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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 4, 137, 173 |
| AciI | CCGC | 2 cut(s) | 303, 382 |
| AclWI | GGATC | 1 cut(s) | 469 |
| AcsI | RAATTY | 1 cut(s) | 354 |
| AfaI | GTAC | 2 cut(s) | 469, 543 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 115, 151 |
| AgsI | TTSAA | 3 cut(s) | 18, 360, 619 |
| AluBI | AGCT | 5 cut(s) | 44, 313, 322, 571, 624 |
| AluI | AGCT | 5 cut(s) | 44, 313, 322, 571, 624 |
| Alw26I | GTCTC | 2 cut(s) | 271, 495 |
| AlwI | GGATC | 1 cut(s) | 469 |
| ApeKI | GCWGC | 4 cut(s) | 101, 125, 161, 242 |
| ApoI | RAATTY | 1 cut(s) | 354 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 614 |
| AspS9I | GGNCC | 1 cut(s) | 391 |
| AsuHPI | GGTGA | 1 cut(s) | 422 |
| AvaII | GGWCC | 1 cut(s) | 391 |
| BanI | GGYRCC | 3 cut(s) | 4, 137, 173 |
| BanII | GRGCYC | 1 cut(s) | 309 |
| BauI | CACGAG | 1 cut(s) | 33 |
| BbvI | GCAGC | 4 cut(s) | 88, 112, 148, 229 |
| BcoDI | GTCTC | 2 cut(s) | 271, 495 |
| BfmI | CTRYAG | 2 cut(s) | 440, 594 |
| BisI | GCNGC | 4 cut(s) | 102, 126, 162, 243 |
| BlsI | GCNGC | 4 cut(s) | 103, 127, 163, 244 |
| Bme18I | GGWCC | 1 cut(s) | 391 |
| BmgT120I | GGNCC | 1 cut(s) | 391 |
| BmiI | GGNNCC | 4 cut(s) | 6, 139, 175, 601 |
| BmrI | ACTGGG | 1 cut(s) | 372 |
| BmsI | GCATC | 7 cut(s) | 101, 208, 209, 218, 254, 263, 599 |
| BmuI | ACTGGG | 1 cut(s) | 372 |
| Bpu10I | CCTNAGC | 1 cut(s) | 572 |
| BpuEI | CTTGAG | 3 cut(s) | 293, 302, 311 |
| BsaAI | YACGTR | 1 cut(s) | 467 |
| BsaJI | CCNNGG | 1 cut(s) | 373 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 115, 151 |
| Bse1I | ACTGG | 2 cut(s) | 304, 367 |
| BseDI | CCNNGG | 1 cut(s) | 373 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 115, 151 |
| BseNI | ACTGG | 2 cut(s) | 304, 367 |
| BseXI | GCAGC | 4 cut(s) | 88, 112, 148, 229 |
| BsgI | GTGCAG | 2 cut(s) | 15, 479 |
| BshNI | GGYRCC | 3 cut(s) | 4, 137, 173 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 115, 151 |
| BsmAI | GTCTC | 2 cut(s) | 271, 495 |
| BsmBI | CGTCTC | 1 cut(s) | 495 |
| Bsp1286I | GDGCHC | 1 cut(s) | 309 |
| Bsp1407I | TGTACA | 1 cut(s) | 541 |
| Bsp143I | GATC | 2 cut(s) | 74, 474 |
| BspACI | CCGC | 2 cut(s) | 303, 382 |
| BspLI | GGNNCC | 4 cut(s) | 6, 139, 175, 601 |
| BspMAI | CTGCAG | 2 cut(s) | 444, 598 |
| BspPI | GGATC | 1 cut(s) | 469 |
| BspT107I | GGYRCC | 3 cut(s) | 4, 137, 173 |
| BsrGI | TGTACA | 1 cut(s) | 541 |
| BsrI | ACTGG | 2 cut(s) | 304, 367 |
| BssECI | CCNNGG | 1 cut(s) | 373 |
| BssMI | GATC | 2 cut(s) | 74, 474 |
| BssSI | CACGAG | 1 cut(s) | 33 |
| Bst2BI | CACGAG | 1 cut(s) | 33 |
| Bst4CI | ACNGT | 1 cut(s) | 583 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 89, 260 |
| BstAUI | TGTACA | 1 cut(s) | 541 |
| BstBAI | YACGTR | 1 cut(s) | 467 |
| BstC8I | GCNNGC | 2 cut(s) | 305, 462 |
| BstDEI | CTNAG | 3 cut(s) | 111, 147, 572 |
| BstDSI | CCRYGG | 1 cut(s) | 373 |
| BstEII | GGTNACC | 1 cut(s) | 340 |
| BstKTI | GATC | 2 cut(s) | 77, 477 |
| BstMAI | GTCTC | 2 cut(s) | 271, 495 |
| BstMBI | GATC | 2 cut(s) | 74, 474 |
| BstPI | GGTNACC | 1 cut(s) | 340 |
| BstSFI | CTRYAG | 2 cut(s) | 440, 594 |
| BstV1I | GCAGC | 4 cut(s) | 88, 112, 148, 229 |
| BstX2I | RGATCY | 1 cut(s) | 474 |
| BstYI | RGATCY | 1 cut(s) | 474 |
| BtgI | CCRYGG | 1 cut(s) | 373 |
| BtgZI | GCGATG | 1 cut(s) | 80 |
| Cac8I | GCNNGC | 2 cut(s) | 305, 462 |
| Cfr13I | GGNCC | 1 cut(s) | 391 |
| Csp6I | GTAC | 2 cut(s) | 468, 542 |
| CviAII | CATG | 2 cut(s) | 346, 388 |
| CviQI | GTAC | 2 cut(s) | 468, 542 |
| DdeI | CTNAG | 3 cut(s) | 111, 147, 572 |
| DpnI | GATC | 2 cut(s) | 76, 476 |
| DpnII | GATC | 2 cut(s) | 74, 474 |
| Eco24I | GRGCYC | 1 cut(s) | 309 |
| Eco47I | GGWCC | 1 cut(s) | 391 |
| Eco91I | GGTNACC | 1 cut(s) | 340 |
| EcoO65I | GGTNACC | 1 cut(s) | 340 |
| EcoT38I | GRGCYC | 1 cut(s) | 309 |
| Esp3I | CGTCTC | 1 cut(s) | 495 |
| FaeI | CATG | 2 cut(s) | 349, 391 |
| FaiI | YATR | 5 cut(s) | 41, 296, 347, 389, 488 |
| FatI | CATG | 2 cut(s) | 345, 387 |
| FauI | CCCGC | 1 cut(s) | 296 |
| Fnu4HI | GCNGC | 4 cut(s) | 102, 126, 162, 243 |
| FriOI | GRGCYC | 1 cut(s) | 309 |
| Fsp4HI | GCNGC | 4 cut(s) | 102, 126, 162, 243 |
| GluI | GCNGC | 4 cut(s) | 102, 126, 162, 243 |
| Hin1II | CATG | 2 cut(s) | 349, 391 |
| HindIII | AAGCTT | 1 cut(s) | 569 |
| HinfI | GANTC | 1 cut(s) | 349 |
| HphI | GGTGA | 1 cut(s) | 422 |
| Hpy166II | GTNNAC | 2 cut(s) | 377, 413 |
| Hpy188III | TCNNGA | 1 cut(s) | 78 |
| Hpy8I | GTNNAC | 2 cut(s) | 377, 413 |
| HpyAV | CCTTC | 3 cut(s) | 18, 109, 145 |
| HpyCH4III | ACNGT | 1 cut(s) | 583 |
| HpyCH4IV | ACGT | 2 cut(s) | 466, 504 |
| HpyF3I | CTNAG | 3 cut(s) | 111, 147, 572 |
| HpySE526I | ACGT | 2 cut(s) | 466, 504 |
| Hsp92II | CATG | 2 cut(s) | 349, 391 |
| Kzo9I | GATC | 2 cut(s) | 74, 474 |
| LpnPI | CCDG | 5 cut(s) | 285, 348, 446, 530, 582 |
| Lsp1109I | GCAGC | 4 cut(s) | 88, 112, 148, 229 |
| LweI | GCATC | 7 cut(s) | 101, 208, 209, 218, 254, 263, 599 |
| MaeII | ACGT | 2 cut(s) | 466, 504 |
| MaeIII | GTNAC | 2 cut(s) | 25, 340 |
| MalI | GATC | 2 cut(s) | 76, 476 |
| MboI | GATC | 2 cut(s) | 74, 474 |
| MboII | GAAGA | 3 cut(s) | 196, 286, 538 |
| MfeI | CAATTG | 1 cut(s) | 213 |
| MflI | RGATCY | 1 cut(s) | 474 |
| MhlI | GDGCHC | 1 cut(s) | 309 |
| MluCI | AATT | 7 cut(s) | 13, 51, 213, 354, 395, 493, 585 |
| MlyI | GAGTC | 1 cut(s) | 358 |
| MnlI | CCTC | 9 cut(s) | 115, 128, 151, 187, 232, 277, 421, 425, 570 |
| MroXI | GAANNNNTTC | 1 cut(s) | 614 |
| MseI | TTAA | 3 cut(s) | 47, 54, 398 |
| MslI | CAYNNNNRTG | 1 cut(s) | 455 |
| MspA1I | CMGCKG | 1 cut(s) | 382 |
| MunI | CAATTG | 1 cut(s) | 213 |
| NdeII | GATC | 2 cut(s) | 74, 474 |
| NlaIII | CATG | 2 cut(s) | 349, 391 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 139, 175, 601 |
| NmuCI | GTSAC | 1 cut(s) | 25 |
| PdmI | GAANNNNTTC | 1 cut(s) | 614 |
| PkrI | GCNGC | 4 cut(s) | 103, 127, 163, 244 |
| PleI | GAGTC | 1 cut(s) | 357 |
| PpsI | GAGTC | 1 cut(s) | 357 |
| Ppu21I | YACGTR | 1 cut(s) | 467 |
| PspEI | GGTNACC | 1 cut(s) | 340 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 139, 175, 601 |
| PspPI | GGNCC | 1 cut(s) | 391 |
| PstI | CTGCAG | 2 cut(s) | 444, 598 |
| PsuI | RGATCY | 1 cut(s) | 474 |
| RsaI | GTAC | 2 cut(s) | 469, 543 |
| RsaNI | GTAC | 2 cut(s) | 468, 542 |
| RseI | CAYNNNNRTG | 1 cut(s) | 455 |
| SaqAI | TTAA | 3 cut(s) | 47, 54, 398 |
| SatI | GCNGC | 4 cut(s) | 102, 126, 162, 243 |
| Sau3AI | GATC | 2 cut(s) | 74, 474 |
| Sau96I | GGNCC | 1 cut(s) | 391 |
| SchI | GAGTC | 1 cut(s) | 358 |
| SduI | GDGCHC | 1 cut(s) | 309 |
| SfaNI | GCATC | 7 cut(s) | 101, 208, 209, 218, 254, 263, 599 |
| SfcI | CTRYAG | 2 cut(s) | 440, 594 |
| SinI | GGWCC | 1 cut(s) | 391 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 455 |
| SmlI | CTYRAG | 3 cut(s) | 308, 317, 326 |
| SmoI | CTYRAG | 3 cut(s) | 308, 317, 326 |
| Sse9I | AATT | 7 cut(s) | 13, 51, 213, 354, 395, 493, 585 |
| SsiI | CCGC | 2 cut(s) | 303, 382 |
| TaaI | ACNGT | 1 cut(s) | 583 |
| TaiI | ACGT | 2 cut(s) | 469, 507 |
| TaqI | TCGA | 3 cut(s) | 203, 248, 491 |
| TasI | AATT | 7 cut(s) | 13, 51, 213, 354, 395, 493, 585 |
| TatI | WGTACW | 1 cut(s) | 541 |
| Tru1I | TTAA | 3 cut(s) | 47, 54, 398 |
| Tru9I | TTAA | 3 cut(s) | 47, 54, 398 |
| TseFI | GTSAC | 1 cut(s) | 25 |
| TseI | GCWGC | 4 cut(s) | 101, 125, 161, 242 |
| Tsp45I | GTSAC | 1 cut(s) | 25 |
| TspDTI | ATGAA | 3 cut(s) | 83, 376, 439 |
| TspGWI | ACGGA | 1 cut(s) | 362 |
| VpaK11BI | GGWCC | 1 cut(s) | 391 |
| XapI | RAATTY | 1 cut(s) | 354 |
| XmnI | GAANNNNTTC | 1 cut(s) | 614 |