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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1719 |
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AccII | CGCG | 1 cut(s) | 16 |
| AciI | CCGC | 1 cut(s) | 529 |
| AclI | AACGTT | 1 cut(s) | 1473 |
| AclWI | GGATC | 3 cut(s) | 96, 797, 821 |
| AcoI | YGGCCR | 1 cut(s) | 45 |
| AcsI | RAATTY | 3 cut(s) | 63, 1345, 1415 |
| AcuI | CTGAAG | 2 cut(s) | 114, 230 |
| AfaI | GTAC | 4 cut(s) | 135, 624, 722, 1575 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1191, 1337 |
| AflII | CTTAAG | 1 cut(s) | 685 |
| AjiI | CACGTC | 1 cut(s) | 800 |
| AjnI | CCWGG | 1 cut(s) | 1404 |
| Alw26I | GTCTC | 3 cut(s) | 246, 247, 1385 |
| AlwI | GGATC | 3 cut(s) | 96, 797, 821 |
| AoxI | GGCC | 3 cut(s) | 45, 846, 1664 |
| ApeKI | GCWGC | 3 cut(s) | 140, 989, 1238 |
| ApoI | RAATTY | 3 cut(s) | 63, 1345, 1415 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 459, 491 |
| AseI | ATTAAT | 1 cut(s) | 597 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 22 |
| AsuHPI | GGTGA | 1 cut(s) | 1424 |
| BalI | TGGCCA | 1 cut(s) | 47 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BauI | CACGAG | 1 cut(s) | 1382 |
| BbsI | GAAGAC | 2 cut(s) | 25, 1130 |
| BbvCI | CCTCAGC | 1 cut(s) | 882 |
| BbvI | GCAGC | 3 cut(s) | 127, 976, 1225 |
| BccI | CCATC | 1 cut(s) | 1331 |
| BciT130I | CCWGG | 1 cut(s) | 1406 |
| BciVI | GTATCC | 1 cut(s) | 705 |
| BcoDI | GTCTC | 3 cut(s) | 246, 247, 1385 |
| BfaI | CTAG | 4 cut(s) | 87, 650, 1088, 1583 |
| BfrI | CTTAAG | 1 cut(s) | 685 |
| BfuI | GTATCC | 1 cut(s) | 705 |
| BisI | GCNGC | 3 cut(s) | 141, 990, 1239 |
| BlsI | GCNGC | 3 cut(s) | 142, 991, 1240 |
| Bme1390I | CCNGG | 1 cut(s) | 1406 |
| BmgBI | CACGTC | 1 cut(s) | 800 |
| BmiI | GGNNCC | 3 cut(s) | 6, 369, 1311 |
| BmrFI | CCNGG | 1 cut(s) | 1406 |
| BmrI | ACTGGG | 1 cut(s) | 619 |
| BmsI | GCATC | 2 cut(s) | 152, 1630 |
| BmuI | ACTGGG | 1 cut(s) | 619 |
| BpiI | GAAGAC | 2 cut(s) | 25, 1130 |
| Bpu10I | CCTNAGC | 2 cut(s) | 882, 942 |
| BpuEI | CTTGAG | 1 cut(s) | 15 |
| Bsa29I | ATCGAT | 1 cut(s) | 1568 |
| BsaAI | YACGTR | 1 cut(s) | 713 |
| BsaI | GGTCTC | 1 cut(s) | 1385 |
| BsaJI | CCNNGG | 1 cut(s) | 1531 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1103, 1133 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1191, 1337 |
| Bse1I | ACTGG | 3 cut(s) | 614, 955, 1688 |
| Bse3DI | GCAATG | 1 cut(s) | 48 |
| BseBI | CCWGG | 1 cut(s) | 1406 |
| BseCI | ATCGAT | 1 cut(s) | 1568 |
| BseDI | CCNNGG | 1 cut(s) | 1531 |
| BseGI | GGATG | 4 cut(s) | 282, 400, 763, 1594 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1191, 1337 |
| BseMI | GCAATG | 1 cut(s) | 48 |
| BseMII | CTCAG | 4 cut(s) | 62, 498, 873, 933 |
| BseNI | ACTGG | 3 cut(s) | 614, 955, 1688 |
| BseRI | GAGGAG | 3 cut(s) | 854, 1127, 1322 |
| BseXI | GCAGC | 3 cut(s) | 127, 976, 1225 |
| Bsh1236I | CGCG | 1 cut(s) | 16 |
| BshFI | GGCC | 3 cut(s) | 47, 848, 1666 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BshVI | ATCGAT | 1 cut(s) | 1568 |
| BslFI | GGGAC | 2 cut(s) | 91, 1663 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1191, 1337 |
| BsmAI | GTCTC | 3 cut(s) | 246, 247, 1385 |
| BsmBI | CGTCTC | 1 cut(s) | 247 |
| BsmFI | GGGAC | 2 cut(s) | 91, 1663 |
| BsmI | GAATGC | 1 cut(s) | 1357 |
| BsnI | GGCC | 3 cut(s) | 47, 848, 1666 |
| Bso31I | GGTCTC | 1 cut(s) | 1385 |
| Bsp1407I | TGTACA | 1 cut(s) | 622 |
| Bsp143I | GATC | 5 cut(s) | 101, 772, 789, 826, 1393 |
| Bsp19I | CCATGG | 1 cut(s) | 1531 |
| BspACI | CCGC | 1 cut(s) | 529 |
| BspANI | GGCC | 3 cut(s) | 47, 848, 1666 |
| BspCNI | CTCAG | 4 cut(s) | 63, 497, 874, 934 |
| BspDI | ATCGAT | 1 cut(s) | 1568 |
| BspFNI | CGCG | 1 cut(s) | 16 |
| BspLI | GGNNCC | 3 cut(s) | 6, 369, 1311 |
| BspPI | GGATC | 3 cut(s) | 96, 797, 821 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BspTI | CTTAAG | 1 cut(s) | 685 |
| BspTNI | GGTCTC | 1 cut(s) | 1385 |
| BsrDI | GCAATG | 1 cut(s) | 48 |
| BsrGI | TGTACA | 1 cut(s) | 622 |
| BsrI | ACTGG | 3 cut(s) | 614, 955, 1688 |
| BssECI | CCNNGG | 1 cut(s) | 1531 |
| BssMI | GATC | 5 cut(s) | 101, 772, 789, 826, 1393 |
| BssSI | CACGAG | 1 cut(s) | 1382 |
| BssT1I | CCWWGG | 1 cut(s) | 1531 |
| Bst2BI | CACGAG | 1 cut(s) | 1382 |
| Bst2UI | CCWGG | 1 cut(s) | 1406 |
| Bst4CI | ACNGT | 5 cut(s) | 283, 744, 1273, 1492, 1633 |
| BstAFI | CTTAAG | 1 cut(s) | 685 |
| BstAUI | TGTACA | 1 cut(s) | 622 |
| BstBAI | YACGTR | 1 cut(s) | 713 |
| BstC8I | GCNNGC | 3 cut(s) | 358, 987, 1523 |
| BstDEI | CTNAG | 5 cut(s) | 71, 484, 882, 942, 1040 |
| BstDSI | CCRYGG | 1 cut(s) | 1531 |
| BstF5I | GGATG | 4 cut(s) | 282, 400, 763, 1594 |
| BstFNI | CGCG | 1 cut(s) | 16 |
| BstKTI | GATC | 5 cut(s) | 104, 775, 792, 829, 1396 |
| BstMAI | GTCTC | 3 cut(s) | 246, 247, 1385 |
| BstMBI | GATC | 5 cut(s) | 101, 772, 789, 826, 1393 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1244 |
| BstNI | CCWGG | 1 cut(s) | 1406 |
| BstNSI | RCATGY | 1 cut(s) | 1561 |
| BstSCI | CCNGG | 1 cut(s) | 1404 |
| BstUI | CGCG | 1 cut(s) | 16 |
| BstV1I | GCAGC | 3 cut(s) | 127, 976, 1225 |
| BstV2I | GAAGAC | 2 cut(s) | 25, 1130 |
| BstX2I | RGATCY | 1 cut(s) | 826 |
| BstYI | RGATCY | 1 cut(s) | 826 |
| Bsu15I | ATCGAT | 1 cut(s) | 1568 |
| BsuI | GTATCC | 1 cut(s) | 705 |
| BsuRI | GGCC | 3 cut(s) | 47, 848, 1666 |
| BsuTUI | ATCGAT | 1 cut(s) | 1568 |
| BtgI | CCRYGG | 1 cut(s) | 1531 |
| BtrI | CACGTC | 1 cut(s) | 800 |
| BtsCI | GGATG | 4 cut(s) | 282, 400, 763, 1594 |
| BtsIMutI | CAGTG | 1 cut(s) | 1269 |
| Cac8I | GCNNGC | 3 cut(s) | 358, 987, 1523 |
| ClaI | ATCGAT | 1 cut(s) | 1568 |
| CseI | GACGC | 1 cut(s) | 443 |
| Csp6I | GTAC | 4 cut(s) | 134, 623, 721, 1574 |
| CviAII | CATG | 7 cut(s) | 387, 659, 784, 1229, 1301, 1532, 1558 |
| CviQI | GTAC | 4 cut(s) | 134, 623, 721, 1574 |
| DdeI | CTNAG | 5 cut(s) | 71, 484, 882, 942, 1040 |
| DpnI | GATC | 5 cut(s) | 103, 774, 791, 828, 1395 |
| DpnII | GATC | 5 cut(s) | 101, 772, 789, 826, 1393 |
| DraI | TTTAAA | 1 cut(s) | 823 |
| EaeI | YGGCCR | 1 cut(s) | 45 |
| Eco130I | CCWWGG | 1 cut(s) | 1531 |
| Eco31I | GGTCTC | 1 cut(s) | 1385 |
| Eco57I | CTGAAG | 2 cut(s) | 114, 230 |
| EcoRII | CCWGG | 1 cut(s) | 1404 |
| EcoT14I | CCWWGG | 1 cut(s) | 1531 |
| EcoT22I | ATGCAT | 1 cut(s) | 1230 |
| ErhI | CCWWGG | 1 cut(s) | 1531 |
| Esp3I | CGTCTC | 1 cut(s) | 247 |
| FaeI | CATG | 7 cut(s) | 390, 662, 787, 1232, 1304, 1535, 1561 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 112, 144, 753, 785, 1584, 1616 |
| FaqI | GGGAC | 2 cut(s) | 91, 1663 |
| FatI | CATG | 7 cut(s) | 386, 658, 783, 1228, 1300, 1531, 1557 |
| FauI | CCCGC | 1 cut(s) | 536 |
| Fnu4HI | GCNGC | 3 cut(s) | 141, 990, 1239 |
| FokI | GGATG | 4 cut(s) | 289, 407, 770, 1601 |
| Fsp4HI | GCNGC | 3 cut(s) | 141, 990, 1239 |
| FspBI | CTAG | 4 cut(s) | 87, 650, 1088, 1583 |
| GluI | GCNGC | 3 cut(s) | 141, 990, 1239 |
| HaeIII | GGCC | 3 cut(s) | 47, 848, 1666 |
| HgaI | GACGC | 1 cut(s) | 443 |
| Hin1II | CATG | 7 cut(s) | 390, 662, 787, 1232, 1304, 1535, 1561 |
| HincII | GTYRAC | 1 cut(s) | 921 |
| HindII | GTYRAC | 1 cut(s) | 921 |
| HindIII | AAGCTT | 1 cut(s) | 1598 |
| HinfI | GANTC | 9 cut(s) | 514, 569, 641, 1036, 1150, 1166, 1178, 1261, 1327 |
| HpaI | GTTAAC | 1 cut(s) | 921 |
| HphI | GGTGA | 1 cut(s) | 1424 |
| Hpy166II | GTNNAC | 1 cut(s) | 921 |
| Hpy188I | TCNGA | 3 cut(s) | 640, 910, 1056 |
| Hpy8I | GTNNAC | 1 cut(s) | 921 |
| HpyCH4III | ACNGT | 5 cut(s) | 283, 744, 1273, 1492, 1633 |
| HpyCH4IV | ACGT | 4 cut(s) | 712, 799, 1127, 1473 |
| HpyCH4V | TGCA | 7 cut(s) | 143, 334, 749, 779, 992, 1228, 1487 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1244 |
| HpyF3I | CTNAG | 5 cut(s) | 71, 484, 882, 942, 1040 |
| HpySE526I | ACGT | 4 cut(s) | 712, 799, 1127, 1473 |
| Hsp92II | CATG | 7 cut(s) | 390, 662, 787, 1232, 1304, 1535, 1561 |
| KspAI | GTTAAC | 1 cut(s) | 921 |
| Kzo9I | GATC | 5 cut(s) | 101, 772, 789, 826, 1393 |
| LmnI | GCTCC | 3 cut(s) | 110, 491, 1309 |
| Lsp1109I | GCAGC | 3 cut(s) | 127, 976, 1225 |
| LweI | GCATC | 2 cut(s) | 152, 1630 |
| MaeI | CTAG | 4 cut(s) | 87, 650, 1088, 1583 |
| MaeII | ACGT | 4 cut(s) | 712, 799, 1127, 1473 |
| MaeIII | GTNAC | 4 cut(s) | 232, 708, 1159, 1702 |
| MalI | GATC | 5 cut(s) | 103, 774, 791, 828, 1395 |
| MboI | GATC | 5 cut(s) | 101, 772, 789, 826, 1393 |
| MboII | GAAGA | 5 cut(s) | 30, 749, 880, 1093, 1135 |
| MfeI | CAATTG | 3 cut(s) | 1248, 1374, 1431 |
| MflI | RGATCY | 1 cut(s) | 826 |
| MlsI | TGGCCA | 1 cut(s) | 47 |
| MluNI | TGGCCA | 1 cut(s) | 47 |
| MlyI | GAGTC | 3 cut(s) | 523, 635, 1045 |
| Mox20I | TGGCCA | 1 cut(s) | 47 |
| Mph1103I | ATGCAT | 1 cut(s) | 1230 |
| MroXI | GAANNNNTTC | 1 cut(s) | 22 |
| MscI | TGGCCA | 1 cut(s) | 47 |
| Msp20I | TGGCCA | 1 cut(s) | 47 |
| MspA1I | CMGCKG | 1 cut(s) | 70 |
| MspCI | CTTAAG | 1 cut(s) | 685 |
| MspR9I | CCNGG | 1 cut(s) | 1406 |
| MunI | CAATTG | 3 cut(s) | 1248, 1374, 1431 |
| Mva1269I | GAATGC | 1 cut(s) | 1357 |
| MvaI | CCWGG | 1 cut(s) | 1406 |
| MvnI | CGCG | 1 cut(s) | 16 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1244 |
| NcoI | CCATGG | 1 cut(s) | 1531 |
| NdeII | GATC | 5 cut(s) | 101, 772, 789, 826, 1393 |
| NlaIII | CATG | 7 cut(s) | 390, 662, 787, 1232, 1304, 1535, 1561 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 369, 1311 |
| NmuCI | GTSAC | 2 cut(s) | 232, 708 |
| NsiI | ATGCAT | 1 cut(s) | 1230 |
| NspI | RCATGY | 1 cut(s) | 1561 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 709 |
| PctI | GAATGC | 1 cut(s) | 1357 |
| PdmI | GAANNNNTTC | 1 cut(s) | 22 |
| PfeI | GAWTC | 6 cut(s) | 569, 1150, 1166, 1178, 1261, 1327 |
| PflFI | GACNNNGTC | 2 cut(s) | 82, 238 |
| PfoI | TCCNGGA | 1 cut(s) | 1404 |
| PkrI | GCNGC | 3 cut(s) | 142, 991, 1240 |
| PleI | GAGTC | 3 cut(s) | 522, 635, 1044 |
| PpsI | GAGTC | 3 cut(s) | 522, 635, 1044 |
| Ppu21I | YACGTR | 1 cut(s) | 713 |
| PshBI | ATTAAT | 1 cut(s) | 597 |
| PsiI | TTATAA | 1 cut(s) | 1719 |
| Psp1406I | AACGTT | 1 cut(s) | 1473 |
| Psp6I | CCWGG | 1 cut(s) | 1404 |
| PspGI | CCWGG | 1 cut(s) | 1404 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 369, 1311 |
| PsuI | RGATCY | 1 cut(s) | 826 |
| PsyI | GACNNNGTC | 2 cut(s) | 82, 238 |
| PvuII | CAGCTG | 1 cut(s) | 70 |
| RsaI | GTAC | 4 cut(s) | 135, 624, 722, 1575 |
| RsaNI | GTAC | 4 cut(s) | 134, 623, 721, 1574 |
| SatI | GCNGC | 3 cut(s) | 141, 990, 1239 |
| Sau3AI | GATC | 5 cut(s) | 101, 772, 789, 826, 1393 |
| SchI | GAGTC | 3 cut(s) | 523, 635, 1045 |
| ScrFI | CCNGG | 1 cut(s) | 1406 |
| SfaNI | GCATC | 2 cut(s) | 152, 1630 |
| SmlI | CTYRAG | 2 cut(s) | 30, 685 |
| SmoI | CTYRAG | 2 cut(s) | 30, 685 |
| SsiI | CCGC | 1 cut(s) | 529 |
| SspMI | CTAG | 4 cut(s) | 87, 650, 1088, 1583 |
| StyD4I | CCNGG | 1 cut(s) | 1404 |
| StyI | CCWWGG | 1 cut(s) | 1531 |
| TaaI | ACNGT | 5 cut(s) | 283, 744, 1273, 1492, 1633 |
| TaiI | ACGT | 4 cut(s) | 715, 802, 1130, 1476 |
| TaqI | TCGA | 5 cut(s) | 377, 567, 574, 1568, 1614 |
| TatI | WGTACW | 2 cut(s) | 133, 622 |
| TfiI | GAWTC | 6 cut(s) | 569, 1150, 1166, 1178, 1261, 1327 |
| TscAI | CASTG | 1 cut(s) | 1276 |
| TseFI | GTSAC | 2 cut(s) | 232, 708 |
| TseI | GCWGC | 3 cut(s) | 140, 989, 1238 |
| Tsp45I | GTSAC | 2 cut(s) | 232, 708 |
| TspDTI | ATGAA | 7 cut(s) | 15, 209, 583, 774, 1163, 1524, 1605 |
| TspRI | CASTG | 1 cut(s) | 1276 |
| Tth111I | GACNNNGTC | 2 cut(s) | 82, 238 |
| Vha464I | CTTAAG | 1 cut(s) | 685 |
| VspI | ATTAAT | 1 cut(s) | 597 |
| XapI | RAATTY | 3 cut(s) | 63, 1345, 1415 |
| XbaI | TCTAGA | 1 cut(s) | 649 |
| XceI | RCATGY | 1 cut(s) | 1561 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1529 |
| XmnI | GAANNNNTTC | 1 cut(s) | 22 |
| XspI | CTAG | 4 cut(s) | 87, 650, 1088, 1583 |
| Zsp2I | ATGCAT | 1 cut(s) | 1230 |