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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 38, 351 |
| AccIII | TCCGGA | 1 cut(s) | 603 |
| AciI | CCGC | 2 cut(s) | 83, 483 |
| AclWI | GGATC | 5 cut(s) | 287, 320, 333, 518, 531 |
| AcuI | CTGAAG | 1 cut(s) | 206 |
| AfaI | GTAC | 1 cut(s) | 101 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 335, 533 |
| AgsI | TTSAA | 1 cut(s) | 118 |
| AjnI | CCWGG | 3 cut(s) | 265, 334, 564 |
| AluBI | AGCT | 3 cut(s) | 21, 215, 572 |
| AluI | AGCT | 3 cut(s) | 21, 215, 572 |
| Alw26I | GTCTC | 1 cut(s) | 302 |
| AlwI | GGATC | 5 cut(s) | 287, 320, 333, 518, 531 |
| Ama87I | CYCGRG | 1 cut(s) | 411 |
| Aor13HI | TCCGGA | 1 cut(s) | 603 |
| AoxI | GGCC | 1 cut(s) | 268 |
| ApeKI | GCWGC | 2 cut(s) | 135, 212 |
| AspLEI | GCGC | 1 cut(s) | 501 |
| AsuHPI | GGTGA | 1 cut(s) | 248 |
| AvaI | CYCGRG | 1 cut(s) | 411 |
| BamHI | GGATCC | 2 cut(s) | 325, 523 |
| BbsI | GAAGAC | 1 cut(s) | 233 |
| BbvI | GCAGC | 2 cut(s) | 147, 224 |
| BceAI | ACGGC | 1 cut(s) | 255 |
| BciT130I | CCWGG | 3 cut(s) | 267, 336, 566 |
| BcoDI | GTCTC | 1 cut(s) | 302 |
| BfmI | CTRYAG | 1 cut(s) | 162 |
| BisI | GCNGC | 2 cut(s) | 136, 213 |
| BlsI | GCNGC | 2 cut(s) | 137, 214 |
| Bme1390I | CCNGG | 3 cut(s) | 267, 336, 566 |
| BmeT110I | CYCGRG | 1 cut(s) | 411 |
| BmiI | GGNNCC | 2 cut(s) | 327, 525 |
| BmrFI | CCNGG | 3 cut(s) | 267, 336, 566 |
| BmsI | GCATC | 2 cut(s) | 243, 486 |
| BpiI | GAAGAC | 1 cut(s) | 233 |
| BsaI | GGTCTC | 1 cut(s) | 302 |
| BsaJI | CCNNGG | 1 cut(s) | 531 |
| BsaWI | WCCGGW | 1 cut(s) | 603 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 335, 533 |
| Bse1I | ACTGG | 1 cut(s) | 210 |
| Bse3DI | GCAATG | 1 cut(s) | 478 |
| BseAI | TCCGGA | 1 cut(s) | 603 |
| BseBI | CCWGG | 3 cut(s) | 267, 336, 566 |
| BseDI | CCNNGG | 1 cut(s) | 531 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 335, 533 |
| BseMI | GCAATG | 1 cut(s) | 478 |
| BseMII | CTCAG | 1 cut(s) | 462 |
| BseNI | ACTGG | 1 cut(s) | 210 |
| BseXI | GCAGC | 2 cut(s) | 147, 224 |
| BseYI | CCCAGC | 1 cut(s) | 467 |
| BsgI | GTGCAG | 1 cut(s) | 154 |
| BshFI | GGCC | 1 cut(s) | 270 |
| BsiHKCI | CYCGRG | 1 cut(s) | 411 |
| BsiSI | CCGG | 1 cut(s) | 604 |
| BslFI | GGGAC | 1 cut(s) | 524 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 335, 533 |
| BsmAI | GTCTC | 1 cut(s) | 302 |
| BsmFI | GGGAC | 1 cut(s) | 524 |
| BsmI | GAATGC | 1 cut(s) | 485 |
| BsnI | GGCC | 1 cut(s) | 270 |
| Bso31I | GGTCTC | 1 cut(s) | 302 |
| BsoBI | CYCGRG | 1 cut(s) | 411 |
| Bsp13I | TCCGGA | 1 cut(s) | 603 |
| Bsp143I | GATC | 4 cut(s) | 197, 279, 325, 523 |
| BspACI | CCGC | 2 cut(s) | 83, 483 |
| BspANI | GGCC | 1 cut(s) | 270 |
| BspCNI | CTCAG | 1 cut(s) | 461 |
| BspEI | TCCGGA | 1 cut(s) | 603 |
| BspHI | TCATGA | 2 cut(s) | 249, 504 |
| BspLI | GGNNCC | 2 cut(s) | 327, 525 |
| BspPI | GGATC | 5 cut(s) | 287, 320, 333, 518, 531 |
| BspTNI | GGTCTC | 1 cut(s) | 302 |
| BsrDI | GCAATG | 1 cut(s) | 478 |
| BsrI | ACTGG | 1 cut(s) | 210 |
| BssECI | CCNNGG | 1 cut(s) | 531 |
| BssMI | GATC | 4 cut(s) | 197, 279, 325, 523 |
| BssNAI | GTATAC | 1 cut(s) | 39 |
| BssT1I | CCWWGG | 1 cut(s) | 531 |
| Bst1107I | GTATAC | 1 cut(s) | 39 |
| Bst2UI | CCWGG | 3 cut(s) | 267, 336, 566 |
| Bst4CI | ACNGT | 5 cut(s) | 43, 166, 236, 313, 380 |
| Bst6I | CTCTTC | 1 cut(s) | 351 |
| BstDEI | CTNAG | 1 cut(s) | 448 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 333 |
| BstHHI | GCGC | 1 cut(s) | 501 |
| BstKTI | GATC | 4 cut(s) | 200, 282, 328, 526 |
| BstMAI | GTCTC | 1 cut(s) | 302 |
| BstMBI | GATC | 4 cut(s) | 197, 279, 325, 523 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 144 |
| BstNI | CCWGG | 3 cut(s) | 267, 336, 566 |
| BstSCI | CCNGG | 3 cut(s) | 265, 334, 564 |
| BstSFI | CTRYAG | 1 cut(s) | 162 |
| BstV1I | GCAGC | 2 cut(s) | 147, 224 |
| BstV2I | GAAGAC | 1 cut(s) | 233 |
| BstX2I | RGATCY | 3 cut(s) | 279, 325, 523 |
| BstYI | RGATCY | 3 cut(s) | 279, 325, 523 |
| BstZ17I | GTATAC | 1 cut(s) | 39 |
| BsuRI | GGCC | 1 cut(s) | 270 |
| BtsIMutI | CAGTG | 1 cut(s) | 385 |
| CciI | TCATGA | 2 cut(s) | 249, 504 |
| CfoI | GCGC | 1 cut(s) | 501 |
| Csp6I | GTAC | 1 cut(s) | 100 |
| CviAII | CATG | 4 cut(s) | 139, 250, 505, 520 |
| CviJI | RGCY | 9 cut(s) | 21, 54, 125, 147, 215, 270, 410, 572, 590 |
| CviKI_1 | RGCY | 9 cut(s) | 21, 54, 125, 147, 215, 270, 410, 572, 590 |
| CviQI | GTAC | 1 cut(s) | 100 |
| DdeI | CTNAG | 1 cut(s) | 448 |
| DpnI | GATC | 4 cut(s) | 199, 281, 327, 525 |
| DpnII | GATC | 4 cut(s) | 197, 279, 325, 523 |
| DraI | TTTAAA | 1 cut(s) | 387 |
| Eam1104I | CTCTTC | 1 cut(s) | 351 |
| EarI | CTCTTC | 1 cut(s) | 351 |
| Eco130I | CCWWGG | 1 cut(s) | 531 |
| Eco31I | GGTCTC | 1 cut(s) | 302 |
| Eco57I | CTGAAG | 1 cut(s) | 206 |
| Eco88I | CYCGRG | 1 cut(s) | 411 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 333 |
| EcoRII | CCWGG | 3 cut(s) | 265, 334, 564 |
| EcoT14I | CCWWGG | 1 cut(s) | 531 |
| ErhI | CCWWGG | 1 cut(s) | 531 |
| FaeI | CATG | 4 cut(s) | 142, 253, 508, 523 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 86, 118 |
| FaqI | GGGAC | 1 cut(s) | 524 |
| FatI | CATG | 4 cut(s) | 138, 249, 504, 519 |
| FauI | CCCGC | 1 cut(s) | 476 |
| FblI | GTMKAC | 2 cut(s) | 38, 351 |
| Fnu4HI | GCNGC | 2 cut(s) | 136, 213 |
| Fsp4HI | GCNGC | 2 cut(s) | 136, 213 |
| GlaI | GCGC | 1 cut(s) | 500 |
| GluI | GCNGC | 2 cut(s) | 136, 213 |
| GsaI | CCCAGC | 1 cut(s) | 471 |
| HaeIII | GGCC | 1 cut(s) | 270 |
| HapII | CCGG | 1 cut(s) | 604 |
| HhaI | GCGC | 1 cut(s) | 501 |
| Hin1II | CATG | 4 cut(s) | 142, 253, 508, 523 |
| Hin6I | GCGC | 1 cut(s) | 499 |
| HinP1I | GCGC | 1 cut(s) | 499 |
| HincII | GTYRAC | 1 cut(s) | 352 |
| HindII | GTYRAC | 1 cut(s) | 352 |
| HindIII | AAGCTT | 1 cut(s) | 570 |
| HinfI | GANTC | 2 cut(s) | 12, 60 |
| HpaII | CCGG | 1 cut(s) | 604 |
| HphI | GGTGA | 1 cut(s) | 248 |
| Hpy166II | GTNNAC | 4 cut(s) | 39, 239, 352, 376 |
| Hpy188I | TCNGA | 2 cut(s) | 91, 225 |
| Hpy188III | TCNNGA | 5 cut(s) | 201, 250, 373, 505, 604 |
| Hpy8I | GTNNAC | 4 cut(s) | 39, 239, 352, 376 |
| Hpy99I | CGWCG | 1 cut(s) | 356 |
| HpyAV | CCTTC | 2 cut(s) | 298, 537 |
| HpyCH4III | ACNGT | 5 cut(s) | 43, 166, 236, 313, 380 |
| HpyCH4IV | ACGT | 1 cut(s) | 421 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 135, 463, 554 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 144 |
| HpyF3I | CTNAG | 1 cut(s) | 448 |
| HpySE526I | ACGT | 1 cut(s) | 421 |
| Hsp92II | CATG | 4 cut(s) | 142, 253, 508, 523 |
| HspAI | GCGC | 1 cut(s) | 499 |
| Kpn2I | TCCGGA | 1 cut(s) | 603 |
| Kzo9I | GATC | 4 cut(s) | 197, 279, 325, 523 |
| Lsp1109I | GCAGC | 2 cut(s) | 147, 224 |
| LweI | GCATC | 2 cut(s) | 243, 486 |
| MaeII | ACGT | 1 cut(s) | 421 |
| MaeIII | GTNAC | 2 cut(s) | 43, 61 |
| MalI | GATC | 4 cut(s) | 199, 281, 327, 525 |
| MboI | GATC | 4 cut(s) | 197, 279, 325, 523 |
| MboII | GAAGA | 2 cut(s) | 238, 368 |
| MflI | RGATCY | 3 cut(s) | 279, 325, 523 |
| MluCI | AATT | 3 cut(s) | 432, 633, 649 |
| MlyI | GAGTC | 1 cut(s) | 69 |
| MnlI | CCTC | 4 cut(s) | 90, 339, 352, 501 |
| MroI | TCCGGA | 1 cut(s) | 603 |
| MseI | TTAA | 2 cut(s) | 386, 639 |
| MslI | CAYNNNNRTG | 2 cut(s) | 458, 518 |
| MspI | CCGG | 1 cut(s) | 604 |
| MspR9I | CCNGG | 3 cut(s) | 267, 336, 566 |
| Mva1269I | GAATGC | 1 cut(s) | 485 |
| MvaI | CCWGG | 3 cut(s) | 267, 336, 566 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 144 |
| NdeII | GATC | 4 cut(s) | 197, 279, 325, 523 |
| NlaIII | CATG | 4 cut(s) | 142, 253, 508, 523 |
| NlaIV | GGNNCC | 2 cut(s) | 327, 525 |
| NmuCI | GTSAC | 1 cut(s) | 61 |
| PagI | TCATGA | 2 cut(s) | 249, 504 |
| PctI | GAATGC | 1 cut(s) | 485 |
| PfeI | GAWTC | 1 cut(s) | 12 |
| PkrI | GCNGC | 2 cut(s) | 137, 214 |
| PleI | GAGTC | 1 cut(s) | 68 |
| PpsI | GAGTC | 1 cut(s) | 68 |
| Psp6I | CCWGG | 3 cut(s) | 265, 334, 564 |
| PspFI | CCCAGC | 1 cut(s) | 467 |
| PspGI | CCWGG | 3 cut(s) | 265, 334, 564 |
| PspN4I | GGNNCC | 2 cut(s) | 327, 525 |
| PsuI | RGATCY | 3 cut(s) | 279, 325, 523 |
| RsaI | GTAC | 1 cut(s) | 101 |
| RsaNI | GTAC | 1 cut(s) | 100 |
| RseI | CAYNNNNRTG | 2 cut(s) | 458, 518 |
| SalI | GTCGAC | 1 cut(s) | 350 |
| SaqAI | TTAA | 2 cut(s) | 386, 639 |
| SatI | GCNGC | 2 cut(s) | 136, 213 |
| Sau3AI | GATC | 4 cut(s) | 197, 279, 325, 523 |
| SchI | GAGTC | 1 cut(s) | 69 |
| ScrFI | CCNGG | 3 cut(s) | 267, 336, 566 |
| SetI | ASST | 6 cut(s) | 23, 101, 217, 340, 424, 574 |
| SfaNI | GCATC | 2 cut(s) | 243, 486 |
| SfcI | CTRYAG | 1 cut(s) | 162 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 458, 518 |
| Sse9I | AATT | 3 cut(s) | 432, 633, 649 |
| SsiI | CCGC | 2 cut(s) | 83, 483 |
| StyD4I | CCNGG | 3 cut(s) | 265, 334, 564 |
| StyI | CCWWGG | 1 cut(s) | 531 |
| TaaI | ACNGT | 5 cut(s) | 43, 166, 236, 313, 380 |
| TaiI | ACGT | 1 cut(s) | 424 |
| TaqI | TCGA | 4 cut(s) | 153, 217, 351, 477 |
| TasI | AATT | 3 cut(s) | 432, 633, 649 |
| TfiI | GAWTC | 1 cut(s) | 12 |
| Tru1I | TTAA | 2 cut(s) | 386, 639 |
| Tru9I | TTAA | 2 cut(s) | 386, 639 |
| TscAI | CASTG | 1 cut(s) | 385 |
| TseFI | GTSAC | 1 cut(s) | 61 |
| TseI | GCWGC | 2 cut(s) | 135, 212 |
| Tsp45I | GTSAC | 1 cut(s) | 61 |
| TspDTI | ATGAA | 6 cut(s) | 18, 238, 493, 564, 612, 624 |
| TspGWI | ACGGA | 1 cut(s) | 14 |
| TspRI | CASTG | 1 cut(s) | 385 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 333 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 273 |
| XmiI | GTMKAC | 2 cut(s) | 38, 351 |