ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 247 |
| AccI | GTMKAC | 1 cut(s) | 604 |
| AciI | CCGC | 3 cut(s) | 247, 560, 777 |
| AcoI | YGGCCR | 1 cut(s) | 162 |
| AcsI | RAATTY | 2 cut(s) | 119, 611 |
| AcuI | CTGAAG | 1 cut(s) | 576 |
| AcyI | GRCGYC | 1 cut(s) | 655 |
| AfaI | GTAC | 2 cut(s) | 171, 296 |
| AflIII | ACRYGT | 1 cut(s) | 266 |
| Alw26I | GTCTC | 2 cut(s) | 96, 817 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 94 |
| AoxI | GGCC | 1 cut(s) | 162 |
| ApeKI | GCWGC | 8 cut(s) | 197, 274, 491, 521, 524, 527, 736, 739 |
| ApoI | RAATTY | 2 cut(s) | 119, 611 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 380, 412 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 665 |
| AspS9I | GGNCC | 1 cut(s) | 587 |
| AvaII | GGWCC | 1 cut(s) | 587 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 353, 385 |
| BbvI | GCAGC | 8 cut(s) | 209, 261, 478, 508, 511, 514, 723, 726 |
| BccI | CCATC | 1 cut(s) | 557 |
| BciVI | GTATCC | 1 cut(s) | 344 |
| BcoDI | GTCTC | 2 cut(s) | 96, 817 |
| BfaI | CTAG | 1 cut(s) | 557 |
| BfmI | CTRYAG | 1 cut(s) | 769 |
| BfuI | GTATCC | 1 cut(s) | 344 |
| BisI | GCNGC | 8 cut(s) | 198, 275, 492, 522, 525, 528, 737, 740 |
| BlpI | GCTNAGC | 1 cut(s) | 445 |
| BlsI | GCNGC | 8 cut(s) | 199, 276, 493, 523, 526, 529, 738, 741 |
| Bme18I | GGWCC | 1 cut(s) | 587 |
| BmgT120I | GGNCC | 1 cut(s) | 587 |
| BmiI | GGNNCC | 1 cut(s) | 588 |
| BmsI | GCATC | 4 cut(s) | 161, 418, 625, 723 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 445 |
| BpuEI | CTTGAG | 2 cut(s) | 657, 780 |
| BsaBI | GATNNNNATC | 1 cut(s) | 288 |
| BsaHI | GRCGYC | 1 cut(s) | 655 |
| BsaJI | CCNNGG | 1 cut(s) | 165 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 67, 97 |
| Bse1I | ACTGG | 2 cut(s) | 575, 655 |
| Bse3DI | GCAATG | 1 cut(s) | 489 |
| Bse8I | GATNNNNATC | 1 cut(s) | 288 |
| BseDI | CCNNGG | 1 cut(s) | 165 |
| BseGI | GGATG | 2 cut(s) | 568, 699 |
| BseJI | GATNNNNATC | 1 cut(s) | 288 |
| BseMI | GCAATG | 1 cut(s) | 489 |
| BseMII | CTCAG | 1 cut(s) | 101 |
| BseNI | ACTGG | 2 cut(s) | 575, 655 |
| BseRI | GAGGAG | 4 cut(s) | 75, 202, 230, 389 |
| BseXI | GCAGC | 8 cut(s) | 209, 261, 478, 508, 511, 514, 723, 726 |
| BsgI | GTGCAG | 2 cut(s) | 260, 513 |
| BshFI | GGCC | 1 cut(s) | 164 |
| BsmAI | GTCTC | 2 cut(s) | 96, 817 |
| BsnI | GGCC | 1 cut(s) | 164 |
| Bsp1407I | TGTACA | 1 cut(s) | 294 |
| Bsp143I | GATC | 3 cut(s) | 103, 289, 301 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 445 |
| BspACI | CCGC | 3 cut(s) | 247, 560, 777 |
| BspANI | GGCC | 1 cut(s) | 164 |
| BspCNI | CTCAG | 1 cut(s) | 100 |
| BspLI | GGNNCC | 1 cut(s) | 588 |
| BsrBI | CCGCTC | 1 cut(s) | 247 |
| BsrDI | GCAATG | 1 cut(s) | 489 |
| BsrGI | TGTACA | 1 cut(s) | 294 |
| BsrI | ACTGG | 2 cut(s) | 575, 655 |
| BssECI | CCNNGG | 1 cut(s) | 165 |
| BssMI | GATC | 3 cut(s) | 103, 289, 301 |
| BssNI | GRCGYC | 1 cut(s) | 655 |
| Bst4CI | ACNGT | 4 cut(s) | 79, 356, 473, 602 |
| Bst6I | CTCTTC | 3 cut(s) | 42, 356, 683 |
| BstACI | GRCGYC | 1 cut(s) | 655 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 488 |
| BstAUI | TGTACA | 1 cut(s) | 294 |
| BstDEI | CTNAG | 3 cut(s) | 87, 445, 849 |
| BstF5I | GGATG | 2 cut(s) | 568, 699 |
| BstKTI | GATC | 3 cut(s) | 106, 292, 304 |
| BstMAI | GTCTC | 2 cut(s) | 96, 817 |
| BstMBI | GATC | 3 cut(s) | 103, 289, 301 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 488, 527, 654 |
| BstSFI | CTRYAG | 1 cut(s) | 769 |
| BstV1I | GCAGC | 8 cut(s) | 209, 261, 478, 508, 511, 514, 723, 726 |
| BsuI | GTATCC | 1 cut(s) | 344 |
| BsuRI | GGCC | 1 cut(s) | 164 |
| BtsCI | GGATG | 2 cut(s) | 568, 699 |
| BtsI | GCAGTG | 1 cut(s) | 350 |
| BtsIMutI | CAGTG | 3 cut(s) | 350, 469, 648 |
| CaiI | CAGNNNCTG | 1 cut(s) | 94 |
| Cfr13I | GGNCC | 1 cut(s) | 587 |
| CseI | GACGC | 2 cut(s) | 663, 687 |
| Csp6I | GTAC | 2 cut(s) | 170, 295 |
| CviAII | CATG | 2 cut(s) | 201, 608 |
| CviJI | RGCY | 3 cut(s) | 164, 274, 844 |
| CviKI_1 | RGCY | 3 cut(s) | 164, 274, 844 |
| CviQI | GTAC | 2 cut(s) | 170, 295 |
| DdeI | CTNAG | 3 cut(s) | 87, 445, 849 |
| DpnI | GATC | 3 cut(s) | 105, 291, 303 |
| DpnII | GATC | 3 cut(s) | 103, 289, 301 |
| EaeI | YGGCCR | 1 cut(s) | 162 |
| Eam1104I | CTCTTC | 3 cut(s) | 42, 356, 683 |
| EarI | CTCTTC | 3 cut(s) | 42, 356, 683 |
| Eco47I | GGWCC | 1 cut(s) | 587 |
| Eco57I | CTGAAG | 1 cut(s) | 576 |
| EcoO109I | RGGNCCY | 1 cut(s) | 587 |
| EcoRI | GAATTC | 1 cut(s) | 611 |
| FaeI | CATG | 2 cut(s) | 204, 611 |
| FatI | CATG | 2 cut(s) | 200, 607 |
| FblI | GTMKAC | 1 cut(s) | 604 |
| Fnu4HI | GCNGC | 8 cut(s) | 198, 275, 492, 522, 525, 528, 737, 740 |
| FokI | GGATG | 2 cut(s) | 575, 706 |
| Fsp4HI | GCNGC | 8 cut(s) | 198, 275, 492, 522, 525, 528, 737, 740 |
| FspBI | CTAG | 1 cut(s) | 557 |
| GluI | GCNGC | 8 cut(s) | 198, 275, 492, 522, 525, 528, 737, 740 |
| HaeIII | GGCC | 1 cut(s) | 164 |
| HgaI | GACGC | 2 cut(s) | 663, 687 |
| Hin1I | GRCGYC | 1 cut(s) | 655 |
| Hin1II | CATG | 2 cut(s) | 204, 611 |
| HinfI | GANTC | 3 cut(s) | 256, 430, 810 |
| Hpy166II | GTNNAC | 2 cut(s) | 20, 605 |
| Hpy188I | TCNGA | 5 cut(s) | 108, 157, 255, 261, 726 |
| Hpy188III | TCNNGA | 4 cut(s) | 180, 305, 386, 797 |
| Hpy8I | GTNNAC | 2 cut(s) | 20, 605 |
| HpyAV | CCTTC | 2 cut(s) | 600, 825 |
| HpyCH4III | ACNGT | 4 cut(s) | 79, 356, 473, 602 |
| HpyCH4IV | ACGT | 1 cut(s) | 266 |
| HpyCH4V | TGCA | 9 cut(s) | 67, 125, 277, 469, 482, 513, 530, 648, 823 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 488, 527, 654 |
| HpyF3I | CTNAG | 3 cut(s) | 87, 445, 849 |
| HpySE526I | ACGT | 1 cut(s) | 266 |
| Hsp92I | GRCGYC | 1 cut(s) | 655 |
| Hsp92II | CATG | 2 cut(s) | 204, 611 |
| Kzo9I | GATC | 3 cut(s) | 103, 289, 301 |
| LmnI | GCTCC | 2 cut(s) | 499, 747 |
| LpnPI | CCDG | 8 cut(s) | 290, 294, 391, 531, 569, 588, 636, 671 |
| Lsp1109I | GCAGC | 8 cut(s) | 209, 261, 478, 508, 511, 514, 723, 726 |
| LweI | GCATC | 4 cut(s) | 161, 418, 625, 723 |
| MaeI | CTAG | 1 cut(s) | 557 |
| MaeII | ACGT | 1 cut(s) | 266 |
| MalI | GATC | 3 cut(s) | 105, 291, 303 |
| MbiI | CCGCTC | 1 cut(s) | 247 |
| MboI | GATC | 3 cut(s) | 103, 289, 301 |
| MboII | GAAGA | 8 cut(s) | 16, 19, 29, 373, 607, 697, 700, 847 |
| MluCI | AATT | 7 cut(s) | 68, 119, 210, 415, 611, 626, 780 |
| MlyI | GAGTC | 2 cut(s) | 439, 819 |
| MroXI | GAANNNNTTC | 1 cut(s) | 665 |
| MseI | TTAA | 2 cut(s) | 224, 783 |
| MslI | CAYNNNNRTG | 2 cut(s) | 474, 546 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 488, 527, 654 |
| NdeII | GATC | 3 cut(s) | 103, 289, 301 |
| NlaIII | CATG | 2 cut(s) | 204, 611 |
| NlaIV | GGNNCC | 1 cut(s) | 588 |
| NmeAIII | GCCGAG | 1 cut(s) | 190 |
| PdmI | GAANNNNTTC | 1 cut(s) | 665 |
| PfeI | GAWTC | 1 cut(s) | 256 |
| PkrI | GCNGC | 8 cut(s) | 199, 276, 493, 523, 526, 529, 738, 741 |
| PleI | GAGTC | 2 cut(s) | 438, 818 |
| PpsI | GAGTC | 2 cut(s) | 438, 818 |
| PpuMI | RGGWCCY | 1 cut(s) | 587 |
| Psp5II | RGGWCCY | 1 cut(s) | 587 |
| PspN4I | GGNNCC | 1 cut(s) | 588 |
| PspPI | GGNCC | 1 cut(s) | 587 |
| PspPPI | RGGWCCY | 1 cut(s) | 587 |
| PstNI | CAGNNNCTG | 1 cut(s) | 94 |
| RsaI | GTAC | 2 cut(s) | 171, 296 |
| RsaNI | GTAC | 2 cut(s) | 170, 295 |
| RseI | CAYNNNNRTG | 2 cut(s) | 474, 546 |
| SaqAI | TTAA | 2 cut(s) | 224, 783 |
| SatI | GCNGC | 8 cut(s) | 198, 275, 492, 522, 525, 528, 737, 740 |
| Sau3AI | GATC | 3 cut(s) | 103, 289, 301 |
| Sau96I | GGNCC | 1 cut(s) | 587 |
| SchI | GAGTC | 2 cut(s) | 439, 819 |
| SetI | ASST | 2 cut(s) | 171, 269 |
| SfaNI | GCATC | 4 cut(s) | 161, 418, 625, 723 |
| SfcI | CTRYAG | 1 cut(s) | 769 |
| SinI | GGWCC | 1 cut(s) | 587 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 474, 546 |
| SmlI | CTYRAG | 2 cut(s) | 672, 795 |
| SmoI | CTYRAG | 2 cut(s) | 672, 795 |
| Sse9I | AATT | 7 cut(s) | 68, 119, 210, 415, 611, 626, 780 |
| SsiI | CCGC | 3 cut(s) | 247, 560, 777 |
| SspMI | CTAG | 1 cut(s) | 557 |
| TaaI | ACNGT | 4 cut(s) | 79, 356, 473, 602 |
| TaiI | ACGT | 1 cut(s) | 269 |
| TaqI | TCGA | 1 cut(s) | 179 |
| TasI | AATT | 7 cut(s) | 68, 119, 210, 415, 611, 626, 780 |
| TatI | WGTACW | 1 cut(s) | 294 |
| TfiI | GAWTC | 1 cut(s) | 256 |
| Tru1I | TTAA | 2 cut(s) | 224, 783 |
| Tru9I | TTAA | 2 cut(s) | 224, 783 |
| TscAI | CASTG | 3 cut(s) | 350, 476, 655 |
| TseI | GCWGC | 8 cut(s) | 197, 274, 491, 521, 524, 527, 736, 739 |
| TspDTI | ATGAA | 3 cut(s) | 17, 351, 624 |
| TspGWI | ACGGA | 3 cut(s) | 311, 547, 709 |
| TspRI | CASTG | 3 cut(s) | 350, 476, 655 |
| VpaK11BI | GGWCC | 1 cut(s) | 587 |
| XapI | RAATTY | 2 cut(s) | 119, 611 |
| XmiI | GTMKAC | 1 cut(s) | 604 |
| XmnI | GAANNNNTTC | 1 cut(s) | 665 |
| XspI | CTAG | 1 cut(s) | 557 |