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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 76 |
| AciI | CCGC | 2 cut(s) | 275, 299 |
| AcoI | YGGCCR | 3 cut(s) | 276, 300, 496 |
| AcuI | CTGAAG | 3 cut(s) | 276, 348, 372 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 285, 309 |
| AflII | CTTAAG | 1 cut(s) | 533 |
| AgsI | TTSAA | 3 cut(s) | 139, 206, 407 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 206, 238 |
| AluBI | AGCT | 3 cut(s) | 28, 65, 350 |
| AluI | AGCT | 3 cut(s) | 28, 65, 350 |
| Alw21I | GWGCWC | 1 cut(s) | 84 |
| Alw26I | GTCTC | 1 cut(s) | 175 |
| Aor13HI | TCCGGA | 1 cut(s) | 76 |
| AoxI | GGCC | 3 cut(s) | 276, 300, 496 |
| ApeKI | GCWGC | 2 cut(s) | 347, 539 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 49, 81 |
| AsuHPI | GGTGA | 1 cut(s) | 35 |
| BalI | TGGCCA | 1 cut(s) | 498 |
| Bbv12I | GWGCWC | 1 cut(s) | 84 |
| BbvI | GCAGC | 2 cut(s) | 359, 526 |
| BciVI | GTATCC | 1 cut(s) | 125 |
| BcoDI | GTCTC | 1 cut(s) | 175 |
| BfaI | CTAG | 1 cut(s) | 399 |
| BfrI | CTTAAG | 1 cut(s) | 533 |
| BfuI | GTATCC | 1 cut(s) | 125 |
| BisI | GCNGC | 4 cut(s) | 276, 300, 348, 540 |
| BlsI | GCNGC | 4 cut(s) | 277, 301, 349, 541 |
| BmiI | GGNNCC | 1 cut(s) | 437 |
| BsaJI | CCNNGG | 2 cut(s) | 279, 303 |
| BsaWI | WCCGGW | 1 cut(s) | 76 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 218, 248 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 285, 309 |
| Bse3DI | GCAATG | 1 cut(s) | 487 |
| BseAI | TCCGGA | 1 cut(s) | 76 |
| BseDI | CCNNGG | 2 cut(s) | 279, 303 |
| BseGI | GGATG | 1 cut(s) | 235 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 285, 309 |
| BseMI | GCAATG | 1 cut(s) | 487 |
| BseRI | GAGGAG | 2 cut(s) | 296, 320 |
| BseX3I | CGGCCG | 2 cut(s) | 276, 300 |
| BseXI | GCAGC | 2 cut(s) | 359, 526 |
| Bsh1285I | CGRYCG | 2 cut(s) | 279, 303 |
| BshFI | GGCC | 3 cut(s) | 278, 302, 498 |
| BsiEI | CGRYCG | 2 cut(s) | 279, 303 |
| BsiHKAI | GWGCWC | 1 cut(s) | 84 |
| BsiSI | CCGG | 1 cut(s) | 77 |
| BslFI | GGGAC | 1 cut(s) | 85 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 285, 309 |
| BsmAI | GTCTC | 1 cut(s) | 175 |
| BsmFI | GGGAC | 1 cut(s) | 85 |
| BsnI | GGCC | 3 cut(s) | 278, 302, 498 |
| Bsp1286I | GDGCHC | 1 cut(s) | 84 |
| Bsp13I | TCCGGA | 1 cut(s) | 76 |
| BspACI | CCGC | 2 cut(s) | 275, 299 |
| BspANI | GGCC | 3 cut(s) | 278, 302, 498 |
| BspEI | TCCGGA | 1 cut(s) | 76 |
| BspLI | GGNNCC | 1 cut(s) | 437 |
| BspTI | CTTAAG | 1 cut(s) | 533 |
| BsrDI | GCAATG | 1 cut(s) | 487 |
| BssECI | CCNNGG | 2 cut(s) | 279, 303 |
| Bst4CI | ACNGT | 2 cut(s) | 23, 457 |
| Bst6I | CTCTTC | 6 cut(s) | 85, 204, 252, 261, 324, 348 |
| BstAFI | CTTAAG | 1 cut(s) | 533 |
| BstF5I | GGATG | 1 cut(s) | 235 |
| BstMAI | GTCTC | 1 cut(s) | 175 |
| BstMCI | CGRYCG | 2 cut(s) | 279, 303 |
| BstNSI | RCATGY | 1 cut(s) | 518 |
| BstV1I | GCAGC | 2 cut(s) | 359, 526 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 494 |
| BstZI | CGGCCG | 2 cut(s) | 276, 300 |
| BsuI | GTATCC | 1 cut(s) | 125 |
| BsuRI | GGCC | 3 cut(s) | 278, 302, 498 |
| BtsCI | GGATG | 1 cut(s) | 235 |
| BtsIMutI | CAGTG | 1 cut(s) | 453 |
| CviAII | CATG | 3 cut(s) | 440, 515, 528 |
| CviJI | RGCY | 9 cut(s) | 28, 65, 278, 302, 326, 350, 438, 498, 539 |
| CviKI_1 | RGCY | 9 cut(s) | 28, 65, 278, 302, 326, 350, 438, 498, 539 |
| EaeI | YGGCCR | 3 cut(s) | 276, 300, 496 |
| EagI | CGGCCG | 2 cut(s) | 276, 300 |
| Eam1104I | CTCTTC | 6 cut(s) | 85, 204, 252, 261, 324, 348 |
| EarI | CTCTTC | 6 cut(s) | 85, 204, 252, 261, 324, 348 |
| EclXI | CGGCCG | 2 cut(s) | 276, 300 |
| Eco52I | CGGCCG | 2 cut(s) | 276, 300 |
| Eco57I | CTGAAG | 3 cut(s) | 276, 348, 372 |
| FaeI | CATG | 3 cut(s) | 443, 518, 531 |
| FaiI | YATR | 8 cut(s) | 35, 104, 114, 250, 252, 441, 516, 529 |
| FaqI | GGGAC | 1 cut(s) | 85 |
| FatI | CATG | 3 cut(s) | 439, 514, 527 |
| Fnu4HI | GCNGC | 4 cut(s) | 276, 300, 348, 540 |
| FokI | GGATG | 1 cut(s) | 242 |
| Fsp4HI | GCNGC | 4 cut(s) | 276, 300, 348, 540 |
| FspBI | CTAG | 1 cut(s) | 399 |
| GluI | GCNGC | 4 cut(s) | 276, 300, 348, 540 |
| HaeIII | GGCC | 3 cut(s) | 278, 302, 498 |
| HapII | CCGG | 1 cut(s) | 77 |
| Hin1II | CATG | 3 cut(s) | 443, 518, 531 |
| HinfI | GANTC | 3 cut(s) | 73, 173, 524 |
| HpaII | CCGG | 1 cut(s) | 77 |
| HphI | GGTGA | 1 cut(s) | 35 |
| Hpy166II | GTNNAC | 1 cut(s) | 512 |
| Hpy188III | TCNNGA | 1 cut(s) | 77 |
| Hpy8I | GTNNAC | 1 cut(s) | 512 |
| HpyAV | CCTTC | 1 cut(s) | 152 |
| HpyCH4III | ACNGT | 2 cut(s) | 23, 457 |
| HpyCH4IV | ACGT | 1 cut(s) | 16 |
| HpyCH4V | TGCA | 1 cut(s) | 518 |
| HpySE526I | ACGT | 1 cut(s) | 16 |
| Hsp92II | CATG | 3 cut(s) | 443, 518, 531 |
| Kpn2I | TCCGGA | 1 cut(s) | 76 |
| LmnI | GCTCC | 2 cut(s) | 79, 435 |
| LpnPI | CCDG | 2 cut(s) | 90, 480 |
| Lsp1109I | GCAGC | 2 cut(s) | 359, 526 |
| MaeI | CTAG | 1 cut(s) | 399 |
| MaeII | ACGT | 1 cut(s) | 16 |
| MaeIII | GTNAC | 4 cut(s) | 17, 44, 119, 448 |
| MboII | GAAGA | 9 cut(s) | 102, 208, 218, 221, 256, 269, 278, 341, 365 |
| MfeI | CAATTG | 1 cut(s) | 410 |
| MhlI | GDGCHC | 1 cut(s) | 84 |
| MlsI | TGGCCA | 1 cut(s) | 498 |
| MluCI | AATT | 2 cut(s) | 221, 410 |
| MluNI | TGGCCA | 1 cut(s) | 498 |
| MlyI | GAGTC | 2 cut(s) | 67, 182 |
| Mox20I | TGGCCA | 1 cut(s) | 498 |
| MroI | TCCGGA | 1 cut(s) | 76 |
| MscI | TGGCCA | 1 cut(s) | 498 |
| MseI | TTAA | 2 cut(s) | 168, 534 |
| Msp20I | TGGCCA | 1 cut(s) | 498 |
| MspA1I | CMGCKG | 1 cut(s) | 350 |
| MspCI | CTTAAG | 1 cut(s) | 533 |
| MspI | CCGG | 1 cut(s) | 77 |
| MunI | CAATTG | 1 cut(s) | 410 |
| NlaIII | CATG | 3 cut(s) | 443, 518, 531 |
| NlaIV | GGNNCC | 1 cut(s) | 437 |
| NmeAIII | GCCGAG | 2 cut(s) | 304, 328 |
| NmuCI | GTSAC | 1 cut(s) | 17 |
| NspI | RCATGY | 1 cut(s) | 518 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 13 |
| PfeI | GAWTC | 1 cut(s) | 524 |
| PkrI | GCNGC | 4 cut(s) | 277, 301, 349, 541 |
| PleI | GAGTC | 2 cut(s) | 67, 181 |
| PpsI | GAGTC | 2 cut(s) | 67, 181 |
| PspN4I | GGNNCC | 1 cut(s) | 437 |
| PvuII | CAGCTG | 1 cut(s) | 350 |
| SaqAI | TTAA | 2 cut(s) | 168, 534 |
| SatI | GCNGC | 4 cut(s) | 276, 300, 348, 540 |
| SchI | GAGTC | 2 cut(s) | 67, 182 |
| SduI | GDGCHC | 1 cut(s) | 84 |
| SetI | ASST | 5 cut(s) | 19, 30, 67, 144, 352 |
| SmlI | CTYRAG | 1 cut(s) | 533 |
| SmoI | CTYRAG | 1 cut(s) | 533 |
| Sse9I | AATT | 2 cut(s) | 221, 410 |
| SsiI | CCGC | 2 cut(s) | 275, 299 |
| SspMI | CTAG | 1 cut(s) | 399 |
| TaaI | ACNGT | 2 cut(s) | 23, 457 |
| TaiI | ACGT | 1 cut(s) | 19 |
| TasI | AATT | 2 cut(s) | 221, 410 |
| TauI | GCSGC | 2 cut(s) | 278, 302 |
| TfiI | GAWTC | 1 cut(s) | 524 |
| Tru1I | TTAA | 2 cut(s) | 168, 534 |
| Tru9I | TTAA | 2 cut(s) | 168, 534 |
| TscAI | CASTG | 1 cut(s) | 460 |
| TseFI | GTSAC | 1 cut(s) | 17 |
| TseI | GCWGC | 2 cut(s) | 347, 539 |
| Tsp45I | GTSAC | 1 cut(s) | 17 |
| TspDTI | ATGAA | 1 cut(s) | 516 |
| TspRI | CASTG | 1 cut(s) | 460 |
| Vha464I | CTTAAG | 1 cut(s) | 533 |
| XceI | RCATGY | 1 cut(s) | 518 |
| XspI | CTAG | 1 cut(s) | 399 |