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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 258, 286 |
| AccIII | TCCGGA | 1 cut(s) | 241 |
| AclWI | GGATC | 3 cut(s) | 233, 263, 276 |
| AfaI | GTAC | 1 cut(s) | 365 |
| AflIII | ACRYGT | 1 cut(s) | 408 |
| AgsI | TTSAA | 2 cut(s) | 98, 398 |
| AjiI | CACGTC | 1 cut(s) | 411 |
| AluBI | AGCT | 3 cut(s) | 13, 155, 447 |
| AluI | AGCT | 3 cut(s) | 13, 155, 447 |
| AlwI | GGATC | 3 cut(s) | 233, 263, 276 |
| Ama87I | CYCGRG | 2 cut(s) | 208, 459 |
| Aor13HI | TCCGGA | 1 cut(s) | 241 |
| ApeKI | GCWGC | 3 cut(s) | 71, 444, 447 |
| AspS9I | GGNCC | 1 cut(s) | 141 |
| AsuC2I | CCSGG | 1 cut(s) | 180 |
| AsuHPI | GGTGA | 1 cut(s) | 490 |
| AvaI | CYCGRG | 2 cut(s) | 208, 459 |
| AvaII | GGWCC | 1 cut(s) | 141 |
| BamHI | GGATCC | 1 cut(s) | 268 |
| BbsI | GAAGAC | 2 cut(s) | 286, 405 |
| BbvI | GCAGC | 3 cut(s) | 58, 434, 456 |
| BceAI | ACGGC | 1 cut(s) | 511 |
| BciVI | GTATCC | 1 cut(s) | 371 |
| BcnI | CCSGG | 1 cut(s) | 180 |
| BfuI | GTATCC | 1 cut(s) | 371 |
| BisI | GCNGC | 3 cut(s) | 72, 445, 448 |
| BlsI | GCNGC | 3 cut(s) | 73, 446, 449 |
| Bme1390I | CCNGG | 1 cut(s) | 180 |
| Bme18I | GGWCC | 1 cut(s) | 141 |
| BmeT110I | CYCGRG | 2 cut(s) | 208, 459 |
| BmgBI | CACGTC | 1 cut(s) | 411 |
| BmgT120I | GGNCC | 1 cut(s) | 141 |
| BmiI | GGNNCC | 2 cut(s) | 270, 525 |
| BmrFI | CCNGG | 1 cut(s) | 180 |
| BmsI | GCATC | 1 cut(s) | 310 |
| BpiI | GAAGAC | 2 cut(s) | 286, 405 |
| BpuMI | CCSGG | 1 cut(s) | 180 |
| BsaWI | WCCGGW | 1 cut(s) | 241 |
| Bse1I | ACTGG | 2 cut(s) | 26, 133 |
| Bse3DI | GCAATG | 1 cut(s) | 330 |
| BseAI | TCCGGA | 1 cut(s) | 241 |
| BseGI | GGATG | 1 cut(s) | 478 |
| BseMI | GCAATG | 1 cut(s) | 330 |
| BseMII | CTCAG | 2 cut(s) | 50, 149 |
| BseNI | ACTGG | 2 cut(s) | 26, 133 |
| BseXI | GCAGC | 3 cut(s) | 58, 434, 456 |
| BsiHKCI | CYCGRG | 2 cut(s) | 208, 459 |
| BsiSI | CCGG | 2 cut(s) | 179, 242 |
| BslFI | GGGAC | 2 cut(s) | 139, 446 |
| BsmFI | GGGAC | 2 cut(s) | 139, 446 |
| BsmI | GAATGC | 1 cut(s) | 54 |
| BsoBI | CYCGRG | 2 cut(s) | 208, 459 |
| Bsp13I | TCCGGA | 1 cut(s) | 241 |
| Bsp143I | GATC | 3 cut(s) | 214, 238, 268 |
| BspCNI | CTCAG | 2 cut(s) | 51, 148 |
| BspEI | TCCGGA | 1 cut(s) | 241 |
| BspLI | GGNNCC | 2 cut(s) | 270, 525 |
| BspPI | GGATC | 3 cut(s) | 233, 263, 276 |
| BsrDI | GCAATG | 1 cut(s) | 330 |
| BsrI | ACTGG | 2 cut(s) | 26, 133 |
| BssMI | GATC | 3 cut(s) | 214, 238, 268 |
| BssNAI | GTATAC | 1 cut(s) | 287 |
| Bst1107I | GTATAC | 1 cut(s) | 287 |
| Bst4CI | ACNGT | 3 cut(s) | 232, 256, 417 |
| Bst6I | CTCTTC | 1 cut(s) | 24 |
| BstC8I | GCNNGC | 2 cut(s) | 165, 332 |
| BstDEI | CTNAG | 2 cut(s) | 59, 135 |
| BstF5I | GGATG | 1 cut(s) | 478 |
| BstKTI | GATC | 3 cut(s) | 217, 241, 271 |
| BstMBI | GATC | 3 cut(s) | 214, 238, 268 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 500 |
| BstNSI | RCATGY | 1 cut(s) | 334 |
| BstSCI | CCNGG | 1 cut(s) | 178 |
| BstV1I | GCAGC | 3 cut(s) | 58, 434, 456 |
| BstV2I | GAAGAC | 2 cut(s) | 286, 405 |
| BstX2I | RGATCY | 1 cut(s) | 268 |
| BstYI | RGATCY | 1 cut(s) | 268 |
| BstZ17I | GTATAC | 1 cut(s) | 287 |
| BsuI | GTATCC | 1 cut(s) | 371 |
| BtrI | CACGTC | 1 cut(s) | 411 |
| BtsCI | GGATG | 1 cut(s) | 478 |
| BtsIMutI | CAGTG | 1 cut(s) | 252 |
| Cac8I | GCNNGC | 2 cut(s) | 165, 332 |
| Cfr13I | GGNCC | 1 cut(s) | 141 |
| Csp6I | GTAC | 1 cut(s) | 364 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 340, 375 |
| CviAII | CATG | 6 cut(s) | 193, 265, 291, 331, 373, 382 |
| CviJI | RGCY | 7 cut(s) | 13, 35, 155, 163, 447, 494, 526 |
| CviKI_1 | RGCY | 7 cut(s) | 13, 35, 155, 163, 447, 494, 526 |
| CviQI | GTAC | 1 cut(s) | 364 |
| DdeI | CTNAG | 2 cut(s) | 59, 135 |
| DpnI | GATC | 3 cut(s) | 216, 240, 270 |
| DpnII | GATC | 3 cut(s) | 214, 238, 268 |
| Eam1104I | CTCTTC | 1 cut(s) | 24 |
| EarI | CTCTTC | 1 cut(s) | 24 |
| Eco47I | GGWCC | 1 cut(s) | 141 |
| Eco88I | CYCGRG | 2 cut(s) | 208, 459 |
| FaeI | CATG | 6 cut(s) | 196, 268, 294, 334, 376, 385 |
| FaqI | GGGAC | 2 cut(s) | 139, 446 |
| FatI | CATG | 6 cut(s) | 192, 264, 290, 330, 372, 381 |
| FblI | GTMKAC | 2 cut(s) | 258, 286 |
| Fnu4HI | GCNGC | 3 cut(s) | 72, 445, 448 |
| FokI | GGATG | 1 cut(s) | 485 |
| Fsp4HI | GCNGC | 3 cut(s) | 72, 445, 448 |
| GluI | GCNGC | 3 cut(s) | 72, 445, 448 |
| HapII | CCGG | 2 cut(s) | 179, 242 |
| Hin1II | CATG | 6 cut(s) | 196, 268, 294, 334, 376, 385 |
| HpaII | CCGG | 2 cut(s) | 179, 242 |
| HphI | GGTGA | 1 cut(s) | 490 |
| Hpy166II | GTNNAC | 2 cut(s) | 259, 287 |
| Hpy188I | TCNGA | 2 cut(s) | 60, 138 |
| Hpy188III | TCNNGA | 2 cut(s) | 242, 461 |
| Hpy8I | GTNNAC | 2 cut(s) | 259, 287 |
| HpyAV | CCTTC | 2 cut(s) | 346, 514 |
| HpyCH4III | ACNGT | 3 cut(s) | 232, 256, 417 |
| HpyCH4IV | ACGT | 2 cut(s) | 283, 410 |
| HpyCH4V | TGCA | 4 cut(s) | 54, 167, 323, 450 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 500 |
| HpyF3I | CTNAG | 2 cut(s) | 59, 135 |
| HpySE526I | ACGT | 2 cut(s) | 283, 410 |
| Hsp92II | CATG | 6 cut(s) | 196, 268, 294, 334, 376, 385 |
| Kpn2I | TCCGGA | 1 cut(s) | 241 |
| Kzo9I | GATC | 3 cut(s) | 214, 238, 268 |
| LmnI | GCTCC | 1 cut(s) | 523 |
| LpnPI | CCDG | 5 cut(s) | 39, 114, 192, 255, 285 |
| Lsp1109I | GCAGC | 3 cut(s) | 58, 434, 456 |
| LweI | GCATC | 1 cut(s) | 310 |
| MaeII | ACGT | 2 cut(s) | 283, 410 |
| MaeIII | GTNAC | 2 cut(s) | 411, 421 |
| MalI | GATC | 3 cut(s) | 216, 240, 270 |
| MboI | GATC | 3 cut(s) | 214, 238, 268 |
| MboII | GAAGA | 7 cut(s) | 11, 14, 75, 291, 319, 410, 520 |
| MflI | RGATCY | 1 cut(s) | 268 |
| MluCI | AATT | 1 cut(s) | 393 |
| MmeI | TCCRAC | 2 cut(s) | 69, 364 |
| MnlI | CCTC | 5 cut(s) | 25, 132, 378, 434, 469 |
| MroI | TCCGGA | 1 cut(s) | 241 |
| MspA1I | CMGCKG | 1 cut(s) | 447 |
| MspI | CCGG | 2 cut(s) | 179, 242 |
| MspR9I | CCNGG | 1 cut(s) | 180 |
| Mva1269I | GAATGC | 1 cut(s) | 54 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 500 |
| NciI | CCSGG | 1 cut(s) | 180 |
| NdeII | GATC | 3 cut(s) | 214, 238, 268 |
| NlaIII | CATG | 6 cut(s) | 196, 268, 294, 334, 376, 385 |
| NlaIV | GGNNCC | 2 cut(s) | 270, 525 |
| NmuCI | GTSAC | 1 cut(s) | 411 |
| NspI | RCATGY | 1 cut(s) | 334 |
| PaeI | GCATGC | 1 cut(s) | 334 |
| PaeR7I | CTCGAG | 1 cut(s) | 459 |
| PctI | GAATGC | 1 cut(s) | 54 |
| PflFI | GACNNNGTC | 1 cut(s) | 254 |
| PkrI | GCNGC | 3 cut(s) | 73, 446, 449 |
| PspN4I | GGNNCC | 2 cut(s) | 270, 525 |
| PspPI | GGNCC | 1 cut(s) | 141 |
| PsuI | RGATCY | 1 cut(s) | 268 |
| PsyI | GACNNNGTC | 1 cut(s) | 254 |
| PvuII | CAGCTG | 1 cut(s) | 447 |
| RsaI | GTAC | 1 cut(s) | 365 |
| RsaNI | GTAC | 1 cut(s) | 364 |
| SatI | GCNGC | 3 cut(s) | 72, 445, 448 |
| Sau3AI | GATC | 3 cut(s) | 214, 238, 268 |
| Sau96I | GGNCC | 1 cut(s) | 141 |
| ScrFI | CCNGG | 1 cut(s) | 180 |
| SetI | ASST | 6 cut(s) | 15, 157, 286, 413, 449, 480 |
| SfaNI | GCATC | 1 cut(s) | 310 |
| Sfr274I | CTCGAG | 1 cut(s) | 459 |
| SinI | GGWCC | 1 cut(s) | 141 |
| SlaI | CTCGAG | 1 cut(s) | 459 |
| SmlI | CTYRAG | 1 cut(s) | 459 |
| SmoI | CTYRAG | 1 cut(s) | 459 |
| SphI | GCATGC | 1 cut(s) | 334 |
| Sse9I | AATT | 1 cut(s) | 393 |
| SspI | AATATT | 1 cut(s) | 467 |
| StyD4I | CCNGG | 1 cut(s) | 178 |
| TaaI | ACNGT | 3 cut(s) | 232, 256, 417 |
| TaiI | ACGT | 2 cut(s) | 286, 413 |
| TaqI | TCGA | 2 cut(s) | 9, 460 |
| TaqII | GACCGA | 1 cut(s) | 158 |
| TasI | AATT | 1 cut(s) | 393 |
| TscAI | CASTG | 1 cut(s) | 259 |
| TseFI | GTSAC | 1 cut(s) | 411 |
| TseI | GCWGC | 3 cut(s) | 71, 444, 447 |
| Tsp45I | GTSAC | 1 cut(s) | 411 |
| TspDTI | ATGAA | 2 cut(s) | 181, 253 |
| TspRI | CASTG | 1 cut(s) | 259 |
| Tth111I | GACNNNGTC | 1 cut(s) | 254 |
| VpaK11BI | GGWCC | 1 cut(s) | 141 |
| XceI | RCATGY | 1 cut(s) | 334 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 297 |
| XhoI | CTCGAG | 1 cut(s) | 459 |
| XmiI | GTMKAC | 2 cut(s) | 258, 286 |