source UniProtKB
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| FAD_binding_4 | PF01565 | 88 - 222 | 5.1e-25 | FAD binding domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 185 |
| Acc16I | TGCGCA | 1 cut(s) | 313 |
| Acc36I | ACCTGC | 1 cut(s) | 185 |
| AccB1I | GGYRCC | 1 cut(s) | 850 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 551 |
| AccII | CGCG | 1 cut(s) | 423 |
| AciI | CCGC | 2 cut(s) | 319, 421 |
| AclWI | GGATC | 1 cut(s) | 1452 |
| AcoI | YGGCCR | 1 cut(s) | 352 |
| AcsI | RAATTY | 1 cut(s) | 1378 |
| AcuI | CTGAAG | 1 cut(s) | 183 |
| AcyI | GRCGYC | 1 cut(s) | 851 |
| AfaI | GTAC | 5 cut(s) | 45, 377, 658, 904, 1361 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 551, 1241 |
| AflII | CTTAAG | 1 cut(s) | 1202 |
| AflIII | ACRYGT | 3 cut(s) | 378, 408, 844 |
| AgeI | ACCGGT | 1 cut(s) | 834 |
| AgsI | TTSAA | 8 cut(s) | 96, 197, 629, 790, 1031, 1192, 1313, 1520 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 673 |
| AhlI | ACTAGT | 2 cut(s) | 640, 905 |
| AjnI | CCWGG | 1 cut(s) | 1109 |
| AluBI | AGCT | 6 cut(s) | 533, 726, 757, 970, 1198, 1368 |
| AluI | AGCT | 6 cut(s) | 533, 726, 757, 970, 1198, 1368 |
| Alw26I | GTCTC | 2 cut(s) | 144, 163 |
| AlwI | GGATC | 1 cut(s) | 1452 |
| AoxI | GGCC | 7 cut(s) | 352, 699, 1106, 1115, 1347, 1425, 1458 |
| ApeKI | GCWGC | 1 cut(s) | 533 |
| ApoI | RAATTY | 1 cut(s) | 1378 |
| AsiGI | ACCGGT | 1 cut(s) | 834 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 201, 1161 |
| AspLEI | GCGC | 4 cut(s) | 314, 425, 818, 853 |
| AspS9I | GGNCC | 6 cut(s) | 542, 699, 801, 1107, 1115, 1458 |
| AsuHPI | GGTGA | 4 cut(s) | 494, 790, 1061, 1277 |
| AvaII | GGWCC | 2 cut(s) | 542, 801 |
| BalI | TGGCCA | 1 cut(s) | 354 |
| BanI | GGYRCC | 1 cut(s) | 850 |
| BanII | GRGCYC | 2 cut(s) | 612, 1235 |
| BbsI | GAAGAC | 2 cut(s) | 865, 986 |
| BbvI | GCAGC | 1 cut(s) | 520 |
| BccI | CCATC | 2 cut(s) | 1201, 1487 |
| BciT130I | CCWGG | 1 cut(s) | 1111 |
| BclI | TGATCA | 1 cut(s) | 1066 |
| BcoDI | GTCTC | 2 cut(s) | 144, 163 |
| BcuI | ACTAGT | 2 cut(s) | 640, 905 |
| BfaI | CTAG | 4 cut(s) | 641, 906, 1374, 1494 |
| BfmI | CTRYAG | 3 cut(s) | 33, 819, 1438 |
| BfoI | RGCGCY | 2 cut(s) | 819, 854 |
| BfrI | CTTAAG | 1 cut(s) | 1202 |
| BfuAI | ACCTGC | 1 cut(s) | 185 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1114 |
| BglII | AGATCT | 1 cut(s) | 688 |
| BisI | GCNGC | 2 cut(s) | 320, 534 |
| BlsI | GCNGC | 2 cut(s) | 321, 535 |
| BmcAI | AGTACT | 2 cut(s) | 45, 904 |
| Bme1390I | CCNGG | 1 cut(s) | 1111 |
| Bme18I | GGWCC | 2 cut(s) | 542, 801 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 673 |
| BmgT120I | GGNCC | 6 cut(s) | 542, 699, 801, 1107, 1115, 1458 |
| BmiI | GGNNCC | 5 cut(s) | 803, 852, 1116, 1232, 1459 |
| BmrFI | CCNGG | 1 cut(s) | 1111 |
| BmrI | ACTGGG | 1 cut(s) | 1067 |
| BmsI | GCATC | 2 cut(s) | 622, 1212 |
| BmuI | ACTGGG | 1 cut(s) | 1067 |
| BpiI | GAAGAC | 2 cut(s) | 865, 986 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1364 |
| BpuEI | CTTGAG | 2 cut(s) | 827, 876 |
| BsaAI | YACGTR | 2 cut(s) | 379, 1150 |
| BsaBI | GATNNNNATC | 1 cut(s) | 338 |
| BsaHI | GRCGYC | 1 cut(s) | 851 |
| BsaJI | CCNNGG | 4 cut(s) | 257, 774, 1109, 1110 |
| BsaWI | WCCGGW | 1 cut(s) | 834 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 551, 1241 |
| Bse118I | RCCGGY | 1 cut(s) | 834 |
| Bse1I | ACTGG | 3 cut(s) | 544, 764, 1073 |
| Bse3DI | GCAATG | 3 cut(s) | 891, 1232, 1488 |
| Bse8I | GATNNNNATC | 1 cut(s) | 338 |
| BseBI | CCWGG | 1 cut(s) | 1111 |
| BseDI | CCNNGG | 4 cut(s) | 257, 774, 1109, 1110 |
| BseGI | GGATG | 2 cut(s) | 1069, 1227 |
| BseJI | GATNNNNATC | 1 cut(s) | 338 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 551, 1241 |
| BseMI | GCAATG | 3 cut(s) | 891, 1232, 1488 |
| BseMII | CTCAG | 2 cut(s) | 87, 587 |
| BseNI | ACTGG | 3 cut(s) | 544, 764, 1073 |
| BseRI | GAGGAG | 1 cut(s) | 723 |
| BseXI | GCAGC | 1 cut(s) | 520 |
| BsgI | GTGCAG | 1 cut(s) | 597 |
| Bsh1236I | CGCG | 1 cut(s) | 423 |
| BshFI | GGCC | 7 cut(s) | 354, 701, 1108, 1117, 1349, 1427, 1460 |
| BshNI | GGYRCC | 1 cut(s) | 850 |
| BshTI | ACCGGT | 1 cut(s) | 834 |
| BsiSI | CCGG | 2 cut(s) | 835, 1293 |
| BsiWI | CGTACG | 1 cut(s) | 375 |
| BslFI | GGGAC | 2 cut(s) | 374, 969 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 551, 1241 |
| BsmAI | GTCTC | 2 cut(s) | 144, 163 |
| BsmBI | CGTCTC | 1 cut(s) | 163 |
| BsmFI | GGGAC | 2 cut(s) | 374, 969 |
| BsnI | GGCC | 7 cut(s) | 354, 701, 1108, 1117, 1349, 1427, 1460 |
| Bsp1286I | GDGCHC | 2 cut(s) | 612, 1235 |
| Bsp143I | GATC | 4 cut(s) | 306, 688, 1066, 1444 |
| Bsp19I | CCATGG | 1 cut(s) | 257 |
| BspACI | CCGC | 2 cut(s) | 319, 421 |
| BspANI | GGCC | 7 cut(s) | 354, 701, 1108, 1117, 1349, 1427, 1460 |
| BspCNI | CTCAG | 2 cut(s) | 86, 588 |
| BspFNI | CGCG | 1 cut(s) | 423 |
| BspHI | TCATGA | 1 cut(s) | 1305 |
| BspLI | GGNNCC | 5 cut(s) | 803, 852, 1116, 1232, 1459 |
| BspMI | ACCTGC | 1 cut(s) | 185 |
| BspPI | GGATC | 1 cut(s) | 1452 |
| BspT107I | GGYRCC | 1 cut(s) | 850 |
| BspTI | CTTAAG | 1 cut(s) | 1202 |
| BsrDI | GCAATG | 3 cut(s) | 891, 1232, 1488 |
| BsrFI | RCCGGY | 1 cut(s) | 834 |
| BsrI | ACTGG | 3 cut(s) | 544, 764, 1073 |
| BssAI | RCCGGY | 1 cut(s) | 834 |
| BssECI | CCNNGG | 4 cut(s) | 257, 774, 1109, 1110 |
| BssMI | GATC | 4 cut(s) | 306, 688, 1066, 1444 |
| BssNI | GRCGYC | 1 cut(s) | 851 |
| BssT1I | CCWWGG | 2 cut(s) | 257, 774 |
| Bst2UI | CCWGG | 1 cut(s) | 1111 |
| Bst4CI | ACNGT | 6 cut(s) | 138, 304, 550, 616, 784, 1054 |
| Bst6I | CTCTTC | 1 cut(s) | 53 |
| BstACI | GRCGYC | 1 cut(s) | 851 |
| BstAFI | CTTAAG | 1 cut(s) | 1202 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 328 |
| BstBAI | YACGTR | 2 cut(s) | 379, 1150 |
| BstC8I | GCNNGC | 4 cut(s) | 210, 297, 724, 771 |
| BstDEI | CTNAG | 3 cut(s) | 73, 596, 1364 |
| BstDSI | CCRYGG | 1 cut(s) | 257 |
| BstF5I | GGATG | 2 cut(s) | 1069, 1227 |
| BstFNI | CGCG | 1 cut(s) | 423 |
| BstH2I | RGCGCY | 2 cut(s) | 819, 854 |
| BstHHI | GCGC | 4 cut(s) | 314, 425, 818, 853 |
| BstKTI | GATC | 4 cut(s) | 309, 691, 1069, 1447 |
| BstMAI | GTCTC | 2 cut(s) | 144, 163 |
| BstMBI | GATC | 4 cut(s) | 306, 688, 1066, 1444 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 328, 1114 |
| BstNI | CCWGG | 1 cut(s) | 1111 |
| BstNSI | RCATGY | 2 cut(s) | 412, 848 |
| BstSCI | CCNGG | 1 cut(s) | 1109 |
| BstSFI | CTRYAG | 3 cut(s) | 33, 819, 1438 |
| BstUI | CGCG | 1 cut(s) | 423 |
| BstV1I | GCAGC | 1 cut(s) | 520 |
| BstV2I | GAAGAC | 2 cut(s) | 865, 986 |
| BstX2I | RGATCY | 2 cut(s) | 688, 1444 |
| BstYI | RGATCY | 2 cut(s) | 688, 1444 |
| BsuRI | GGCC | 7 cut(s) | 354, 701, 1108, 1117, 1349, 1427, 1460 |
| BtgI | CCRYGG | 1 cut(s) | 257 |
| BtsCI | GGATG | 2 cut(s) | 1069, 1227 |
| BtsIMutI | CAGTG | 3 cut(s) | 621, 771, 977 |
| BveI | ACCTGC | 1 cut(s) | 185 |
| Cac8I | GCNNGC | 4 cut(s) | 210, 297, 724, 771 |
| CciI | TCATGA | 1 cut(s) | 1305 |
| CfoI | GCGC | 4 cut(s) | 314, 425, 818, 853 |
| Cfr10I | RCCGGY | 1 cut(s) | 834 |
| Cfr13I | GGNCC | 6 cut(s) | 542, 699, 801, 1107, 1115, 1458 |
| Csp6I | GTAC | 5 cut(s) | 44, 376, 657, 903, 1360 |
| CspAI | ACCGGT | 1 cut(s) | 834 |
| CviQI | GTAC | 5 cut(s) | 44, 376, 657, 903, 1360 |
| DdeI | CTNAG | 3 cut(s) | 73, 596, 1364 |
| DinI | GGCGCC | 1 cut(s) | 852 |
| DpnI | GATC | 4 cut(s) | 308, 690, 1068, 1446 |
| DpnII | GATC | 4 cut(s) | 306, 688, 1066, 1444 |
| DriI | GACNNNNNGTC | 1 cut(s) | 673 |
| EaeI | YGGCCR | 1 cut(s) | 352 |
| Eam1104I | CTCTTC | 1 cut(s) | 53 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 673 |
| EarI | CTCTTC | 1 cut(s) | 53 |
| Eco130I | CCWWGG | 2 cut(s) | 257, 774 |
| Eco147I | AGGCCT | 1 cut(s) | 1427 |
| Eco24I | GRGCYC | 2 cut(s) | 612, 1235 |
| Eco32I | GATATC | 1 cut(s) | 439 |
| Eco47I | GGWCC | 2 cut(s) | 542, 801 |
| Eco57I | CTGAAG | 1 cut(s) | 183 |
| EcoO109I | RGGNCCY | 1 cut(s) | 801 |
| EcoRII | CCWGG | 1 cut(s) | 1109 |
| EcoRV | GATATC | 1 cut(s) | 439 |
| EcoT14I | CCWWGG | 2 cut(s) | 257, 774 |
| EcoT38I | GRGCYC | 2 cut(s) | 612, 1235 |
| EgeI | GGCGCC | 1 cut(s) | 852 |
| EheI | GGCGCC | 1 cut(s) | 852 |
| ErhI | CCWWGG | 2 cut(s) | 257, 774 |
| Esp3I | CGTCTC | 1 cut(s) | 163 |
| FaqI | GGGAC | 2 cut(s) | 374, 969 |
| FauNDI | CATATG | 1 cut(s) | 385 |
| FbaI | TGATCA | 1 cut(s) | 1066 |
| Fnu4HI | GCNGC | 2 cut(s) | 320, 534 |
| FokI | GGATG | 2 cut(s) | 1076, 1234 |
| FriOI | GRGCYC | 2 cut(s) | 612, 1235 |
| Fsp4HI | GCNGC | 2 cut(s) | 320, 534 |
| FspBI | CTAG | 4 cut(s) | 641, 906, 1374, 1494 |
| FspI | TGCGCA | 1 cut(s) | 313 |
| GlaI | GCGC | 4 cut(s) | 313, 424, 817, 852 |
| GluI | GCNGC | 2 cut(s) | 320, 534 |
| HaeII | RGCGCY | 2 cut(s) | 819, 854 |
| HaeIII | GGCC | 7 cut(s) | 354, 701, 1108, 1117, 1349, 1427, 1460 |
| HapII | CCGG | 2 cut(s) | 835, 1293 |
| HhaI | GCGC | 4 cut(s) | 314, 425, 818, 853 |
| Hin1I | GRCGYC | 1 cut(s) | 851 |
| Hin6I | GCGC | 4 cut(s) | 312, 423, 816, 851 |
| HinP1I | GCGC | 4 cut(s) | 312, 423, 816, 851 |
| HindIII | AAGCTT | 1 cut(s) | 724 |
| HpaII | CCGG | 2 cut(s) | 835, 1293 |
| HphI | GGTGA | 4 cut(s) | 494, 790, 1061, 1277 |
| Hpy166II | GTNNAC | 1 cut(s) | 485 |
| Hpy188III | TCNNGA | 8 cut(s) | 107, 131, 404, 665, 998, 1306, 1374, 1448 |
| Hpy8I | GTNNAC | 1 cut(s) | 485 |
| HpyAV | CCTTC | 7 cut(s) | 137, 792, 1186, 1288, 1331, 1438, 1514 |
| HpyCH4III | ACNGT | 6 cut(s) | 138, 304, 550, 616, 784, 1054 |
| HpyCH4IV | ACGT | 2 cut(s) | 378, 1149 |
| HpyCH4V | TGCA | 7 cut(s) | 295, 331, 503, 536, 578, 1012, 1225 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 328, 1114 |
| HpyF3I | CTNAG | 3 cut(s) | 73, 596, 1364 |
| HpySE526I | ACGT | 2 cut(s) | 378, 1149 |
| Hsp92I | GRCGYC | 1 cut(s) | 851 |
| HspAI | GCGC | 4 cut(s) | 312, 423, 816, 851 |
| KasI | GGCGCC | 1 cut(s) | 850 |
| Ksp22I | TGATCA | 1 cut(s) | 1066 |
| Kzo9I | GATC | 4 cut(s) | 306, 688, 1066, 1444 |
| LmnI | GCTCC | 3 cut(s) | 719, 1195, 1230 |
| Lsp1109I | GCAGC | 1 cut(s) | 520 |
| LweI | GCATC | 2 cut(s) | 622, 1212 |
| MaeI | CTAG | 4 cut(s) | 641, 906, 1374, 1494 |
| MaeII | ACGT | 2 cut(s) | 378, 1149 |
| MaeIII | GTNAC | 4 cut(s) | 21, 268, 778, 914 |
| MalI | GATC | 4 cut(s) | 308, 690, 1068, 1446 |
| MboI | GATC | 4 cut(s) | 306, 688, 1066, 1444 |
| MboII | GAAGA | 9 cut(s) | 40, 641, 698, 865, 940, 986, 1257, 1343, 1346 |
| MflI | RGATCY | 2 cut(s) | 688, 1444 |
| MhlI | GDGCHC | 2 cut(s) | 612, 1235 |
| MlsI | TGGCCA | 1 cut(s) | 354 |
| MluCI | AATT | 7 cut(s) | 498, 660, 1001, 1161, 1378, 1462, 1525 |
| MluNI | TGGCCA | 1 cut(s) | 354 |
| Mly113I | GGCGCC | 1 cut(s) | 851 |
| MlyI | GAGTC | 5 cut(s) | 473, 741, 1000, 1390, 1506 |
| MmeI | TCCRAC | 3 cut(s) | 171, 569, 1057 |
| MnlI | CCTC | 9 cut(s) | 128, 358, 428, 701, 704, 900, 1293, 1339, 1417 |
| Mox20I | TGGCCA | 1 cut(s) | 354 |
| MroXI | GAANNNNTTC | 2 cut(s) | 201, 1161 |
| MscI | TGGCCA | 1 cut(s) | 354 |
| MseI | TTAA | 4 cut(s) | 414, 645, 1203, 1485 |
| MslI | CAYNNNNRTG | 1 cut(s) | 570 |
| Msp20I | TGGCCA | 1 cut(s) | 354 |
| MspA1I | CMGCKG | 1 cut(s) | 533 |
| MspCI | CTTAAG | 1 cut(s) | 1202 |
| MspI | CCGG | 2 cut(s) | 835, 1293 |
| MspR9I | CCNGG | 1 cut(s) | 1111 |
| MvaI | CCWGG | 1 cut(s) | 1111 |
| MvnI | CGCG | 1 cut(s) | 423 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 328, 1114 |
| NarI | GGCGCC | 1 cut(s) | 851 |
| NcoI | CCATGG | 1 cut(s) | 257 |
| NdeI | CATATG | 1 cut(s) | 385 |
| NdeII | GATC | 4 cut(s) | 306, 688, 1066, 1444 |
| NlaIV | GGNNCC | 5 cut(s) | 803, 852, 1116, 1232, 1459 |
| NmuCI | GTSAC | 1 cut(s) | 778 |
| NsbI | TGCGCA | 1 cut(s) | 313 |
| NspI | RCATGY | 2 cut(s) | 412, 848 |
| PagI | TCATGA | 1 cut(s) | 1305 |
| PaqCI | CACCTGC | 1 cut(s) | 185 |
| PasI | CCCWGGG | 1 cut(s) | 1110 |
| PceI | AGGCCT | 1 cut(s) | 1427 |
| PciI | ACATGT | 2 cut(s) | 408, 844 |
| PdmI | GAANNNNTTC | 2 cut(s) | 201, 1161 |
| PfeI | GAWTC | 6 cut(s) | 77, 197, 284, 339, 1046, 1309 |
| Pfl23II | CGTACG | 1 cut(s) | 375 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 551 |
| PinAI | ACCGGT | 1 cut(s) | 834 |
| PkrI | GCNGC | 2 cut(s) | 321, 535 |
| PleI | GAGTC | 5 cut(s) | 472, 740, 999, 1390, 1505 |
| PluTI | GGCGCC | 1 cut(s) | 854 |
| PpsI | GAGTC | 5 cut(s) | 472, 740, 999, 1390, 1505 |
| Ppu21I | YACGTR | 2 cut(s) | 379, 1150 |
| PpuMI | RGGWCCY | 1 cut(s) | 801 |
| PscI | ACATGT | 2 cut(s) | 408, 844 |
| Psp5II | RGGWCCY | 1 cut(s) | 801 |
| Psp6I | CCWGG | 1 cut(s) | 1109 |
| PspGI | CCWGG | 1 cut(s) | 1109 |
| PspLI | CGTACG | 1 cut(s) | 375 |
| PspN4I | GGNNCC | 5 cut(s) | 803, 852, 1116, 1232, 1459 |
| PspPI | GGNCC | 6 cut(s) | 542, 699, 801, 1107, 1115, 1458 |
| PspPPI | RGGWCCY | 1 cut(s) | 801 |
| PsuI | RGATCY | 2 cut(s) | 688, 1444 |
| PvuII | CAGCTG | 1 cut(s) | 533 |
| RsaI | GTAC | 5 cut(s) | 45, 377, 658, 904, 1361 |
| RsaNI | GTAC | 5 cut(s) | 44, 376, 657, 903, 1360 |
| RseI | CAYNNNNRTG | 1 cut(s) | 570 |
| SaqAI | TTAA | 4 cut(s) | 414, 645, 1203, 1485 |
| SatI | GCNGC | 2 cut(s) | 320, 534 |
| Sau3AI | GATC | 4 cut(s) | 306, 688, 1066, 1444 |
| Sau96I | GGNCC | 6 cut(s) | 542, 699, 801, 1107, 1115, 1458 |
| ScaI | AGTACT | 2 cut(s) | 45, 904 |
| SchI | GAGTC | 5 cut(s) | 473, 741, 1000, 1390, 1506 |
| ScrFI | CCNGG | 1 cut(s) | 1111 |
| SduI | GDGCHC | 2 cut(s) | 612, 1235 |
| SfaNI | GCATC | 2 cut(s) | 622, 1212 |
| SfcI | CTRYAG | 3 cut(s) | 33, 819, 1438 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1114 |
| SfoI | GGCGCC | 1 cut(s) | 852 |
| SinI | GGWCC | 2 cut(s) | 542, 801 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 570 |
| SmlI | CTYRAG | 3 cut(s) | 806, 891, 1202 |
| SmoI | CTYRAG | 3 cut(s) | 806, 891, 1202 |
| SpeI | ACTAGT | 2 cut(s) | 640, 905 |
| Sse9I | AATT | 7 cut(s) | 498, 660, 1001, 1161, 1378, 1462, 1525 |
| SseBI | AGGCCT | 1 cut(s) | 1427 |
| SsiI | CCGC | 2 cut(s) | 319, 421 |
| SspDI | GGCGCC | 1 cut(s) | 850 |
| SspI | AATATT | 1 cut(s) | 1316 |
| SspMI | CTAG | 4 cut(s) | 641, 906, 1374, 1494 |
| StuI | AGGCCT | 1 cut(s) | 1427 |
| StyD4I | CCNGG | 1 cut(s) | 1109 |
| StyI | CCWWGG | 2 cut(s) | 257, 774 |
| TaaI | ACNGT | 6 cut(s) | 138, 304, 550, 616, 784, 1054 |
| TaiI | ACGT | 2 cut(s) | 381, 1152 |
| TaqI | TCGA | 2 cut(s) | 108, 1101 |
| TasI | AATT | 7 cut(s) | 498, 660, 1001, 1161, 1378, 1462, 1525 |
| TatI | WGTACW | 2 cut(s) | 43, 902 |
| TauI | GCSGC | 1 cut(s) | 322 |
| TfiI | GAWTC | 6 cut(s) | 77, 197, 284, 339, 1046, 1309 |
| Tru1I | TTAA | 4 cut(s) | 414, 645, 1203, 1485 |
| Tru9I | TTAA | 4 cut(s) | 414, 645, 1203, 1485 |
| TscAI | CASTG | 3 cut(s) | 621, 771, 984 |
| TseFI | GTSAC | 1 cut(s) | 778 |
| TseI | GCWGC | 1 cut(s) | 533 |
| Tsp45I | GTSAC | 1 cut(s) | 778 |
| TspGWI | ACGGA | 2 cut(s) | 145, 190 |
| TspRI | CASTG | 3 cut(s) | 621, 771, 984 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 551 |
| Vha464I | CTTAAG | 1 cut(s) | 1202 |
| VpaK11BI | GGWCC | 2 cut(s) | 542, 801 |
| XapI | RAATTY | 1 cut(s) | 1378 |
| XbaI | TCTAGA | 1 cut(s) | 1373 |
| XceI | RCATGY | 2 cut(s) | 412, 848 |
| XmnI | GAANNNNTTC | 2 cut(s) | 201, 1161 |
| XspI | CTAG | 4 cut(s) | 641, 906, 1374, 1494 |
| ZrmI | AGTACT | 2 cut(s) | 45, 904 |