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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 160 |
| AciI | CCGC | 2 cut(s) | 359, 407 |
| AcoI | YGGCCR | 1 cut(s) | 360 |
| AcuI | CTGAAG | 1 cut(s) | 360 |
| AcyI | GRCGYC | 1 cut(s) | 19 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 369 |
| AgsI | TTSAA | 2 cut(s) | 71, 290 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 290, 322 |
| AluBI | AGCT | 1 cut(s) | 149 |
| AluI | AGCT | 1 cut(s) | 149 |
| Alw21I | GWGCWC | 1 cut(s) | 168 |
| Alw26I | GTCTC | 2 cut(s) | 56, 259 |
| Aor13HI | TCCGGA | 1 cut(s) | 160 |
| AoxI | GGCC | 1 cut(s) | 360 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 133, 165 |
| Bbv12I | GWGCWC | 1 cut(s) | 168 |
| BccI | CCATC | 1 cut(s) | 98 |
| BciVI | GTATCC | 1 cut(s) | 209 |
| BcoDI | GTCTC | 2 cut(s) | 56, 259 |
| BfuI | GTATCC | 1 cut(s) | 209 |
| BisI | GCNGC | 2 cut(s) | 360, 408 |
| BlsI | GCNGC | 2 cut(s) | 361, 409 |
| BmsI | GCATC | 1 cut(s) | 40 |
| BsaBI | GATNNNNATC | 1 cut(s) | 383 |
| BsaHI | GRCGYC | 1 cut(s) | 19 |
| BsaWI | WCCGGW | 1 cut(s) | 160 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 302, 332 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 369 |
| Bse1I | ACTGG | 1 cut(s) | 175 |
| Bse8I | GATNNNNATC | 1 cut(s) | 383 |
| BseAI | TCCGGA | 1 cut(s) | 160 |
| BseGI | GGATG | 1 cut(s) | 319 |
| BseJI | GATNNNNATC | 1 cut(s) | 383 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 369 |
| BseNI | ACTGG | 1 cut(s) | 175 |
| BseRI | GAGGAG | 1 cut(s) | 308 |
| BseX3I | CGGCCG | 1 cut(s) | 360 |
| Bsh1285I | CGRYCG | 2 cut(s) | 363, 387 |
| BshFI | GGCC | 1 cut(s) | 362 |
| BsiEI | CGRYCG | 2 cut(s) | 363, 387 |
| BsiHKAI | GWGCWC | 1 cut(s) | 168 |
| BsiSI | CCGG | 1 cut(s) | 161 |
| BslFI | GGGAC | 2 cut(s) | 30, 169 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 369 |
| BsmAI | GTCTC | 2 cut(s) | 56, 259 |
| BsmFI | GGGAC | 2 cut(s) | 30, 169 |
| BsnI | GGCC | 1 cut(s) | 362 |
| Bsp1286I | GDGCHC | 1 cut(s) | 168 |
| Bsp13I | TCCGGA | 1 cut(s) | 160 |
| Bsp143I | GATC | 1 cut(s) | 384 |
| BspACI | CCGC | 2 cut(s) | 359, 407 |
| BspANI | GGCC | 1 cut(s) | 362 |
| BspEI | TCCGGA | 1 cut(s) | 160 |
| BsrI | ACTGG | 1 cut(s) | 175 |
| BssMI | GATC | 1 cut(s) | 384 |
| BssNI | GRCGYC | 1 cut(s) | 19 |
| Bst4CI | ACNGT | 1 cut(s) | 67 |
| Bst6I | CTCTTC | 6 cut(s) | 169, 285, 336, 360, 384, 408 |
| BstACI | GRCGYC | 1 cut(s) | 19 |
| BstF5I | GGATG | 1 cut(s) | 319 |
| BstKTI | GATC | 1 cut(s) | 387 |
| BstMAI | GTCTC | 2 cut(s) | 56, 259 |
| BstMBI | GATC | 1 cut(s) | 384 |
| BstMCI | CGRYCG | 2 cut(s) | 363, 387 |
| BstZI | CGGCCG | 1 cut(s) | 360 |
| BsuI | GTATCC | 1 cut(s) | 209 |
| BsuRI | GGCC | 1 cut(s) | 362 |
| BtsCI | GGATG | 1 cut(s) | 319 |
| BtsIMutI | CAGTG | 2 cut(s) | 83, 168 |
| CseI | GACGC | 1 cut(s) | 27 |
| CviJI | RGCY | 3 cut(s) | 149, 362, 410 |
| CviKI_1 | RGCY | 3 cut(s) | 149, 362, 410 |
| DpnI | GATC | 1 cut(s) | 386 |
| DpnII | GATC | 1 cut(s) | 384 |
| DraI | TTTAAA | 1 cut(s) | 43 |
| EaeI | YGGCCR | 1 cut(s) | 360 |
| EagI | CGGCCG | 1 cut(s) | 360 |
| Eam1104I | CTCTTC | 6 cut(s) | 169, 285, 336, 360, 384, 408 |
| EarI | CTCTTC | 6 cut(s) | 169, 285, 336, 360, 384, 408 |
| EclXI | CGGCCG | 1 cut(s) | 360 |
| Eco52I | CGGCCG | 1 cut(s) | 360 |
| Eco57I | CTGAAG | 1 cut(s) | 360 |
| FaiI | YATR | 5 cut(s) | 119, 198, 334, 336, 427 |
| FaqI | GGGAC | 2 cut(s) | 30, 169 |
| Fnu4HI | GCNGC | 2 cut(s) | 360, 408 |
| FokI | GGATG | 1 cut(s) | 326 |
| Fsp4HI | GCNGC | 2 cut(s) | 360, 408 |
| GluI | GCNGC | 2 cut(s) | 360, 408 |
| HaeIII | GGCC | 1 cut(s) | 362 |
| HapII | CCGG | 1 cut(s) | 161 |
| HgaI | GACGC | 1 cut(s) | 27 |
| Hin1I | GRCGYC | 1 cut(s) | 19 |
| HinfI | GANTC | 2 cut(s) | 157, 257 |
| HpaII | CCGG | 1 cut(s) | 161 |
| Hpy188III | TCNNGA | 1 cut(s) | 161 |
| HpyCH4III | ACNGT | 1 cut(s) | 67 |
| HpyCH4IV | ACGT | 2 cut(s) | 46, 91 |
| HpySE526I | ACGT | 2 cut(s) | 46, 91 |
| Hsp92I | GRCGYC | 1 cut(s) | 19 |
| Kpn2I | TCCGGA | 1 cut(s) | 160 |
| Kzo9I | GATC | 1 cut(s) | 384 |
| LmnI | GCTCC | 1 cut(s) | 163 |
| LpnPI | CCDG | 3 cut(s) | 17, 156, 174 |
| LweI | GCATC | 1 cut(s) | 40 |
| MaeII | ACGT | 2 cut(s) | 46, 91 |
| MalI | GATC | 1 cut(s) | 386 |
| MboI | GATC | 1 cut(s) | 384 |
| MboII | GAAGA | 6 cut(s) | 186, 302, 353, 377, 401, 425 |
| MhlI | GDGCHC | 1 cut(s) | 168 |
| MluCI | AATT | 2 cut(s) | 75, 110 |
| MlyI | GAGTC | 2 cut(s) | 151, 266 |
| MmeI | TCCRAC | 1 cut(s) | 288 |
| MroI | TCCGGA | 1 cut(s) | 160 |
| MseI | TTAA | 3 cut(s) | 42, 57, 252 |
| MspI | CCGG | 1 cut(s) | 161 |
| NdeII | GATC | 1 cut(s) | 384 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 97 |
| PkrI | GCNGC | 2 cut(s) | 361, 409 |
| Ple19I | CGATCG | 1 cut(s) | 387 |
| PleI | GAGTC | 2 cut(s) | 151, 265 |
| PpsI | GAGTC | 2 cut(s) | 151, 265 |
| PvuI | CGATCG | 1 cut(s) | 387 |
| SaqAI | TTAA | 3 cut(s) | 42, 57, 252 |
| SatI | GCNGC | 2 cut(s) | 360, 408 |
| Sau3AI | GATC | 1 cut(s) | 384 |
| SchI | GAGTC | 2 cut(s) | 151, 266 |
| SduI | GDGCHC | 1 cut(s) | 168 |
| SetI | ASST | 4 cut(s) | 49, 94, 151, 228 |
| SfaNI | GCATC | 1 cut(s) | 40 |
| Sse9I | AATT | 2 cut(s) | 75, 110 |
| SsiI | CCGC | 2 cut(s) | 359, 407 |
| TaaI | ACNGT | 1 cut(s) | 67 |
| TaiI | ACGT | 2 cut(s) | 49, 94 |
| TaqI | TCGA | 2 cut(s) | 260, 387 |
| TasI | AATT | 2 cut(s) | 75, 110 |
| TauI | GCSGC | 2 cut(s) | 362, 410 |
| Tru1I | TTAA | 3 cut(s) | 42, 57, 252 |
| Tru9I | TTAA | 3 cut(s) | 42, 57, 252 |
| TscAI | CASTG | 2 cut(s) | 90, 175 |
| TspRI | CASTG | 2 cut(s) | 90, 175 |