Rh5CG363300

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000006
Physical Location & Seq
Forward (+)
43642059 .. 43650666
8608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG363300.1

Sequence Viewer

Length: 438 bp
ATGGGTCTTCACGACATTTTACAGTCCGAGGTGGCGCCACATGGCGAAAAGCGTGCTACACAACAAGAAAGACGCAAAAAGTATTTATATCCTCATAGACTGTCTCTTAAGGGATATGTAGGGTTGGAGGAAGATATGGCTAATGAGATGGGTGATGAAGAAGTTGATAGGGCCACACTTTGGATCAAAGGAAGGCAGTCCAAGGATGGTAGTTTCAAGGATGAAGAGACAAAAAAGAAGGCTGAAAAAATAGTCATCATGGTCATAGAAACCAACGTCACGGTCCCAGGGATCAGTTGTCACGGTCGTAGAGACTGTCATCGAGGCCATGGAGACCCGCGGTCAGCGTCAAAGAAGTCAAAATTTGGAAAGGTTCGTTTCGGTATTGGGAAGCTTGGAATCAATGATGCTGCTTCACAGCGCCATTGCTTCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

145

Amino Acids

16.38

Weight (kDa)

9.32

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 16 - 84 2.2e-08 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000006)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19190 FvH4_1g19191 FvH4_1g20121 FvH4_1g23800 FvH4_1g23802 FvH4_1g25001 FvH4_1g25002 FvH4_1g26740 FvH4_1g27950 FvH4_1g28483 FvH4_1g29807 FvH4_1g29808 FvH4_2g04946 FvH4_2g04948 FvH4_2g04949 FvH4_2g04950 FvH4_2g07145 FvH4_2g07751 FvH4_2g07752 FvH4_2g11482 FvH4_2g11483 FvH4_2g18191 FvH4_2g21271 FvH4_2g21272 FvH4_3g14251 FvH4_3g14252 FvH4_3g14361 FvH4_3g18051 FvH4_3g19213 FvH4_3g21081 FvH4_3g21082 FvH4_3g23522 FvH4_3g24310 FvH4_3g24321 FvH4_3g26441 FvH4_3g30441 FvH4_3g30442 FvH4_3g31624 FvH4_3g31712 FvH4_3g31713 FvH4_3g31715 FvH4_3g31717 FvH4_3g31744 FvH4_3g31745 FvH4_3g32842 FvH4_3g33070 FvH4_4g05701 FvH4_4g08650 FvH4_4g09041 FvH4_4g09070 FvH4_4g09210 FvH4_4g09211 FvH4_4g09212 FvH4_4g09772 FvH4_4g09773 FvH4_4g09821 FvH4_4g10052 FvH4_4g10091 FvH4_4g15801 FvH4_4g15803 FvH4_4g16176 FvH4_4g16177 FvH4_4g16571 FvH4_4g16764 FvH4_5g18421 FvH4_5g19271 FvH4_5g23293 FvH4_5g24830 FvH4_5g25000 FvH4_5g25710 FvH4_5g25800 FvH4_5g31521 FvH4_5g31540 FvH4_5g31943 FvH4_5g33852 FvH4_6g12431 FvH4_6g12901 FvH4_6g12902 FvH4_6g12903 FvH4_6g20171 FvH4_6g20174 FvH4_6g20175 FvH4_6g20910 FvH4_6g22902 FvH4_6g22903 FvH4_6g22904 FvH4_6g23071 FvH4_6g23351 FvH4_6g31293 FvH4_6g32742 FvH4_6g53023 FvH4_6g53024 FvH4_6g53025 FvH4_7g01021 FvH4_7g01022 FvH4_7g02151 FvH4_7g02152 FvH4_7g02602 FvH4_7g02992 FvH4_7g02993 FvH4_7g02994 FvH4_7g02995 FvH4_7g07222 FvH4_7g07223 FvH4_7g16901 FvH4_7g25620 FvH4_7g25620
malus_domestica MD01G1047900.v1.1
prunus_persica Prupe.1G028600_v2.0.a1 Prupe.1G028600_v2.0.a1 Prupe.1G028600_v2.0.a1 Prupe.1G036300_v2.0.a1 Prupe.1G055100_v2.0.a1 Prupe.1G091800_v2.0.a1 Prupe.1G130900_v2.0.a1 Prupe.1G173700_v2.0.a1 Prupe.1G174000_v2.0.a1 Prupe.1G183700_v2.0.a1 Prupe.1G184100_v2.0.a1 Prupe.1G185000_v2.0.a1 Prupe.1G192500_v2.0.a1 Prupe.1G193900_v2.0.a1 Prupe.1G199400_v2.0.a1 Prupe.1G199400_v2.0.a1 Prupe.1G201000_v2.0.a1 Prupe.1G202700_v2.0.a1 Prupe.1G204500_v2.0.a1 Prupe.1G237300_v2.0.a1 Prupe.1G310400_v2.0.a1 Prupe.1G397800_v2.0.a1 Prupe.1G565100_v2.0.a1 Prupe.2G011100_v2.0.a1 Prupe.2G045600_v2.0.a1 Prupe.2G053400_v2.0.a1 Prupe.2G055400_v2.0.a1 Prupe.2G055400_v2.0.a1 Prupe.2G055400_v2.0.a1 Prupe.2G062000_v2.0.a1 Prupe.2G088700_v2.0.a1 Prupe.2G089500_v2.0.a1 Prupe.2G090400_v2.0.a1 Prupe.2G094600_v2.0.a1 Prupe.2G155700_v2.0.a1 Prupe.2G157500_v2.0.a1 Prupe.3G103000_v2.0.a1 Prupe.3G106000_v2.0.a1 Prupe.3G107500_v2.0.a1 Prupe.3G113900_v2.0.a1 Prupe.3G118800_v2.0.a1 Prupe.3G119600_v2.0.a1 Prupe.3G129900_v2.0.a1 Prupe.3G153900_v2.0.a1 Prupe.4G092400_v2.0.a1 Prupe.4G198900_v2.0.a1 Prupe.4G229400_v2.0.a1 Prupe.4G253400_v2.0.a1 Prupe.4G253500_v2.0.a1 Prupe.4G254500_v2.0.a1 Prupe.4G254700_v2.0.a1 Prupe.4G261200_v2.0.a1 Prupe.4G261200_v2.0.a1 Prupe.4G261200_v2.0.a1 Prupe.4G261200_v2.0.a1 Prupe.5G023300_v2.0.a1 Prupe.5G040600_v2.0.a1 Prupe.5G051700_v2.0.a1 Prupe.5G060800_v2.0.a1 Prupe.5G062800_v2.0.a1 Prupe.5G062900_v2.0.a1 Prupe.6G125300_v2.0.a1 Prupe.6G137200_v2.0.a1 Prupe.6G142900_v2.0.a1 Prupe.6G155000_v2.0.a1 Prupe.6G160400_v2.0.a1 Prupe.6G180100_v2.0.a1 Prupe.6G200000_v2.0.a1 Prupe.6G265800_v2.0.a1 Prupe.7G008900_v2.0.a1 Prupe.7G029100_v2.0.a1 Prupe.7G033400_v2.0.a1 Prupe.7G036200_v2.0.a1 Prupe.7G055100_v2.0.a1 Prupe.7G057400_v2.0.a1 Prupe.7G093000_v2.0.a1 Prupe.8G047800_v2.0.a1 Prupe.8G054500_v2.0.a1 Prupe.8G055800_v2.0.a1 Prupe.8G058300_v2.0.a1 Prupe.8G059300_v2.0.a1 Prupe.8G059600_v2.0.a1
pyrus_communis pycom04g13540
rosa_chinensis RchiOBHm_Chr0c11g0499441 RchiOBHm_Chr1g0316591 RchiOBHm_Chr1g0319471 RchiOBHm_Chr1g0322411 RchiOBHm_Chr1g0325701 RchiOBHm_Chr1g0325711 RchiOBHm_Chr1g0326141 RchiOBHm_Chr1g0328151 RchiOBHm_Chr1g0329531 RchiOBHm_Chr1g0340601 RchiOBHm_Chr1g0340611 RchiOBHm_Chr1g0342101 RchiOBHm_Chr1g0355551 RchiOBHm_Chr1g0364031 RchiOBHm_Chr2g0090831 RchiOBHm_Chr2g0095171 RchiOBHm_Chr2g0095181 RchiOBHm_Chr2g0095661 RchiOBHm_Chr2g0102071 RchiOBHm_Chr2g0102081 RchiOBHm_Chr2g0108851 RchiOBHm_Chr2g0108861 RchiOBHm_Chr2g0110491 RchiOBHm_Chr2g0112151 RchiOBHm_Chr2g0114971 RchiOBHm_Chr2g0119321 RchiOBHm_Chr2g0119551 RchiOBHm_Chr2g0120301 RchiOBHm_Chr2g0120801 RchiOBHm_Chr2g0123101 RchiOBHm_Chr2g0123111 RchiOBHm_Chr2g0132431 RchiOBHm_Chr2g0134051 RchiOBHm_Chr2g0140381 RchiOBHm_Chr2g0141521 RchiOBHm_Chr2g0141551 RchiOBHm_Chr2g0141561 RchiOBHm_Chr2g0147501 RchiOBHm_Chr2g0147531 RchiOBHm_Chr2g0156471 RchiOBHm_Chr2g0164701 RchiOBHm_Chr3g0471941 RchiOBHm_Chr3g0481131 RchiOBHm_Chr3g0481661 RchiOBHm_Chr3g0481681 RchiOBHm_Chr3g0483461 RchiOBHm_Chr3g0485221 RchiOBHm_Chr3g0485231 RchiOBHm_Chr3g0488981 RchiOBHm_Chr3g0492751 RchiOBHm_Chr3g0494181 RchiOBHm_Chr3g0494841 RchiOBHm_Chr3g0495121 RchiOBHm_Chr3g0495531 RchiOBHm_Chr3g0495851 RchiOBHm_Chr3g0496551 RchiOBHm_Chr4g0391241 RchiOBHm_Chr4g0391901 RchiOBHm_Chr4g0393851 RchiOBHm_Chr4g0393861 RchiOBHm_Chr4g0395761 RchiOBHm_Chr4g0395771 RchiOBHm_Chr4g0401821 RchiOBHm_Chr4g0401831 RchiOBHm_Chr4g0407981 RchiOBHm_Chr4g0407991 RchiOBHm_Chr4g0409161 RchiOBHm_Chr4g0414231 RchiOBHm_Chr4g0414241 RchiOBHm_Chr4g0424911 RchiOBHm_Chr5g0020841 RchiOBHm_Chr5g0023941 RchiOBHm_Chr5g0024781 RchiOBHm_Chr5g0032111 RchiOBHm_Chr5g0041411 RchiOBHm_Chr5g0043821 RchiOBHm_Chr5g0045831 RchiOBHm_Chr5g0045841 RchiOBHm_Chr5g0050961 RchiOBHm_Chr5g0055741 RchiOBHm_Chr5g0059281 RchiOBHm_Chr5g0060901 RchiOBHm_Chr5g0066141 RchiOBHm_Chr5g0066151 RchiOBHm_Chr5g0071361 RchiOBHm_Chr5g0071741 RchiOBHm_Chr5g0071751 RchiOBHm_Chr5g0072061 RchiOBHm_Chr5g0072071 RchiOBHm_Chr5g0072081 RchiOBHm_Chr5g0072981 RchiOBHm_Chr5g0072991 RchiOBHm_Chr5g0079551 RchiOBHm_Chr5g0079561 RchiOBHm_Chr6g0248241 RchiOBHm_Chr6g0250691 RchiOBHm_Chr6g0252671 RchiOBHm_Chr6g0255021 RchiOBHm_Chr6g0255101 RchiOBHm_Chr6g0261391 RchiOBHm_Chr6g0261571 RchiOBHm_Chr6g0263591 RchiOBHm_Chr6g0263841 RchiOBHm_Chr6g0267111 RchiOBHm_Chr6g0271071 RchiOBHm_Chr6g0271081 RchiOBHm_Chr6g0272451 RchiOBHm_Chr6g0275521 RchiOBHm_Chr6g0276501 RchiOBHm_Chr6g0277891 RchiOBHm_Chr6g0286411 RchiOBHm_Chr6g0291801 RchiOBHm_Chr6g0291811 RchiOBHm_Chr6g0299701 RchiOBHm_Chr7g0197301 RchiOBHm_Chr7g0199851 RchiOBHm_Chr7g0201271 RchiOBHm_Chr7g0201281 RchiOBHm_Chr7g0201751 RchiOBHm_Chr7g0203071 RchiOBHm_Chr7g0209041 RchiOBHm_Chr7g0214041 RchiOBHm_Chr7g0227181 RchiOBHm_Chr7g0228371 RchiOBHm_Chr7g0228381 RchiOBHm_Chr7g0229451 RchiOBHm_Chr7g0232621 RchiOBHm_Chr7g0235441 RchiOBHm_Chr7g0235651 RchiOBHm_Chr7g0238761
rosa_laevigata RLG00000000830 RLG00000001948 RLG00000002433 RLG00000002769 RLG00000003151 RLG00000008028 RLG00000008899 RLG00000009226 RLG00000009227 RLG00000009228 RLG00000010216 RLG00000012239 RLG00000013834 RLG00000015137 RLG00000016145 RLG00000017271 RLG00000019392 RLG00000019643 RLG00000019825 RLG00000020440 RLG00000022579 RLG00000022968 RLG00000023053 RLG00000023108 RLG00000024042 RLG00000024133 RLG00000024968 RLG00000024992 RLG00000028744 RLG00000028891 RLG00000029360 RLG00000029366 RLG00000030213 RLG00000033000 RLG00000033162 RLG00000033636 RLG00000034063 RLG00000034559 RLG00000036407
rosa_multiflora Rmu_co8087886.1_g000001 Rmu_co8112260.1_g000001 Rmu_co8179022.1_g000001 Rmu_co8197930.1_g000001 Rmu_co8230879.1_g000001 Rmu_co8240601.1_g000001 Rmu_co8355555.1_g000001 Rmu_co8459319.1_g000001 Rmu_sc0000028.1_g000025 Rmu_sc0000060.1_g000059 Rmu_sc0000060.1_g000060 Rmu_sc0000083.1_g000032 Rmu_sc0000121.1_g000019 Rmu_sc0000124.1_g000022 Rmu_sc0000239.1_g000089 Rmu_sc0000327.1_g000015 Rmu_sc0000366.1_g000009 Rmu_sc0000418.1_g000017 Rmu_sc0000430.1_g000022 Rmu_sc0000430.1_g000023 Rmu_sc0000461.1_g000011 Rmu_sc0000538.1_g000062 Rmu_sc0000580.1_g000111 Rmu_sc0000607.1_g000024 Rmu_sc0000613.1_g000030 Rmu_sc0000698.1_g000030 Rmu_sc0000721.1_g000012 Rmu_sc0000787.1_g000004 Rmu_sc0000811.1_g000019 Rmu_sc0000842.1_g000001 Rmu_sc0001022.1_g000006 Rmu_sc0001063.1_g000007 Rmu_sc0001065.1_g000001 Rmu_sc0001136.1_g000018 Rmu_sc0001206.1_g000013 Rmu_sc0001238.1_g000034 Rmu_sc0001244.1_g000010 Rmu_sc0001250.1_g000012 Rmu_sc0001250.1_g000013 Rmu_sc0001323.1_g000024 Rmu_sc0001516.1_g000089 Rmu_sc0001527.1_g000008 Rmu_sc0001527.1_g000009 Rmu_sc0001572.1_g000006 Rmu_sc0001580.1_g000019 Rmu_sc0001850.1_g000020 Rmu_sc0001879.1_g000024 Rmu_sc0001922.1_g000002 Rmu_sc0001998.1_g000017 Rmu_sc0001998.1_g000048 Rmu_sc0002072.1_g000046 Rmu_sc0002072.1_g000047 Rmu_sc0002146.1_g000006 Rmu_sc0002231.1_g000014 Rmu_sc0002235.1_g000016 Rmu_sc0002310.1_g000025 Rmu_sc0002472.1_g000022 Rmu_sc0002480.1_g000020 Rmu_sc0002480.1_g000021 Rmu_sc0002489.1_g000032 Rmu_sc0002489.1_g000054 Rmu_sc0002591.1_g000040 Rmu_sc0002615.1_g000005 Rmu_sc0002615.1_g000006 Rmu_sc0002636.1_g000032 Rmu_sc0002638.1_g000021 Rmu_sc0002638.1_g000023 Rmu_sc0002669.1_g000077 Rmu_sc0002748.1_g000018 Rmu_sc0002764.1_g000029 Rmu_sc0002791.1_g000011 Rmu_sc0002824.1_g000029 Rmu_sc0002831.1_g000003 Rmu_sc0002897.1_g000006 Rmu_sc0003002.1_g000001 Rmu_sc0003067.1_g000001 Rmu_sc0003080.1_g000031 Rmu_sc0003147.1_g000028 Rmu_sc0003226.1_g000030 Rmu_sc0003226.1_g000031 Rmu_sc0003338.1_g000012 Rmu_sc0003363.1_g000020 Rmu_sc0003456.1_g000007 Rmu_sc0003522.1_g000004 Rmu_sc0003994.1_g000022 Rmu_sc0004250.1_g000011 Rmu_sc0004270.1_g000010 Rmu_sc0004277.1_g000015 Rmu_sc0004284.1_g000005 Rmu_sc0004523.1_g000006 Rmu_sc0004602.1_g000058 Rmu_sc0004602.1_g000059 Rmu_sc0004750.1_g000001 Rmu_sc0004798.1_g000019 Rmu_sc0004807.1_g000001 Rmu_sc0004935.1_g000009 Rmu_sc0005091.1_g000018 Rmu_sc0005091.1_g000021 Rmu_sc0005152.1_g000001 Rmu_sc0005305.1_g000001 Rmu_sc0005338.1_g000012 Rmu_sc0005653.1_g000007 Rmu_sc0005676.1_g000010 Rmu_sc0005676.1_g000011 Rmu_sc0005832.1_g000007 Rmu_sc0005933.1_g000004 Rmu_sc0005954.1_g000036 Rmu_sc0006161.1_g000007 Rmu_sc0006199.1_g000004 Rmu_sc0006361.1_g000002 Rmu_sc0006945.1_g000035 Rmu_sc0007102.1_g000018 Rmu_sc0007264.1_g000006 Rmu_sc0007306.1_g000004 Rmu_sc0007402.1_g000001 Rmu_sc0007487.1_g000001 Rmu_sc0007499.1_g000001 Rmu_sc0007546.1_g000022 Rmu_sc0007795.1_g000001 Rmu_sc0007815.1_g000001 Rmu_sc0008453.1_g000013 Rmu_sc0008633.1_g000005 Rmu_sc0008633.1_g000006 Rmu_sc0009027.1_g000008 Rmu_sc0009048.1_g000001 Rmu_sc0009434.1_g000001 Rmu_sc0009528.1_g000013 Rmu_sc0009528.1_g000014 Rmu_sc0009574.1_g000003 Rmu_sc0010291.1_g000001 Rmu_sc0010735.1_g000004 Rmu_sc0010735.1_g000005 Rmu_sc0011016.1_g000001 Rmu_sc0011203.1_g000007 Rmu_sc0011477.1_g000001 Rmu_sc0011830.1_g000001 Rmu_sc0012206.1_g000006 Rmu_sc0012228.1_g000003 Rmu_sc0012879.1_g000001 Rmu_sc0013119.1_g000001 Rmu_sc0013540.1_g000002 Rmu_sc0013696.1_g000001 Rmu_sc0013696.1_g000005 Rmu_sc0015241.1_g000001 Rmu_sc0015440.1_g000003 Rmu_sc0015452.1_g000001 Rmu_sc0016349.1_g000001 Rmu_sc0016473.1_g000004 Rmu_sc0017843.1_g000001 Rmu_sc0018724.1_g000001 Rmu_sc0018911.1_g000001 Rmu_sc0020753.1_g000001 Rmu_sc0022019.1_g000002 Rmu_sc0022285.1_g000001 Rmu_sc0024626.1_g000001 Rmu_sc0025995.1_g000001 Rmu_sc0026497.1_g000001 Rmu_sc0028464.1_g000001 Rmu_sc0031858.1_g000001 Rmu_sc0033010.1_g000001 Rmu_sc0038704.1_g000001 Rmu_sc0040353.1_g000001 Rmu_sc0042132.1_g000001 Rmu_ssc0000027.1_g000018 Rmu_ssc0000255.1_g000013 Rmu_ssc0000261.1_g000016 Rmu_ssc0000279.1_g000002
rosa_roxburghii Rroxscaffold_164G00436140 Rroxscaffold_175G00432140 Rroxscaffold_176G00431850 Rroxscaffold_180G00433500 Rroxscaffold_1G00001060 Rroxscaffold_1G00004250 Rroxscaffold_1G00010490 Rroxscaffold_1G00011880 Rroxscaffold_1G00011900 Rroxscaffold_1G00015040 Rroxscaffold_1G00016030 Rroxscaffold_1G00017980 Rroxscaffold_1G00025930 Rroxscaffold_1G00027970 Rroxscaffold_1G00031780 Rroxscaffold_1G00033610 Rroxscaffold_1G00033620 Rroxscaffold_1G00033900 Rroxscaffold_1G00042970 Rroxscaffold_1G00045200 Rroxscaffold_1G00053710 Rroxscaffold_1G00054030 Rroxscaffold_2G00076160 Rroxscaffold_2G00082260 Rroxscaffold_2G00092960 Rroxscaffold_2G00099090 Rroxscaffold_2G00102720 Rroxscaffold_2G00102730 Rroxscaffold_2G00102910 Rroxscaffold_2G00110830 Rroxscaffold_2G00111070 Rroxscaffold_2G00112910 Rroxscaffold_2G00116040 Rroxscaffold_2G00118210 Rroxscaffold_2G00118660 Rroxscaffold_2G00120250 Rroxscaffold_2G00123160 Rroxscaffold_2G00124330 Rroxscaffold_2G00124510 Rroxscaffold_2G00133380 Rroxscaffold_2G00134430 Rroxscaffold_2G00134440 Rroxscaffold_2G00134950 Rroxscaffold_2G00143230 Rroxscaffold_2G00155950 Rroxscaffold_3G00220640 Rroxscaffold_3G00220650 Rroxscaffold_3G00221150 Rroxscaffold_3G00225900 Rroxscaffold_3G00233320 Rroxscaffold_3G00237210 Rroxscaffold_3G00237630 Rroxscaffold_3G00239500 Rroxscaffold_3G00267530 Rroxscaffold_4G00292530 Rroxscaffold_4G00297670 Rroxscaffold_4G00299700 Rroxscaffold_4G00310530 Rroxscaffold_4G00314620 Rroxscaffold_4G00316310 Rroxscaffold_4G00317790 Rroxscaffold_4G00318440 Rroxscaffold_4G00318450 Rroxscaffold_5G00343100 Rroxscaffold_5G00346400 Rroxscaffold_5G00347820 Rroxscaffold_5G00348090 Rroxscaffold_5G00350020 Rroxscaffold_5G00361690 Rroxscaffold_5G00363550 Rroxscaffold_5G00364830 Rroxscaffold_5G00382290 Rroxscaffold_6G00390600 Rroxscaffold_6G00393140 Rroxscaffold_6G00402250 Rroxscaffold_6G00412060 Rroxscaffold_6G00414180 Rroxscaffold_6G00416840 Rroxscaffold_6G00423310 Rroxscaffold_6G00424590 Rroxscaffold_6G00424600 Rroxscaffold_6G00426640 Rroxscaffold_6G00426660 Rroxscaffold_7G00182400 Rroxscaffold_7G00188070 Rroxscaffold_7G00188080 Rroxscaffold_7G00188160 Rroxscaffold_7G00188170 Rroxscaffold_7G00188600 Rroxscaffold_7G00195620 Rroxscaffold_7G00198820 Rroxscaffold_7G00203920 Rroxscaffold_7G00209010 Rroxscaffold_7G00211950
rosa_rugosa Rorug01G0034600 Rorug01G0034700 Rorug01G0034800 Rorug01G0062800 Rorug01G0087500 Rorug01G0099400 Rorug01G0099500 Rorug01G0102000 Rorug01G0108900 Rorug01G0114600 Rorug01G0114700 Rorug01G0139100.1 Rorug01G0145800.1 Rorug01G0145900.1 Rorug01G0153100.1 Rorug01G0176900 Rorug01G0185200 Rorug01G0330800 Rorug02G0012900 Rorug02G0057800 Rorug02G0249500 Rorug02G0249600 Rorug02G0256100 Rorug02G0256400 Rorug02G0257300 Rorug02G0263200 Rorug02G0263300 Rorug02G0283500 Rorug02G0315000 Rorug02G0367700 Rorug02G0372200 Rorug02G0382400 Rorug02G0457300 Rorug02G0634000 Rorug02G0634100 Rorug02G0634200 Rorug03G0041900 Rorug03G0145900 Rorug03G0152700 Rorug03G0161300 Rorug03G0235300 Rorug03G0242400 Rorug03G0258600 Rorug03G0264200 Rorug03G0268700 Rorug03G0270400 Rorug03G0273500 Rorug03G0277500 Rorug03G0295900 Rorug03G0296100 Rorug03G0344800 Rorug03G0344800 Rorug03G0344900 Rorug03G0345000 Rorug03G0356200 Rorug04G0006600 Rorug04G0059400 Rorug04G0059500 Rorug04G0059500 Rorug04G0059500 Rorug04G0070200 Rorug04G0130900 Rorug04G0137200 Rorug04G0137600 Rorug04G0168500 Rorug04G0198900 Rorug05G0131200 Rorug05G0183000 Rorug05G0207200 Rorug05G0214800 Rorug05G0214900 Rorug05G0228700 Rorug05G0228800 Rorug05G0231400 Rorug05G0244200 Rorug05G0244200 Rorug05G0255000 Rorug05G0261800 Rorug05G0261900 Rorug05G0265700 Rorug05G0265700 Rorug05G0302600 Rorug05G0308000 Rorug05G0349300.1 Rorug05G0356000 Rorug05G0375300 Rorug05G0381900 Rorug05G0381900 Rorug05G0389900 Rorug05G0390000 Rorug05G0403400 Rorug05G0416800 Rorug05G0430300 Rorug05G0566600 Rorug05G0566600 Rorug05G0566600 Rorug05G0571600 Rorug05G0571600 Rorug06G0029900 Rorug06G0055800 Rorug06G0062700 Rorug06G0062800 Rorug06G0067600 Rorug06G0080800 Rorug06G0080800 Rorug06G0080800 Rorug06G0093800 Rorug06G0101400 Rorug06G0112800 Rorug06G0112800 Rorug06G0162100 Rorug06G0200400.1 Rorug06G0200500 Rorug06G0234700 Rorug06G0279000 Rorug07G0047000 Rorug07G0124800 Rorug07G0163000 Rorug07G0163300 Rorug07G0164600 Rorug07G0166400 Rorug07G0202500 Rorug07G0216700.1 Rorug07G0225600 Rorug07G0225700 Rorug07G0225800 Rorug07G0258800 Rorug07G0276900
rosa_samantha Rh1AG095800 Rh1AG110200 Rh1AG115500 Rh1AG245500 Rh1AG306800 Rh1CG053900 Rh1CG072700 Rh1DG109200 Rh2AG189500 Rh2AG293300 Rh2AG314400 Rh2AG429900 Rh2BG208800 Rh2BG241600 Rh2BG420500 Rh2BG566200 Rh2CG221600 Rh2CG235400 Rh2CG415300 Rh2CG416900 Rh2DG173100 Rh2DG195800 Rh2DG378500 Rh2DG479400 Rh3AG071100 Rh3AG194300 Rh3AG322400 Rh3BG095600 Rh3BG198100 Rh3BG359500 Rh3BG370600 Rh3CG012100 Rh3DG127600 Rh4AG154800 Rh4AG209700 Rh4AG396400 Rh4BG139500 Rh4CG085100 Rh4CG286900 Rh4DG025400 Rh4DG167700 Rh4DG196400 Rh4DG226700 Rh4DG242600 Rh4DG279500 Rh4DG298200 Rh5AG178400 Rh5AG178800 Rh5AG522300 Rh5BG271000 Rh5BG310200 Rh5BG316400 Rh5BG437200 Rh5BG493000 Rh5BG533800 Rh5CG349500 Rh5CG363300 Rh5CG507200 Rh5CG554300 Rh5DG370200 Rh5DG412900 Rh5DG413600 Rh5DG450500 Rh5DG465300 Rh5DG537200 Rh6AG073100 Rh6AG403300 Rh6BG066900 Rh6BG183400 Rh6BG316900 Rh6CG112200 Rh6CG143800 Rh6CG161500 Rh6CG163100 Rh6CG295700 Rh6DG101800 Rh6DG153000 Rh6DG154800 Rh6DG174200 Rh6DG287600 Rh6DG321000 Rh7AG194900 Rh7AG394200 Rh7AG397300 Rh7BG045600 Rh7BG284300 Rh7BG284400 Rh7BG378700 Rh7CG226400 Rh7CG272700 Rh7CG367000 Rh7CG415500 Rh7CG416800 Rh7CG429400 Rh7DG363200
rosa_wichuraiana Rw0G013530 Rw1G005250 Rw1G011640 Rw2G022840 Rw3G005720 Rw3G018940 Rw3G024050 Rw4G003990 Rw5G003430 Rw5G016200 Rw5G026090 Rw5G040220 Rw6G011750 Rw6G012140 Rw6G022920 Rw7G028100 Rw7G032100 Rw7G036110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AccB7I CCANNNNNTGG 1 cut(s) 180
AccII CGCG 1 cut(s) 340
AciI CCGC 2 cut(s) 338, 340
AclWI GGATC 2 cut(s) 191, 299
AcsI RAATTY 1 cut(s) 362
AcyI GRCGYC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 180
AflII CTTAAG 1 cut(s) 107
AgsI TTSAA 1 cut(s) 217
AhdI GACNNNNNGTC 1 cut(s) 340
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 1 cut(s) 394
AluI AGCT 1 cut(s) 394
Alw26I GTCTC 4 cut(s) 108, 221, 306, 327
AlwI GGATC 2 cut(s) 191, 299
AoxI GGCC 2 cut(s) 171, 325
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 1 cut(s) 362
AspLEI GCGC 2 cut(s) 37, 423
AspS9I GGNCC 2 cut(s) 171, 283
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 283
BanI GGYRCC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 397
BccI CCATC 2 cut(s) 142, 200
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 1 cut(s) 288
BcoDI GTCTC 4 cut(s) 108, 221, 306, 327
BfaI CTAG 1 cut(s) 436
BfoI RGCGCY 2 cut(s) 38, 424
BfrI CTTAAG 1 cut(s) 107
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
Bme1390I CCNGG 1 cut(s) 288
Bme18I GGWCC 1 cut(s) 283
BmeRI GACNNNNNGTC 1 cut(s) 340
BmgT120I GGNCC 2 cut(s) 171, 283
BmiI GGNNCC 2 cut(s) 36, 285
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 397
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 327
BsaJI CCNNGG 6 cut(s) 27, 201, 286, 287, 328, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 424
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 6 cut(s) 27, 201, 286, 287, 328, 338
BseGI GGATG 2 cut(s) 211, 226
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMI GCAATG 1 cut(s) 424
BseXI GCAGC 1 cut(s) 397
Bsh1236I CGCG 1 cut(s) 340
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 2 cut(s) 173, 327
BshNI GGYRCC 1 cut(s) 34
BsiEI CGRYCG 1 cut(s) 307
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 4 cut(s) 108, 221, 306, 327
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 2 cut(s) 173, 327
Bso31I GGTCTC 1 cut(s) 327
Bsp143I GATC 2 cut(s) 183, 291
Bsp19I CCATGG 1 cut(s) 328
BspACI CCGC 2 cut(s) 338, 340
BspANI GGCC 2 cut(s) 173, 327
BspFNI CGCG 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 36, 285
BspPI GGATC 2 cut(s) 191, 299
BspT107I GGYRCC 1 cut(s) 34
BspTI CTTAAG 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 424
BssECI CCNNGG 6 cut(s) 27, 201, 286, 287, 328, 338
BssMI GATC 2 cut(s) 183, 291
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 2 cut(s) 201, 328
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 5 cut(s) 24, 102, 283, 305, 317
Bst6I CTCTTC 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 35
BstAFI CTTAAG 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 54
BstDSI CCRYGG 2 cut(s) 328, 338
BstF5I GGATG 2 cut(s) 211, 226
BstFNI CGCG 1 cut(s) 340
BstH2I RGCGCY 2 cut(s) 38, 424
BstHHI GCGC 2 cut(s) 37, 423
BstKTI GATC 2 cut(s) 186, 294
BstMAI GTCTC 4 cut(s) 108, 221, 306, 327
BstMBI GATC 2 cut(s) 183, 291
BstMCI CGRYCG 1 cut(s) 307
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 286
BstUI CGCG 1 cut(s) 340
BstV1I GCAGC 1 cut(s) 397
BsuRI GGCC 2 cut(s) 173, 327
BtgI CCRYGG 2 cut(s) 328, 338
BtsCI GGATG 2 cut(s) 211, 226
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 2 cut(s) 37, 423
Cfr13I GGNCC 2 cut(s) 171, 283
Cfr42I CCGCGG 1 cut(s) 341
CseI GACGC 2 cut(s) 81, 336
CviAII CATG 3 cut(s) 41, 259, 329
CviJI RGCY 5 cut(s) 140, 173, 242, 327, 394
CviKI_1 RGCY 5 cut(s) 140, 173, 242, 327, 394
DinI GGCGCC 1 cut(s) 36
DpnI GATC 2 cut(s) 185, 293
DpnII GATC 2 cut(s) 183, 291
DriI GACNNNNNGTC 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 219
Eam1105I GACNNNNNGTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 2 cut(s) 201, 328
Eco31I GGTCTC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 2 cut(s) 201, 328
EgeI GGCGCC 1 cut(s) 36
EheI GGCGCC 1 cut(s) 36
ErhI CCWWGG 2 cut(s) 201, 328
FaeI CATG 3 cut(s) 44, 262, 332
FaiI YATR 8 cut(s) 42, 88, 96, 117, 137, 260, 266, 330
FaqI GGGAC 1 cut(s) 269
FatI CATG 3 cut(s) 40, 258, 328
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 2 cut(s) 218, 233
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 1 cut(s) 436
GlaI GCGC 2 cut(s) 36, 422
GluI GCNGC 1 cut(s) 411
HaeII RGCGCY 2 cut(s) 38, 424
HaeIII GGCC 2 cut(s) 173, 327
HgaI GACGC 2 cut(s) 81, 336
HhaI GCGC 2 cut(s) 37, 423
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 3 cut(s) 44, 262, 332
Hin6I GCGC 2 cut(s) 35, 421
HinP1I GCGC 2 cut(s) 35, 421
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 1 cut(s) 399
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 11
HpyAV CCTTC 2 cut(s) 186, 232
HpyCH4III ACNGT 5 cut(s) 24, 102, 283, 305, 317
HpyCH4IV ACGT 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 3 cut(s) 44, 262, 332
HspAI GCGC 2 cut(s) 35, 421
KasI GGCGCC 1 cut(s) 34
KspI CCGCGG 1 cut(s) 341
Kzo9I GATC 2 cut(s) 183, 291
LpnPI CCDG 2 cut(s) 273, 300
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 1 cut(s) 397
MaeI CTAG 1 cut(s) 436
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 277, 299
MalI GATC 2 cut(s) 185, 293
MboI GATC 2 cut(s) 183, 291
MboII GAAGA 3 cut(s) 143, 170, 236
MluCI AATT 1 cut(s) 362
Mly113I GGCGCC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 4 cut(s) 22, 102, 121, 317
MseI TTAA 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 340
MspCI CTTAAG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 340
NarI GGCGCC 1 cut(s) 35
NcoI CCATGG 1 cut(s) 328
NdeII GATC 2 cut(s) 183, 291
NlaIII CATG 3 cut(s) 44, 262, 332
NlaIV GGNNCC 2 cut(s) 36, 285
NmuCI GTSAC 2 cut(s) 277, 299
PasI CCCWGGG 1 cut(s) 287
PfeI GAWTC 1 cut(s) 399
PflMI CCANNNNNTGG 1 cut(s) 180
PkrI GCNGC 1 cut(s) 412
PluTI GGCGCC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 36, 285
PspPI GGNCC 2 cut(s) 171, 283
SacII CCGCGG 1 cut(s) 341
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 2 cut(s) 183, 291
Sau96I GGNCC 2 cut(s) 171, 283
ScrFI CCNGG 1 cut(s) 288
SetI ASST 4 cut(s) 33, 279, 375, 396
SfaNI GCATC 1 cut(s) 397
SfoI GGCGCC 1 cut(s) 36
Sfr303I CCGCGG 1 cut(s) 341
SgrBI CCGCGG 1 cut(s) 341
SinI GGWCC 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 362
SsiI CCGC 2 cut(s) 338, 340
SspDI GGCGCC 1 cut(s) 34
SspMI CTAG 1 cut(s) 436
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 2 cut(s) 201, 328
TaaI ACNGT 5 cut(s) 24, 102, 283, 305, 317
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 322
TasI AATT 1 cut(s) 362
TfiI GAWTC 1 cut(s) 399
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 2 cut(s) 277, 299
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 2 cut(s) 277, 299
TspDTI ATGAA 2 cut(s) 171, 237
Van91I CCANNNNNTGG 1 cut(s) 180
Vha464I CTTAAG 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 1 cut(s) 362
XspI CTAG 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.