(s) | 1653 |
| PctI | GAATGC | 1 cut(s) | 701 |
| PfeI | GAWTC | 1 cut(s) | 1381 |
| PfoI | TCCNGGA | 1 cut(s) | 100 |
| PkrI | GCNGC | 3 cut(s) | 373, 415, 1341 |
| PleI | GAGTC | 5 cut(s) | 82, 370, 698, 1081, 1195 |
| PpsI | GAGTC | 5 cut(s) | 82, 370, 698, 1081, 1195 |
| PscI | ACATGT | 1 cut(s) | 1653 |
| PsiI | TTATAA | 1 cut(s) | 1347 |
| Psp6I | CCWGG | 2 cut(s) | 100, 504 |
| PspEI | GGTNACC | 2 cut(s) | 10, 1428 |
| PspFI | CCCAGC | 2 cut(s) | 843, 1287 |
| PspGI | CCWGG | 2 cut(s) | 100, 504 |
| PspN4I | GGNNCC | 2 cut(s) | 1184, 1413 |
| PsuI | RGATCY | 2 cut(s) | 1411, 1612 |
| RsaI | GTAC | 4 cut(s) | 936, 963, 1184, 1265 |
| RsaNI | GTAC | 4 cut(s) | 935, 962, 1183, 1264 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1472 |
| SaqAI | TTAA | 5 cut(s) | 438, 486, 974, 1041, 1310 |
| SatI | GCNGC | 3 cut(s) | 372, 414, 1340 |
| Sau3AI | GATC | 6 cut(s) | 550, 1115, 1248, 1411, 1448, 1612 |
| SchI | GAGTC | 5 cut(s) | 82, 370, 698, 1082, 1195 |
| ScrFI | CCNGG | 3 cut(s) | 102, 333, 506 |
| SfaNI | GCATC | 5 cut(s) | 106, 186, 457, 628, 1356 |
| SfcI | CTRYAG | 1 cut(s) | 576 |
| SfuI | TTCGAA | 1 cut(s) | 1065 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1472 |
| SsiI | CCGC | 4 cut(s) | 54, 188, 1426, 1532 |
| SspMI | CTAG | 8 cut(s) | 51, 242, 410, 680, 734, 1112, 1137, 1551 |
| StyD4I | CCNGG | 3 cut(s) | 100, 331, 504 |
| StyI | CCWWGG | 2 cut(s) | 834, 897 |
| TaaI | ACNGT | 4 cut(s) | 688, 823, 1375, 1399 |
| TaiI | ACGT | 5 cut(s) | 77, 166, 1054, 1064, 1106 |
| TaqI | TCGA | 2 cut(s) | 1065, 1204 |
| TfiI | GAWTC | 1 cut(s) | 1381 |
| Tru1I | TTAA | 5 cut(s) | 438, 486, 974, 1041, 1310 |
| Tru9I | TTAA | 5 cut(s) | 438, 486, 974, 1041, 1310 |
| TscAI | CASTG | 2 cut(s) | 1402, 1441 |
| TseFI | GTSAC | 1 cut(s) | 876 |
| TseI | GCWGC | 3 cut(s) | 371, 413, 1339 |
| Tsp45I | GTSAC | 1 cut(s) | 876 |
| TspDTI | ATGAA | 3 cut(s) | 825, 1394, 1396 |
| TspGWI | ACGGA | 2 cut(s) | 1404, 1574 |
| TspRI | CASTG | 2 cut(s) | 1402, 1441 |
| XapI | RAATTY | 4 cut(s) | 230, 890, 1525, 1700 |
| XceI | RCATGY | 2 cut(s) | 1591, 1657 |
| XmiI | GTMKAC | 1 cut(s) | 1173 |
| XspI | CTAG | 8 cut(s) | 51, 242, 410, 680, 734, 1112, 1137, 1551 |