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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 396 |
| AciI | CCGC | 2 cut(s) | 170, 396 |
| AcsI | RAATTY | 2 cut(s) | 127, 313 |
| AcyI | GRCGYC | 1 cut(s) | 113 |
| AgsI | TTSAA | 3 cut(s) | 70, 107, 318 |
| AluBI | AGCT | 2 cut(s) | 251, 373 |
| AluI | AGCT | 2 cut(s) | 251, 373 |
| Alw21I | GWGCWC | 1 cut(s) | 375 |
| Alw26I | GTCTC | 1 cut(s) | 220 |
| AoxI | GGCC | 2 cut(s) | 32, 163 |
| ApoI | RAATTY | 2 cut(s) | 127, 313 |
| AsuHPI | GGTGA | 1 cut(s) | 123 |
| BanII | GRGCYC | 1 cut(s) | 375 |
| Bbv12I | GWGCWC | 1 cut(s) | 375 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 172, 206 |
| BciVI | GTATCC | 1 cut(s) | 258 |
| BcoDI | GTCTC | 1 cut(s) | 220 |
| BfaI | CTAG | 1 cut(s) | 228 |
| BfuI | GTATCC | 1 cut(s) | 258 |
| BglII | AGATCT | 1 cut(s) | 335 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BpmI | CTGGAG | 1 cut(s) | 273 |
| BsaHI | GRCGYC | 1 cut(s) | 113 |
| BsaWI | WCCGGW | 2 cut(s) | 158, 361 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 103, 133 |
| Bse1I | ACTGG | 1 cut(s) | 77 |
| BseMII | CTCAG | 1 cut(s) | 266 |
| BseNI | ACTGG | 1 cut(s) | 77 |
| BseRI | GAGGAG | 3 cut(s) | 108, 111, 136 |
| Bsh1236I | CGCG | 1 cut(s) | 396 |
| BshFI | GGCC | 2 cut(s) | 34, 165 |
| BsiHKAI | GWGCWC | 1 cut(s) | 375 |
| BsiSI | CCGG | 2 cut(s) | 159, 362 |
| BsmAI | GTCTC | 1 cut(s) | 220 |
| BsnI | GGCC | 2 cut(s) | 34, 165 |
| Bsp1286I | GDGCHC | 1 cut(s) | 375 |
| Bsp143I | GATC | 2 cut(s) | 153, 335 |
| BspACI | CCGC | 2 cut(s) | 170, 396 |
| BspANI | GGCC | 2 cut(s) | 34, 165 |
| BspCNI | CTCAG | 1 cut(s) | 265 |
| BspFNI | CGCG | 1 cut(s) | 396 |
| BspHI | TCATGA | 1 cut(s) | 208 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspQI | GCTCTTC | 1 cut(s) | 380 |
| BsrI | ACTGG | 1 cut(s) | 77 |
| BssMI | GATC | 2 cut(s) | 153, 335 |
| BssNI | GRCGYC | 1 cut(s) | 113 |
| Bst6I | CTCTTC | 1 cut(s) | 380 |
| BstACI | GRCGYC | 1 cut(s) | 113 |
| BstC8I | GCNNGC | 2 cut(s) | 28, 32 |
| BstDEI | CTNAG | 2 cut(s) | 36, 252 |
| BstFNI | CGCG | 1 cut(s) | 396 |
| BstKTI | GATC | 2 cut(s) | 156, 338 |
| BstMAI | GTCTC | 1 cut(s) | 220 |
| BstMBI | GATC | 2 cut(s) | 153, 335 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 50, 353 |
| BstUI | CGCG | 1 cut(s) | 396 |
| BstX2I | RGATCY | 1 cut(s) | 335 |
| BstYI | RGATCY | 1 cut(s) | 335 |
| BsuI | GTATCC | 1 cut(s) | 258 |
| BsuRI | GGCC | 2 cut(s) | 34, 165 |
| Cac8I | GCNNGC | 2 cut(s) | 28, 32 |
| CciI | TCATGA | 1 cut(s) | 208 |
| CseI | GACGC | 1 cut(s) | 121 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 348, 383 |
| CviAII | CATG | 2 cut(s) | 209, 282 |
| CviJI | RGCY | 9 cut(s) | 5, 34, 76, 91, 165, 197, 231, 251, 373 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 34, 76, 91, 165, 197, 231, 251, 373 |
| DdeI | CTNAG | 2 cut(s) | 36, 252 |
| DpnI | GATC | 2 cut(s) | 155, 337 |
| DpnII | GATC | 2 cut(s) | 153, 335 |
| Eam1104I | CTCTTC | 1 cut(s) | 380 |
| EarI | CTCTTC | 1 cut(s) | 380 |
| Ecl136II | GAGCTC | 1 cut(s) | 373 |
| Eco147I | AGGCCT | 1 cut(s) | 34 |
| Eco24I | GRGCYC | 1 cut(s) | 375 |
| Eco32I | GATATC | 1 cut(s) | 260 |
| Eco53kI | GAGCTC | 1 cut(s) | 373 |
| EcoICRI | GAGCTC | 1 cut(s) | 373 |
| EcoRI | GAATTC | 2 cut(s) | 127, 313 |
| EcoRV | GATATC | 1 cut(s) | 260 |
| EcoT38I | GRGCYC | 1 cut(s) | 375 |
| FaeI | CATG | 2 cut(s) | 212, 285 |
| FaiI | YATR | 3 cut(s) | 185, 210, 283 |
| FatI | CATG | 2 cut(s) | 208, 281 |
| FriOI | GRGCYC | 1 cut(s) | 375 |
| FspBI | CTAG | 1 cut(s) | 228 |
| GsuI | CTGGAG | 1 cut(s) | 273 |
| HaeIII | GGCC | 2 cut(s) | 34, 165 |
| HapII | CCGG | 2 cut(s) | 159, 362 |
| HgaI | GACGC | 1 cut(s) | 121 |
| Hin1I | GRCGYC | 1 cut(s) | 113 |
| Hin1II | CATG | 2 cut(s) | 212, 285 |
| HinfI | GANTC | 1 cut(s) | 103 |
| HpaII | CCGG | 2 cut(s) | 159, 362 |
| HphI | GGTGA | 1 cut(s) | 123 |
| Hpy188I | TCNGA | 5 cut(s) | 126, 220, 255, 264, 333 |
| Hpy188III | TCNNGA | 3 cut(s) | 12, 70, 209 |
| HpyAV | CCTTC | 3 cut(s) | 144, 176, 358 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 50, 353 |
| HpyF3I | CTNAG | 2 cut(s) | 36, 252 |
| Hsp92I | GRCGYC | 1 cut(s) | 113 |
| Hsp92II | CATG | 2 cut(s) | 212, 285 |
| Kzo9I | GATC | 2 cut(s) | 153, 335 |
| LguI | GCTCTTC | 1 cut(s) | 380 |
| LmnI | GCTCC | 4 cut(s) | 10, 242, 361, 370 |
| LpnPI | CCDG | 6 cut(s) | 16, 90, 172, 284, 303, 375 |
| MaeI | CTAG | 1 cut(s) | 228 |
| MalI | GATC | 2 cut(s) | 155, 337 |
| MboI | GATC | 2 cut(s) | 153, 335 |
| MboII | GAAGA | 5 cut(s) | 27, 69, 343, 367, 370 |
| MflI | RGATCY | 1 cut(s) | 335 |
| MhlI | GDGCHC | 1 cut(s) | 375 |
| MluCI | AATT | 3 cut(s) | 127, 313, 319 |
| MnlI | CCTC | 8 cut(s) | 19, 126, 129, 132, 154, 157, 187, 297 |
| MseI | TTAA | 1 cut(s) | 409 |
| MslI | CAYNNNNRTG | 1 cut(s) | 210 |
| MspI | CCGG | 2 cut(s) | 159, 362 |
| MvnI | CGCG | 1 cut(s) | 396 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 50, 353 |
| NdeII | GATC | 2 cut(s) | 153, 335 |
| NlaIII | CATG | 2 cut(s) | 212, 285 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| PagI | TCATGA | 1 cut(s) | 208 |
| PceI | AGGCCT | 1 cut(s) | 34 |
| PciSI | GCTCTTC | 1 cut(s) | 380 |
| PfeI | GAWTC | 1 cut(s) | 103 |
| Psp124BI | GAGCTC | 1 cut(s) | 375 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PsuI | RGATCY | 1 cut(s) | 335 |
| RseI | CAYNNNNRTG | 1 cut(s) | 210 |
| SacI | GAGCTC | 1 cut(s) | 375 |
| SapI | GCTCTTC | 1 cut(s) | 380 |
| SaqAI | TTAA | 1 cut(s) | 409 |
| Sau3AI | GATC | 2 cut(s) | 153, 335 |
| SduI | GDGCHC | 1 cut(s) | 375 |
| SetI | ASST | 3 cut(s) | 136, 253, 375 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 210 |
| Sse9I | AATT | 3 cut(s) | 127, 313, 319 |
| SseBI | AGGCCT | 1 cut(s) | 34 |
| SsiI | CCGC | 2 cut(s) | 170, 396 |
| SspMI | CTAG | 1 cut(s) | 228 |
| SstI | GAGCTC | 1 cut(s) | 375 |
| StuI | AGGCCT | 1 cut(s) | 34 |
| TaqI | TCGA | 1 cut(s) | 192 |
| TaqII | GACCGA | 1 cut(s) | 191 |
| TasI | AATT | 3 cut(s) | 127, 313, 319 |
| TfiI | GAWTC | 1 cut(s) | 103 |
| Tru1I | TTAA | 1 cut(s) | 409 |
| Tru9I | TTAA | 1 cut(s) | 409 |
| TspDTI | ATGAA | 1 cut(s) | 194 |
| XapI | RAATTY | 2 cut(s) | 127, 313 |
| XspI | CTAG | 1 cut(s) | 228 |